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Schedule
Thursday, March 29th
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11.30 |
Registration opens and poster set-up |
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|---|---|---|
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12.30-13.20 |
Buffet lunch and poster preview |
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| 13.20-15.30 | Opening Session: Phylogenetics 1 | |
| 13.20 | Welcome | |
| 13.30 |
Wolfgang Lehrach (Biomathematics
and Statistics Scotland) "Reversible jump MCMC for inference in phylogenetic factorial hidden Markov models" |
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| 14.00 |
Samuel Blanquart (LIRMM Montpellier) "Modeling protein evolution with a non-stationary mixture of Markovian processes of substitution" |
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| 14.30 |
Simon Whelan (University of Manchester) "Resampling strategies and tabu search in maximum likelihood phylogenetic tree estimation" |
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| 15.00 |
Alexandros Stamatakis (École
Polytechnique Fédérale de Lausanne) "Potential Algorithmic Solutions for Large-Scale Maximum Likelihood Phylogeny Estimation" |
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| 15.30-16.00 | Coffee and posters | |
| 16.00-18.00 | Networks and Systems 1 | |
| 16.00 |
Simon Lovell (University of Manchester) "Coevolution of Binding Partners in Protein Interaction Networks" |
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| 16.30 |
Michael Stumpf (Imperial
College London) "Statistical inferences from noisy and incomplete protein interaction network data" |
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| 17.00 |
David Wild (University of Warwick) "Identifying protein complexes from high-throughput protein interaction screens" |
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| 17.30 |
Tony Chiang (EMBL-European
Bioinformatics Institute) "A directed graph analysis of protein interactions" |
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| 18.00-19.00 | Poster session | |
| 20.00 | Conference Dinner at the Yang Sing |
Friday, March 30th
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08.30-10.30 |
Networks and Systems 2 |
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|---|---|---|
| 08.30 |
Adriano Werhli (Biomathematics and
Statistics Scotland) "Combining gene expression data and different sources of biological prior knowledge for inferring genetic regulatory networks with Bayesian networks" |
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| 09.00 |
Vladislav Vyshemirsky (University
of Glasgow) "Bayesian Analysis of the ERK Signalling Pathway" |
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| 09.30 |
Yi Zhang (Birkbeck College London) "An integrative machine learning approach to predicting dosR regulated genes in M. tuberculosis" |
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| 10.00 |
Ian Jeffrey (Conway Institute Dublin) "Integrating transcription factor binding site information with gene expression datasets" |
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| 10.30-11.00 | Coffee and posters | |
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11.00-13.00 |
Microarrays and Functional Genomics |
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| 11.00 |
Richard Bourgon (EMBL-European Bioinformatics
Institute) "Fine mapping of meiotic recombination events in S. cerevisiae using high-density tiling microarrays and semi-supervised learning" |
|
| 11.30 |
John Marioni (University
of Cambridge) "Breaking the waves: improved detection of copy number variation from microarray-based comparative genomic hybridisation" |
|
| 12.00 |
Vini Pereira (University
of Sussex) "Scale-free meta-analysis of microarrays and the relationship between gene expression and DNA sequence evolution" |
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| 12.30 |
Allen Rodrigo (University of Auckland) "A novel statistical model to identify biomarkers in 2D proteomic gels" |
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| 13.00-14.00 | Buffet lunch and posters | |
| 14.00-16.00 |
Phylogenetics 2 |
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| 14.00 |
Tim Massingham (EMBL-European Bioinformatics
Institute) "Nonparametric likelihood tests of phylogenetic hypotheses" |
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| 14.30 |
Ari Loytynoja (EMBL-European Bioinformatics
Institute) "Errors in multiple sequence alignments are reduced by correct treatment of insertions" |
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| 15.00 |
Andrea Fuehrer (presented by Arndt von Haeseler) (Centre for Integrative Bioinformatics Vienna) "A maximum-likelihood framework to infer gene duplication and deletion rates for gene families" |
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| 15.30 |
Tanja Gesell (Centre
for Integrative Bioinformatics Vienna) "A phylogenetic definition of structure" |