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PANDIT
Protein and Associated NucleotideDomains with Inferred Trees

PF00010 phylogeny
for nucleotide alignment


 
((((((((((((((((((((TAP_DROME/155-207,((((Q9V7M2_DROME/104-156,O57598_CHICK/40-92),AMOS_DROME/139-191),ATO_DROME/256-308),(((O45489_CAEEL/50-101,BETA3_MESAU/229-283),(OLIG3_MOUSE/85-139,OLIG1_MOUSE/95-154)),(MIST1_RAT/73-125,Q9VID2_DROME/157-209)))),((((Q17588_CAEEL/303-357,DA_DROME/555-608),Q91631_XENLA/8-61),DEI_DROME/95-154),(Q99NA2_MOUSE/232-284,Q9VPI8_DROME/274-326))),(((Q20561_CAEEL/42-94,HLH4_CAEEL/6-57),Q9VEY3_DROME/156-206),Q9VGJ5_DROME/87-139)),(Q24354_DROME/186-238,Q16509_HUMAN/188-240)),(((P97309_MOUSE/77-131,(O93439_CHICK/68-122,(Q9DEQ9_CHICK/96-150,(O73624_XENLA/96-150,(Q9IAJ4_BRARE/88-142,Q9IB69_BRARE/67-121))))),Q9VHG3_DROME/180-233),((((HAND1_CHICK/84-136,Q9VL05_DROME/59-111),((Q64305_RAT/163-215,(TWST2_RAT/67-118,(TWST_CAEEL/21-72,Q9GNV2_PODCA/52-103))),SCX_MOUSE/79-131)),(MUSC_HUMAN/108-160,O18374_DROME/32-84)),(Q9JLR5_MOUSE/76-128,Q24353_DROME/104-156)))),((((Q22717_CAEEL/62-113,Q25179_HYDAT/67-117),(((AST3_DROME/86-146,O76488_JUNCO/77-138),(AST8_DROME/162-224,AST5_DROME/27-91)),(Q98SF2_XENLA/47-98,AST4_DROME/102-163))),ASCL3_MOUSE/94-145),(((O45320_CAEEL/41-95,HLH6_CAEEL/176-226),Q18612_CAEEL/24-78),(((Q25124_HALRO/243-294,Q94816_TRISP/235-286),Q92001_XENLA/93-144),O93493_CYPCA/68-119)))),((YMH7_CAEEL/113-164,Q9JIZ5_MOUSE/49-100),(FIGLA_MOUSE/60-112,Q9W7E6_ORYLA/51-103))),(ID4_HUMAN/53-105,((O42447_ONCMY/31-83,ID1_HUMAN/56-106),ID2_HUMAN/24-76))),((((TCFL5_HUMAN/353-406,((MNT_HUMAN/221-272,O46042_DROME/262-315),(Q62912_RAT/58-110,((((Q21663_CAEEL/96-148,Q9NDP3_CIOIN/57-109),MXI1_HUMAN/68-120),MAD_HUMAN/57-109),MAD4_HUMAN/54-106)))),((Q06860_YEAST/251-307,NUC1_NEUCR/668-758),MYC_DROME/626-678)),((((MYCL_XENLA/262-314,MYCM_HUMAN/275-327),MYCL_HUMAN/282-334),((Q26649_STRPU/350-402,MYC_ASTVU/322-374),(Q91421_ONCMY/311-364,Q67004_FLV/282-334))),(MAX_DROME/40-91,(Q14803_HUMAN/24-75,(Q18711_CAEEL/48-99,P90982_CAEEL/30-83))))),((WBS14_MOUSE/662-716,Q9BKE4_DROME/629-683),(MLX_MOUSE/130-188,Q9GQP6_DROME/72-128)))),(Q25428_LYTVA/215-270,Q9W4J8_DROME/255-343)),(((HEY1_CANFA/52-105,Q9U9U4_DROME/103-156),((Q9U450_DROME/63-118,BHLH2_MOUSE/54-108),((Q91635_XENLA/35-92,(((Q90465_BRARE/17-73,Q9JHC5_MOUSE/19-75),((Q9DF73_BRARE/14-71,Q9W7B6_XENLA/13-70),((Q90467_BRARE/7-64,Q9W7B5_XENLA/27-84),Q90463_BRARE/13-70))),(O16853_CAEEL/22-79,((Q9DEU7_BRARE/22-74,(Q90466_BRARE/20-74,((Q9PTN9_XENLA/2-56,HES5_MOUSE/19-73),Q9PTN8_XENLA/21-75))),HES6_MOUSE/28-78)))),(((ESM3_DROME/12-69,(ESM8_DROHY/11-66,ESM7_DROME/14-69)),ESMD_DROME/16-73),(((HES2_HUMAN/14-71,Q99JA6_MOUSE/13-70),Q9VJ16_DROME/51-115),DPN_DROME/41-98))))),((((BMAL1_HUMAN/73-126,Q9H2M4_HUMAN/74-127),CYCL_DROME/31-84),Q98SK3_BRARE/46-99),(O44118_DROME/37-90,Q9VXW7_DROME/8-61)))),((Q9XX00_CAEEL/356-406,Q98SH5_CHICK/177-227),Q24146_DROME/284-334)),(RTG1_YEAST/12-97,(((Q92242_KLULA/180-254,TYE7_YEAST/181-266),((Q9UUD1_SCHPO/261-333,O43019_SCHPO/427-496),Q12398_YEAST/267-342)),MITF_HUMAN/312-365))),Q9TZ70_CAEEL/48-102),(((Q9CAA4_ARATH/46-96,Q9FMB6_ARATH/34-86),WBS14_CAEEL/804-857),(((Q9LYT0_ARATH/257-306,Q9SQ79_PINTA/477-526),RTG3_YEAST/286-345),(((O23297_ARATH/125-176,Q9FH37_ARATH/72-123),Q9FN69_ARATH/438-487),(Q22069_CAEEL/14-64,Q19918_CAEEL/45-96))))),(ESC1_SCHPO/335-386,Q9H8R3_HUMAN/594-645)),((O82599_ARATH/113-176,Q9M270_ARATH/176-227),((Q9FKQ6_ARATH/100-151,Q9C7T4_ARATH/123-174),Q9FK20_ARATH/100-151))),(Q9SUB6_ARATH/12-64,(Q9SZK7_ARATH/1318-1381,(Q9FLI1_ARATH/2-54,(Q9LN89_ARATH/75-127,Q9LQ08_ARATH/74-126))))),Q9FYE6_ARATH/66-118),Q9M1K0_ARATH/77-129,Q9ZVB5_ARATH/62-114);
((((((((((((((((((((TAP_DROME/155-207:0.28979,((((Q9V7M2_DROME/104-156:0.23320,O57598_CHICK/40-92:0.28982):0.08867,AMOS_DROME/139-191:0.19357):0.04277,ATO_DROME/256-308:0.33218):0.11948,(((O45489_CAEEL/50-101:0.41466,BETA3_MESAU/229-283:0.01556):0.06794,(OLIG3_MOUSE/85-139:0.09354,OLIG1_MOUSE/95-154:0.23058):0.07327):0.17364,(MIST1_RAT/73-125:0.13513,Q9VID2_DROME/157-209:0.24409):0.12239):0.09864):0.05030):0.04174,((((Q17588_CAEEL/303-357:0.49101,DA_DROME/555-608:0.09587):0.10692,Q91631_XENLA/8-61:0.19426):0.30947,DEI_DROME/95-154:0.31476):0.12512,(Q99NA2_MOUSE/232-284:0.13745,Q9VPI8_DROME/274-326:0.46883):0.16024):0.06356):0.03929,(((Q20561_CAEEL/42-94:0.23490,HLH4_CAEEL/6-57:0.60427):0.12965,Q9VEY3_DROME/156-206:0.38236):0.10607,Q9VGJ5_DROME/87-139:0.22548):0.16829):0.03400,(Q24354_DROME/186-238:0.18887,Q16509_HUMAN/188-240:0.11361):0.16375):0.02474,(((P97309_MOUSE/77-131:0.09750,(O93439_CHICK/68-122:0.12743,(Q9DEQ9_CHICK/96-150:0.27800,(O73624_XENLA/96-150:0.30627,(Q9IAJ4_BRARE/88-142:0.15154,Q9IB69_BRARE/67-121:0.17428):0.13257):0.14537):0.03889):0.04281):0.17549,Q9VHG3_DROME/180-233:0.42212):0.11949,((((HAND1_CHICK/84-136:0.11855,Q9VL05_DROME/59-111:0.45774):0.16869,((Q64305_RAT/163-215:0.19780,(TWST2_RAT/67-118:0.05526,(TWST_CAEEL/21-72:0.32800,Q9GNV2_PODCA/52-103:0.39323):0.16378):0.17355):0.09601,SCX_MOUSE/79-131:0.24092):0.03574):0.03899,(MUSC_HUMAN/108-160:0.16859,O18374_DROME/32-84:0.30720):0.16771):0.04584,(Q9JLR5_MOUSE/76-128:0.39685,Q24353_DROME/104-156:0.18037):0.18713):0.00955):0.06761):0.07123,((((Q22717_CAEEL/62-113:0.34162,Q25179_HYDAT/67-117:0.24764):0.21209,(((AST3_DROME/86-146:0.11065,O76488_JUNCO/77-138:0.32103):0.08566,(AST8_DROME/162-224:0.22280,AST5_DROME/27-91:0.24604):0.04467):0.07420,(Q98SF2_XENLA/47-98:0.31617,AST4_DROME/102-163:0.14828):0.07925):0.04966):0.16180,ASCL3_MOUSE/94-145:0.35449):0.06108,(((O45320_CAEEL/41-95:0.59933,HLH6_CAEEL/176-226:0.25571):0.07388,Q18612_CAEEL/24-78:0.45348):0.17306,(((Q25124_HALRO/243-294:0.25244,Q94816_TRISP/235-286:0.27562):0.10559,Q92001_XENLA/93-144:0.23345):0.12098,O93493_CYPCA/68-119:0.10862):0.31654):0.07993):0.14128):0.08831,((YMH7_CAEEL/113-164:0.33437,Q9JIZ5_MOUSE/49-100:0.12957):0.27053,(FIGLA_MOUSE/60-112:0.20322,Q9W7E6_ORYLA/51-103:0.44863):0.20158):0.14911):0.03062,(ID4_HUMAN/53-105:0.20654,((O42447_ONCMY/31-83:0.24269,ID1_HUMAN/56-106:0.16410):0.07654,ID2_HUMAN/24-76:0.14186):0.04919):0.14561):0.08758,((((TCFL5_HUMAN/353-406:0.79381,((MNT_HUMAN/221-272:0.25662,O46042_DROME/262-315:0.31640):0.05690,(Q62912_RAT/58-110:0.20925,((((Q21663_CAEEL/96-148:0.40487,Q9NDP3_CIOIN/57-109:0.20176):0.18447,MXI1_HUMAN/68-120:0.11388):0.08639,MAD_HUMAN/57-109:0.18452):0.17979,MAD4_HUMAN/54-106:0.08780):0.14793):0.21479):0.05377):0.14296,((Q06860_YEAST/251-307:0.39351,NUC1_NEUCR/668-758:0.31086):0.24528,MYC_DROME/626-678:0.54437):0.10014):0.04857,((((MYCL_XENLA/262-314:0.33174,MYCM_HUMAN/275-327:0.16540):0.03074,MYCL_HUMAN/282-334:0.01026):0.26057,((Q26649_STRPU/350-402:0.22144,MYC_ASTVU/322-374:0.25937):0.25530,(Q91421_ONCMY/311-364:0.29091,Q67004_FLV/282-334:0.21295):0.09975):0.05367):0.16113,(MAX_DROME/40-91:0.14652,(Q14803_HUMAN/24-75:0.22027,(Q18711_CAEEL/48-99:0.19838,P90982_CAEEL/30-83:0.34070):0.20722):0.12244):0.17144):0.12505):0.03733,((WBS14_MOUSE/662-716:0.22856,Q9BKE4_DROME/629-683:0.25729):0.23912,(MLX_MOUSE/130-188:0.35081,Q9GQP6_DROME/72-128:0.14631):0.08379):0.11961):0.01719):0.07689,(Q25428_LYTVA/215-270:0.45743,Q9W4J8_DROME/255-343:0.28015):0.18673):0.09032,(((HEY1_CANFA/52-105:0.24733,Q9U9U4_DROME/103-156:0.15578):0.07460,((Q9U450_DROME/63-118:0.39807,BHLH2_MOUSE/54-108:0.40257):0.06693,((Q91635_XENLA/35-92:0.13776,(((Q90465_BRARE/17-73:0.29941,Q9JHC5_MOUSE/19-75:0.19208):0.06283,((Q9DF73_BRARE/14-71:0.41798,Q9W7B6_XENLA/13-70:0.17532):0.12435,((Q90467_BRARE/7-64:0.20612,Q9W7B5_XENLA/27-84:0.27921):0.11522,Q90463_BRARE/13-70:0.20299):0.04939):0.16084):0.03568,(O16853_CAEEL/22-79:0.45587,((Q9DEU7_BRARE/22-74:0.23041,(Q90466_BRARE/20-74:0.23761,((Q9PTN9_XENLA/2-56:0.22504,HES5_MOUSE/19-73:0.12337):0.02519,Q9PTN8_XENLA/21-75:0.16732):0.05706):0.13557):0.05172,HES6_MOUSE/28-78:0.37353):0.07015):0.03235):0.06900):0.08875,(((ESM3_DROME/12-69:0.06627,(ESM8_DROHY/11-66:0.40652,ESM7_DROME/14-69:0.09672):0.10221):0.09760,ESMD_DROME/16-73:0.21806):0.14907,(((HES2_HUMAN/14-71:0.18465,Q99JA6_MOUSE/13-70:0.27716):0.09194,Q9VJ16_DROME/51-115:0.21392):0.06921,DPN_DROME/41-98:0.21422):0.04179):0.00758):0.14967):0.10220):0.15516,((((BMAL1_HUMAN/73-126:0.13051,Q9H2M4_HUMAN/74-127:0.37186):0.16429,CYCL_DROME/31-84:0.24855):0.07591,Q98SK3_BRARE/46-99:0.21514):0.15729,(O44118_DROME/37-90:0.17566,Q9VXW7_DROME/8-61:0.25597):0.35517):0.14924):0.09285):0.06905,((Q9XX00_CAEEL/356-406:0.51068,Q98SH5_CHICK/177-227:0.19536):0.04554,Q24146_DROME/284-334:0.23836):0.22092):0.20966,(RTG1_YEAST/12-97:0.43866,(((Q92242_KLULA/180-254:0.13162,TYE7_YEAST/181-266:0.19710):0.19466,((Q9UUD1_SCHPO/261-333:0.25692,O43019_SCHPO/427-496:0.22432):0.07895,Q12398_YEAST/267-342:0.26090):0.13148):0.12498,MITF_HUMAN/312-365:0.35374):0.06746):0.05084):0.10409,Q9TZ70_CAEEL/48-102:0.56700):0.12716,(((Q9CAA4_ARATH/46-96:0.30733,Q9FMB6_ARATH/34-86:0.15124):0.29943,WBS14_CAEEL/804-857:0.47392):0.09168,(((Q9LYT0_ARATH/257-306:0.23281,Q9SQ79_PINTA/477-526:0.39667):0.09499,RTG3_YEAST/286-345:0.45279):0.11885,(((O23297_ARATH/125-176:0.19551,Q9FH37_ARATH/72-123:0.30165):0.37105,Q9FN69_ARATH/438-487:0.32257):0.19672,(Q22069_CAEEL/14-64:0.38967,Q19918_CAEEL/45-96:0.34101):0.31585):0.05952):0.07966):0.07535):0.03626,(ESC1_SCHPO/335-386:0.33715,Q9H8R3_HUMAN/594-645:0.50644):0.29721):0.24088,((O82599_ARATH/113-176:0.12934,Q9M270_ARATH/176-227:0.21599):0.04030,((Q9FKQ6_ARATH/100-151:0.30218,Q9C7T4_ARATH/123-174:0.12423):0.06094,Q9FK20_ARATH/100-151:0.24709):0.04381):0.19609):0.13488,(Q9SUB6_ARATH/12-64:0.38633,(Q9SZK7_ARATH/1318-1381:0.56315,(Q9FLI1_ARATH/2-54:0.16505,(Q9LN89_ARATH/75-127:0.21600,Q9LQ08_ARATH/74-126:0.09114):0.15149):0.22838):0.13770):0.08241):0.28664,Q9FYE6_ARATH/66-118:0.23406):0.08673,Q9M1K0_ARATH/77-129:0.07279,Q9ZVB5_ARATH/62-114:0.13371);