Programme
A printable version of the programme is available here. For a printable list of the talks' abstracts, please click here. For a printable list of the posters' abstracts, please click here.
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Tuesday April 10th 2012
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11:00 - 13:30
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Registration
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12:00 - 13:20
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Lunch break
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13:20 - 13:30
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Introduction by Martin Vingron
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Evolution + Systems Biology
Chair: Peter Arndt
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13:30 - 13:50
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Richard Golstein - Modelling epistasis in protein evolution: The evolutionary Stokes shift
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13:50 - 14:10
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Jaime Irano - Effect of genomic population dynamics on the genealogy of insertion sequences
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14:10 - 14:30
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Carina Mugal - The evolution of GC content in avian genomes
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14:30 - 14:50
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Elke Schaper - Statistical evaluation of tandem repeat detection algorithms and tandem repeat classification
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14:50 - 15:10
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Adam MacLean - Population dynamics of normal and leukaemia stem cells in the haematopoietic stem cell niche
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15:10 - 15:30
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Juliane Liepe - Bayesian experimental design to probe cellular decision making processes
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15:30 - 16:30
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Coffee break + Poster session / discussion
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Medical applications
Chair: Gabriele Schweikert
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16:30 - 16:50
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Erika Cule - Ridge regression for risk prediction with applications to genetic data
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16:50 - 17:10
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Alexander Zien - Transfer Learning for Cancer Theranostics
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17:10 - 17:30
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Navodit Misra - Learning Gene Networks Underlying Somatic Mutations in Cancer
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17:30 - 17:50
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Tomas Martin-Bertelsen - Application of Random Survival Forests on Gene Set Scores for Gastric Cancer Prognosis and Biological Interpretation
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17:50 - 18:15
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Applications and vote for MASAMB 2013's location
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20:00 - 00:00
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Dinner
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Wednesday April 11th 2012
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Next Generation Sequencing I
Chair: Martin Vingron
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09:00 - 09:20
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Michael Nothnagel - Assessing technology-specific error signatures in next-generation sequencing, with an application to the 1000 Genomes Project data
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09:20 - 09:40
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Hugues Richard - Fiona: A tool for automatic correction of sequencing errors in genome sequencing experiments
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09:40 - 10:00
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Marcel Schulz - A probabilistic method for RNA-Seq read error correction
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10:00 - 10:20
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Thorsten Dickhaus - The allele distribution in next-generation sequencing data sets is accurately described as the result of a stochastic branching process
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10:20 - 10:50
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Coffee break
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Next Generation Sequencing II
Chair: Hugues Richard
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10:50 - 11:10
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Michael Love - Normalization of DNase-seq data for classification of cell types
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11:10 - 11:30
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Gabriele Schweikert - Detection of statistical significant differences in ChIP-seq data
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11:30 - 11:50
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Yanchun Bao - A Bayesian bidirectional Hidden Markov model for ChIP sequencing data
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11:50 - 12:00
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Group photo
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12:00 - 13:20
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Lunch break
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Transcription
Chair: Roland Krause
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13:20 - 13:40
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Mirauta Bogdan - Sequencial Monte Carlo - Particle Gibbs inference of Transcriptional Landscape from RNA-Seq Data
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13:40 - 14:00
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Ciira Maina - Modeling RNA Pol-II Dynamics
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14:00 - 14:30
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Julien Gagneur & Oliver Stegle - Joint models of gene expression and global phenotypes in the context of genetic and environmental variations
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14:30 - 14:50
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Nicolo Fusi - Finding topics in diseases through the analysis of RNA-seq data
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14:50 - 15:50
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Coffee break + Poster session / discussion
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General statistics
Chair: Thorsten Dickhaus
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15:50 - 16:10
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Vladislav Vyshemirsky - Evidential model ranking without likelihoods
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16:10 - 16:30
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Andre Beinrucker - The Effect of Subsample Size in Stability Selection
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16:30 - 16:50
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Sven Rahmann - Using Log-Concave Functions to Describe Peaks in Spectrometry Data
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16:50 - 17:00
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Closing remarks by Martin Vingron
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Talk format
Each slot is 20 minutes, however we recommend you keep 2 minutes free at the end for questions / change of microphone etc. Due to a tight shedule, we will have to be strict about time.
We will provide a PC with Windows XP. Microsoft Office 2007 and Acrobat Reader 9. Nevertheless the files should preferably be platform-independent, ie in pdf format. Even if PowerPoint documents are supported, the layout formatting might come out differently when going from Mac or Linux to Windows due to incompatible versions of Office.
Please have a copy of your talk ready on a USB stick at the beginning of the break before your session. The speakers of the session "Evolution + Systems Biology" should come forward at 13:10 at the latest. The speakers of the session "Next Generation Sequencing I" should come forward at 08:50.
Poster format
Posters should ideally be of size A0 (841mm x 1189mm), and oriented "portrait".
Programme committee
Neil Lawrence, Sheffield University, Sheffield, UK
Magnus Rattray, Sheffield University, Sheffield, UK
Arndt von Haeseler, Centre for Integrative Bioinformatics, Vienna, Austria
Dirk Husmeier, Glasgow University, Glasgow, UK
Nick Goldman, European Bioinformatics Institute, Cambridge, UK
Alexander Zien, Molecular Health, Heidelberg, Germany
Hugues Richard, Paris VI (Pierre et Marie Curie) University, Paris, France
Martin Vingron, MPI for Molecular Genetics, Berlin, Germany
Peter Arndt, MPI for Molecular Genetics, Berlin, Germany
Julia Lasserre, MPI for Molecular Genetics, Berlin, Germany
Alena Mysickova, MPI for Molecular Genetics, Berlin, Germany
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