#AC.SeqVer. EntryVer. Ver.Date Taxid Description FJ905104.1 2 20111115 167955 'Rehmannia glutinosa' phytoplasma plasmid pPARG1 CP000838.1 6 20140516 329726 Acaryochloris marina MBIC11017 plasmid pREB1 CP000839.1 6 20140516 329726 Acaryochloris marina MBIC11017 plasmid pREB2 CP000840.1 6 20140516 329726 Acaryochloris marina MBIC11017 plasmid pREB3 CP000841.1 6 20140516 329726 Acaryochloris marina MBIC11017 plasmid pREB4 CP000842.1 6 20140516 329726 Acaryochloris marina MBIC11017 plasmid pREB5 CP000843.1 6 20140516 329726 Acaryochloris marina MBIC11017 plasmid pREB6 CP000844.1 6 20140516 329726 Acaryochloris marina MBIC11017 plasmid pREB7 CP000845.1 6 20140516 329726 Acaryochloris marina MBIC11017 plasmid pREB8 CP000846.1 6 20140516 329726 Acaryochloris marina MBIC11017 plasmid pREB9 AF110140.1 4 20070112 435 Acetobacter aceti pAC5 FN597255.1 2 20110602 104097 Acetobacter estunensis plasmid pGP2 AM922326.2 3 20120906 438 Acetobacter pasteurianus pGR7 plasmid, strain CCM 3610 U20550.1 4 20000304 438 Acetobacter pasteurianus plasmid pAP12875 HF677571.1 3 20150227 1266844 Acetobacter pasteurianus 386B plasmid Apa386Bp1 HF677572.1 3 20150227 1266844 Acetobacter pasteurianus 386B plasmid Apa386Bp2 HF677573.1 3 20150227 1266844 Acetobacter pasteurianus 386B plasmid Apa386Bp3 HF677574.1 3 20150227 1266844 Acetobacter pasteurianus 386B plasmid Apa386Bp4 HF677575.1 3 20150227 1266844 Acetobacter pasteurianus 386B plasmid Apa386Bp5 HF677576.1 3 20150227 1266844 Acetobacter pasteurianus 386B plasmid Apa386Bp6 HF677577.1 3 20150227 1266844 Acetobacter pasteurianus 386B plasmid Apa386Bp7 AP011122.1 2 20140713 634452 Acetobacter pasteurianus IFO 3283-01 plasmid pAPA01-011 AP011123.1 2 20140713 634452 Acetobacter pasteurianus IFO 3283-01 plasmid pAPA01-020 AP011124.1 2 20140713 634452 Acetobacter pasteurianus IFO 3283-01 plasmid pAPA01-030 AP011125.1 2 20140713 634452 Acetobacter pasteurianus IFO 3283-01 plasmid pAPA01-040 AP011126.1 2 20140713 634452 Acetobacter pasteurianus IFO 3283-01 plasmid pAPA01-050 AP011127.1 2 20140713 634452 Acetobacter pasteurianus IFO 3283-01 plasmid pAPA01-060 AP011164.1 2 20140713 634458 Acetobacter pasteurianus IFO 3283-01-42C plasmid pAPA42C_011 AP011165.1 2 20140713 634458 Acetobacter pasteurianus IFO 3283-01-42C plasmid pAPA42C_020 AP011166.1 2 20140713 634458 Acetobacter pasteurianus IFO 3283-01-42C plasmid pAPA42C_030 AP011167.1 2 20140713 634458 Acetobacter pasteurianus IFO 3283-01-42C plasmid pAPA42C_040 AP011168.1 2 20140713 634458 Acetobacter pasteurianus IFO 3283-01-42C plasmid pAPA42C_050 AP011169.1 2 20140713 634458 Acetobacter pasteurianus IFO 3283-01-42C plasmid pAPA42C_060 AP011129.1 2 20140713 634453 Acetobacter pasteurianus IFO 3283-03 plasmid pAPA03-010 AP011130.1 2 20140713 634453 Acetobacter pasteurianus IFO 3283-03 plasmid pAPA03-020 AP011131.1 2 20140713 634453 Acetobacter pasteurianus IFO 3283-03 plasmid pAPA03-030 AP011132.1 2 20140713 634453 Acetobacter pasteurianus IFO 3283-03 plasmid pAPA03-040 AP011133.1 2 20140713 634453 Acetobacter pasteurianus IFO 3283-03 plasmid pAPA03-050 AP011134.1 2 20140713 634453 Acetobacter pasteurianus IFO 3283-03 plasmid pAPA03-060 AP011136.1 2 20140713 634454 Acetobacter pasteurianus IFO 3283-07 plasmid pAPA07-010 AP011137.1 2 20140713 634454 Acetobacter pasteurianus IFO 3283-07 plasmid pAPA07-020 AP011138.1 2 20140713 634454 Acetobacter pasteurianus IFO 3283-07 plasmid pAPA07-030 AP011139.1 2 20140713 634454 Acetobacter pasteurianus IFO 3283-07 plasmid pAPA07-040 AP011140.1 2 20140713 634454 Acetobacter pasteurianus IFO 3283-07 plasmid pAPA07-050 AP011141.1 2 20140713 634454 Acetobacter pasteurianus IFO 3283-07 plasmid pAPA07-060 AP011171.1 2 20140713 634459 Acetobacter pasteurianus IFO 3283-12 plasmid pAPA12-014 AP011172.1 2 20140713 634459 Acetobacter pasteurianus IFO 3283-12 plasmid pAPA12-020 AP011173.1 2 20140713 634459 Acetobacter pasteurianus IFO 3283-12 plasmid pAPA12-030 AP011174.1 2 20140713 634459 Acetobacter pasteurianus IFO 3283-12 plasmid pAPA12-040 AP011175.1 2 20140713 634459 Acetobacter pasteurianus IFO 3283-12 plasmid pAPA12-050 AP011176.1 2 20140713 634459 Acetobacter pasteurianus IFO 3283-12 plasmid pAPA12-060 AP011143.1 2 20140713 634455 Acetobacter pasteurianus IFO 3283-22 plasmid pAPA22-010 AP011144.1 2 20140713 634455 Acetobacter pasteurianus IFO 3283-22 plasmid pAPA22-020 AP011145.1 2 20140713 634455 Acetobacter pasteurianus IFO 3283-22 plasmid pAPA22-030 AP011146.1 2 20140713 634455 Acetobacter pasteurianus IFO 3283-22 plasmid pAPA22-040 AP011147.1 2 20140713 634455 Acetobacter pasteurianus IFO 3283-22 plasmid pAPA22-050 AP011148.1 2 20140713 634455 Acetobacter pasteurianus IFO 3283-22 plasmid pAPA22-060 AP011150.1 2 20140713 634456 Acetobacter pasteurianus IFO 3283-26 plasmid pAPA26-013 AP011151.1 2 20140713 634456 Acetobacter pasteurianus IFO 3283-26 plasmid pAPA26-020 AP011152.1 2 20140713 634456 Acetobacter pasteurianus IFO 3283-26 plasmid pAPA26-030 AP011153.1 2 20140713 634456 Acetobacter pasteurianus IFO 3283-26 plasmid pAPA26-040 AP011154.1 2 20140713 634456 Acetobacter pasteurianus IFO 3283-26 plasmid pAPA26-050 AP011155.1 2 20140713 634456 Acetobacter pasteurianus IFO 3283-26 plasmid pAPA26-060 AP011157.1 2 20140713 634457 Acetobacter pasteurianus IFO 3283-32 plasmid pAPA32-012 AP011158.1 2 20140713 634457 Acetobacter pasteurianus IFO 3283-32 plasmid pAPA32-020 AP011159.1 2 20140713 634457 Acetobacter pasteurianus IFO 3283-32 plasmid pAPA32-030 AP011160.1 2 20140713 634457 Acetobacter pasteurianus IFO 3283-32 plasmid pAPA32-040 AP011161.1 2 20140713 634457 Acetobacter pasteurianus IFO 3283-32 plasmid pAPA32-050 AP011162.1 2 20140713 634457 Acetobacter pasteurianus IFO 3283-32 plasmid pAPA32-060 AY540995.2 10 20120207 32002 Achromobacter denitrificans strain EST4002 plasmid pEST4011 AJ515144.2 5 20061114 85698 Achromobacter xylosoxidans plasmid pA81 CP002288.1 5 20140515 762376 Achromobacter xylosoxidans A8 plasmid pA81 CP002289.1 4 20140515 762376 Achromobacter xylosoxidans A8 plasmid pA82 AJ225333.1 3 20061114 2283 Acidianus ambivalens plasmid pDL10 EU881703.1 2 20081231 563177 Acidianus hospitalis strain W1 plasmid pAH1 CP000689.1 7 20140515 349163 Acidiphilium cryptum JF-5 plasmid pACRY01 CP000690.1 8 20140515 349163 Acidiphilium cryptum JF-5 plasmid pACRY02 CP000691.1 7 20140515 349163 Acidiphilium cryptum JF-5 plasmid pACRY03 CP000692.1 5 20140515 349163 Acidiphilium cryptum JF-5 plasmid pACRY04 CP000693.1 5 20140515 349163 Acidiphilium cryptum JF-5 plasmid pACRY05 CP000694.1 4 20140515 349163 Acidiphilium cryptum JF-5 plasmid pACRY06 CP000695.1 5 20140515 349163 Acidiphilium cryptum JF-5 plasmid pACRY07 CP000696.1 4 20140515 349163 Acidiphilium cryptum JF-5 plasmid pACRY08 DQ499634.2 4 20070911 62140 Acidiphilium multivorum strain JCM8867 plasmid pAM5 AF325537.2 4 20050415 33059 Acidithiobacillus caldus plasmid pTC-F14 replicon EU421841.2 4 20080716 33059 Acidithiobacillus caldus plasmid pTcM1 X96982.1 5 20061114 920 Acidithiobacillus ferrooxidans plasmid pTF4.1 U73041.1 11 20100427 920 Acidithiobacillus ferrooxidans plasmid pTF5 CP000540.1 5 20140515 232721 Acidovorax sp. JS42 plasmid pAOVO01 CP000541.1 7 20140515 232721 Acidovorax sp. JS42 plasmid pAOVO02 EU294228.1 4 20081026 470 Acinetobacter baumannii plasmid pABIR FM210331.1 2 20090724 470 Acinetobacter baumannii plasmid pABVA01 strain VA-566/00 AY541809.1 4 20061114 470 Acinetobacter baumannii plasmid pMAC GQ377752.1 2 20100527 470 Acinetobacter baumannii plasmid pMMA2 GQ476987.1 2 20100527 470 Acinetobacter baumannii strain CU2 plasmid pMMCU2 AP014650.1 1 20141002 470 Acinetobacter baumannii plasmid pIOMTU433 DNA strain: IOMTU 433 CU459137.1 3 20150227 470 Acinetobacter baumannii str. AYE plasmid p1ABAYE CU459138.1 3 20150227 470 Acinetobacter baumannii str. AYE plasmid p2ABAYE CU459140.1 3 20150227 470 Acinetobacter baumannii str. AYE plasmid p3ABAYE CU459139.1 3 20150227 470 Acinetobacter baumannii str. AYE plasmid p4ABAYE HG380023.1 2 20131022 1149135 Acinetobacter baumannii 107m plasmid p1ABIBUN CP001183.1 2 20140131 480119 Acinetobacter baumannii AB0057 plasmid pAB0057 CP000864.1 6 20140515 405416 Acinetobacter baumannii ACICU plasmid pACICU1 CP000865.1 6 20140515 405416 Acinetobacter baumannii ACICU plasmid pACICU2 CP000522.1 6 20140515 400667 Acinetobacter baumannii ATCC 17978 plasmid pAB1 CP000523.1 6 20140515 400667 Acinetobacter baumannii ATCC 17978 plasmid pAB2 CU468231.1 5 20150227 509170 Acinetobacter baumannii SDF plasmid p1ABSDF CU468232.1 5 20150227 509170 Acinetobacter baumannii SDF plasmid p2ABSDF CU468233.1 5 20150227 509170 Acinetobacter baumannii SDF plasmid p3ABSDF GQ342610.1 2 20100527 471 Acinetobacter calcoaceticus strain Acal H12O-07 plasmid pMMCU1 AJ311718.1 2 20050415 156739 Acinetobacter sp. EB104 plasmid pAC450 AF003958.2 4 20131111 61312 Acinetobacter sp. SUN resistance plasmid pRAY DQ278485.1 2 20080205 52133 Acinetobacter venetianus plasmid pAV1 DQ278486.1 2 20080205 52133 Acinetobacter venetianus plasmid pAV2 AY359464.1 2 20060127 715 Actinobacillus pleuropneumoniae plasmid p9555 AY362554.1 2 20070714 715 Actinobacillus pleuropneumoniae plasmid p9956 DQ176855.1 2 20060127 715 Actinobacillus pleuropneumoniae plasmid p11745 DQ517426.1 2 20070718 715 Actinobacillus pleuropneumoniae plasmid p12494 AM748707.1 3 20080227 715 Actinobacillus pleuropneumoniae plasmid pARD3079 EU715370.1 3 20090208 715 Actinobacillus pleuropneumoniae plasmid pHB0503 AJ830714.1 2 20080227 715 Actinobacillus pleuropneumoniae plasmid pKMA2425 AB109805.1 4 20141114 715 Actinobacillus pleuropneumoniae plasmid pMS260 AJ877041.1 3 20080227 715 Actinobacillus pleuropneumoniae plasmid pPSAS1522 AF303375.1 3 20050415 715 Actinobacillus pleuropneumoniae plasmid pTYM1 CP001093.1 4 20140515 537457 Actinobacillus pleuropneumoniae serovar 7 str. AP76 plasmid ABB7_B CP001094.1 4 20140515 537457 Actinobacillus pleuropneumoniae serovar 7 str. AP76 plasmid APP7_A CP001092.1 4 20140515 537457 Actinobacillus pleuropneumoniae serovar 7 str. AP76 plasmid APP7_C AJ830711.1 3 20080227 189834 Actinobacillus porcitonsillarum plasmid pIMD50 AM748705.1 4 20080227 189834 Actinobacillus porcitonsillarum plasmid pKMA5 AM748706.1 4 20080227 189834 Actinobacillus porcitonsillarum plasmid pKMA202 AJ830710.1 3 20080227 189834 Actinobacillus porcitonsillarum plasmid pKMA505 AJ830713.1 3 20080227 189834 Actinobacillus porcitonsillarum plasmid pKMA757 AJ830712.1 3 20080227 189834 Actinobacillus porcitonsillarum plasmid pKMA1467 EF495198.1 3 20080619 105751 Aeromonas bestiarum plasmid pAb5S9 CR376602.1 4 20081023 648 Aeromonas caviae plasmid pFBAOT6 AP012343.1 2 20120725 1156800 Aeromonas dhakensis AAK1 plasmid pAAk1 DQ402049.1 1 20060308 644 Aeromonas hydrophila plasmid pAH3680 EU925817.1 2 20111115 644 Aeromonas hydrophila plasmid pBRST7.6 FJ705807.1 2 20090717 644 Aeromonas hydrophila plasmid pRA1 DQ401103.1 5 20080813 644 Aeromonas hydrophila plasmid pRA3 AY043299.1 6 20061114 645 Aeromonas salmonicida plasmid pRAS3.2 AJ508382.1 4 20081023 29491 Aeromonas salmonicida subsp. salmonicida plasmid pAsal1 AJ508383.1 3 20061114 29491 Aeromonas salmonicida subsp. salmonicida plasmid pAsal2 AJ508384.1 2 20060904 29491 Aeromonas salmonicida subsp. salmonicida plasmid pAsal3 AM258965.2 5 20090423 29491 Aeromonas salmonicida subsp. salmonicida plasmid pAsal5 AY043298.1 6 20061114 29491 Aeromonas salmonicida subsp. salmonicida plasmid pRAS3.1 CP000645.1 5 20140515 382245 Aeromonas salmonicida subsp. salmonicida A449 plasmid 4 CP000646.1 5 20140515 382245 Aeromonas salmonicida subsp. salmonicida A449 plasmid 5 AY301063.1 8 20140515 382245 Aeromonas salmonicida subsp. salmonicida A449 plasmid pAsa1 AY301064.1 8 20140515 382245 Aeromonas salmonicida subsp. salmonicida A449 plasmid pAsa2 AY301065.1 8 20140515 382245 Aeromonas salmonicida subsp. salmonicida A449 plasmid pAsa3 AF302424.1 4 20050415 714 Aggregatibacter actinomycetemcomitans plasmid pVT745 GQ866234.1 3 20140501 668336 Aggregatibacter actinomycetemcomitans D11S-1 plasmid S25 GQ866235.1 3 20140501 668336 Aggregatibacter actinomycetemcomitans D11S-1 plasmid S57 AE007872.2 11 20140515 176299 Agrobacterium fabrum str. C58 (Cereon) plasmid AT AE007871.2 8 20140515 176299 Agrobacterium fabrum str. C58 (Cereon) plasmid Ti AP002086.1 9 20080118 359 Agrobacterium rhizogenes plasmid pRi1724 EU186381.1 1 20071101 359 Agrobacterium rhizogenes plasmid pRi2659 CP000632.1 6 20140515 311403 Agrobacterium radiobacter K84 plasmid pAgK84 CP000630.1 6 20140515 311403 Agrobacterium radiobacter K84 plasmid pAtK84b CP000631.1 6 20140515 311403 Agrobacterium radiobacter K84 plasmid pAtK84c AF242881.1 5 20061223 358 Agrobacterium tumefaciens octopine-type Ti plasmid AY442931.2 4 20060608 358 Agrobacterium tumefaciens plasmid pAgK84 AB016260.1 7 20070921 358 Agrobacterium tumefaciens plasmid pTi-SAKURA AF126445.1 2 20000303 358 Agrobacterium tumefaciens plasmid pTiC58 DQ058764.1 1 20070601 358 Agrobacterium tumefaciens Ti plasmid pTiBo542 CP000639.1 6 20140515 311402 Agrobacterium vitis S4 plasmid pAtS4a CP000635.1 6 20140515 311402 Agrobacterium vitis S4 plasmid pAtS4b CP000636.1 6 20140515 311402 Agrobacterium vitis S4 plasmid pAtS4c CP000638.1 6 20140515 311402 Agrobacterium vitis S4 plasmid pAtS4e CP000637.1 6 20140515 311402 Agrobacterium vitis S4 plasmid pTiS4 CP001728.1 3 20131216 521098 Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 plasmid pAACI01 CP001729.1 3 20131216 521098 Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 plasmid pAACI02 CP001730.1 3 20131216 521098 Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 plasmid pAACI03 AY465897.1 2 20050826 668 Aliivibrio fischeri plasmid pES213 CP000022.1 7 20140515 312309 Vibrio fischeri ES114 plasmid pES100 CP001134.1 7 20140515 388396 Vibrio fischeri MJ11 plasmid pMJ100 FM178384.1 6 20150206 316275 Aliivibrio salmonicida LFI1238 plasmid pVSAL43 FM178383.1 8 20150206 316275 Aliivibrio salmonicida LFI1238 plasmid pVSAL54 FM178382.1 7 20150206 316275 Aliivibrio salmonicida LFI1238 plasmid pVSAL320 FM178381.1 7 20150206 316275 Aliivibrio salmonicida LFI1238 plasmid pVSAL840 CP001897.1 5 20140515 572477 Allochromatium vinosum DSM 180 plasmid pALVIN01 CP001898.1 5 20140515 572477 Allochromatium vinosum DSM 180 plasmid pALVIN02 EU727537.1 2 20081229 538945 Alpha proteobacterium endosymbiont of Amoeba proteus plasmid pAP3.9 CP001786.1 4 20140515 429009 Ammonifex degensii KC4 plasmid pADEG01 EF375609.1 3 20110816 346045 Amycolatopsis benzoatilytica strain DSM 43387 plasmid pA387 EU149765.1 1 20080523 33910 Amycolatopsis mediterranei plasmid pMEA100 CP000119.1 9 20140515 240292 Anabaena variabilis ATCC 29413 plasmid A CP000120.1 6 20140515 240292 Anabaena variabilis ATCC 29413 plasmid B CP000121.1 9 20140515 240292 Anabaena variabilis ATCC 29413 plasmid C CP001709.1 3 20131212 525919 Anaerococcus prevotii DSM 20548 plasmid pAPRE01 AE000667.1 10 20140515 224324 Aquifex aeolicus VF5 plasmid ece1 FJ707368.1 1 20090701 84156 Archaeoglobus profundus strain AV18 plasmid pGS5 CP001858.1 3 20140102 572546 Archaeoglobus profundus DSM 5631 plasmid pArcpr01 GU722198.1 2 20101121 795325 Archaeon enrichment culture clone 1(2010) plasmid hyperthermophilic archaeal plasmid 1 EU707943.1 1 20090602 28197 Arcobacter butzleri strain NCTC12481 plasmid AP012049.1 2 20111116 944547 Arcobacter sp. L plasmid pABL CR555307.1 6 20150227 76114 Aromatoleum aromaticum EbN1 plasmid 1 CR555308.1 6 20150227 76114 Aromatoleum aromaticum EbN1 plasmid 2 FQ311475.1 3 20150227 256701 Arthrobacter arilaitensis RE117, plasmid pRE117-1 FQ311476.1 3 20150227 256701 Arthrobacter arilaitensis RE117, plasmid pRE117-2 CP000475.1 6 20140515 290340 Arthrobacter aurescens TC1 plasmid TC1 CP000476.1 7 20140515 290340 Arthrobacter aurescens TC1 plasmid TC2 CP001342.1 3 20140515 452863 Arthrobacter chlorophenolicus A6 plasmid pACHL01 CP001343.1 3 20140515 452863 Arthrobacter chlorophenolicus A6 plasmid pACHL02 EF495211.1 2 20080318 415095 Arthrobacter sp. AK-1 plasmid pSI-1 EF495212.1 2 20080318 447032 Arthrobacter sp. Chr15 plasmid pChr15 CP000455.1 7 20140515 290399 Arthrobacter sp. FB24 plasmid 1 CP000456.1 7 20140515 290399 Arthrobacter sp. FB24 plasmid 2 CP000457.1 8 20140515 290399 Arthrobacter sp. FB24 plasmid 3 CP003205.1 5 20140515 1118963 Arthrobacter sp. Rue61a plasmid pAL1 AB064396.1 4 20090219 35779 Aster yellows phytoplasma plasmid CP000062.1 6 20140515 322098 Aster yellows witches'-broom phytoplasma AYWB plasmid pAYWB-I CP000063.1 6 20140515 322098 Aster yellows witches'-broom phytoplasma AYWB plasmid pAYWB-II CP000064.1 6 20140515 322098 Aster yellows witches'-broom phytoplasma AYWB plasmid pAYWB-III CP000065.1 6 20140515 322098 Aster yellows witches'-broom phytoplasma AYWB plasmid pAYWB-IV CP002397.1 4 20140516 573065 Asticcacaulis excentricus CB 48 plasmid pASTEX01 CP002398.1 4 20140516 573065 Asticcacaulis excentricus CB 48 plasmid pASTEX02 AY300023.1 1 20031106 728 Avibacterium paragallinarum plasmid p250 EF015636.1 2 20070831 728 Avibacterium paragallinarum plasmid pYMH5 AP012305.1 1 20111202 748247 Azoarcus sp. KH32C plasmid pAZKH HE577328.1 3 20150227 1064539 Azospirillum brasilense Sp245 plasmid AZOBR_p1 HE577329.1 3 20150227 1064539 Azospirillum brasilense Sp245 plasmid AZOBR_p2 HE577330.1 3 20150227 1064539 Azospirillum brasilense Sp245 plasmid AZOBR_p3 HE577331.1 3 20150227 1064539 Azospirillum brasilense Sp245 plasmid AZOBR_p4 HE577332.1 3 20150227 1064539 Azospirillum brasilense Sp245 plasmid AZOBR_p5 HE577333.1 3 20150227 1064539 Azospirillum brasilense Sp245 plasmid AZOBR_p6 FQ311869.1 3 20120110 862719 Azospirillum lipoferum 4B plasmid AZO_p1 FQ311870.1 3 20120110 862719 Azospirillum lipoferum 4B plasmid AZO_p2 FQ311871.1 3 20120110 862719 Azospirillum lipoferum 4B plasmid AZO_p3 FQ311872.1 3 20120110 862719 Azospirillum lipoferum 4B plasmid AZO_p4 FQ311873.1 3 20120110 862719 Azospirillum lipoferum 4B plasmid AZO_p5 FQ311874.1 4 20140713 862719 Azospirillum lipoferum 4B plasmid AZO_p6 AP010947.1 2 20101223 137722 Azospirillum sp. B510 plasmid pAB510a AP010948.1 2 20101223 137722 Azospirillum sp. B510 plasmid pAB510b AP010949.1 2 20101223 137722 Azospirillum sp. B510 plasmid pAB510c AP010950.1 2 20101223 137722 Azospirillum sp. B510 plasmid pAB510d AP010951.1 2 20101223 137722 Azospirillum sp. B510 plasmid pAB510e AP010952.1 2 20101223 137722 Azospirillum sp. B510 plasmid pAB510f GU937616.1 2 20110323 1390 Bacillus amyloliquefaciens plasmid pBSG3 HG514500.1 2 20150227 1385727 Bacillus amyloliquefaciens subsp. plantarum NAU-B3 plasmid pBamNAU-B3a AF188935.1 3 20050415 1392 Bacillus anthracis plasmid pXO2 AF065404.1 7 20100401 1392 Bacillus anthracis virulence plasmid PX01 AE017336.2 9 20140515 261594 Bacillus anthracis str. 'Ames Ancestor' plasmid pXO1 AE017335.3 9 20140515 261594 Bacillus anthracis str. 'Ames Ancestor' plasmid pXO2 CP001599.1 6 20140515 592021 Bacillus anthracis str. A0248 plasmid pXO1 CP001597.1 6 20140515 592021 Bacillus anthracis str. A0248 plasmid pXO2 AE011190.1 5 20140107 191218 Bacillus anthracis str. A2012 plasmid pXO1 AE011191.1 5 20140107 191218 Bacillus anthracis str. A2012 plasmid pXO2 CP001216.1 6 20140515 568206 Bacillus anthracis str. CDC 684 plasmid pX01 CP001214.1 6 20140515 568206 Bacillus anthracis str. CDC 684 plasmid pX02 CP007513.1 1 20140501 658666 Bacillus bombysepticus plasmid pBb AB083655.3 5 20080409 1396 Bacillus cereus plasmid pBC-Tim DQ889676.1 3 20070823 1396 Bacillus cereus strain AH187 plasmid pCER270 DQ889678.1 3 20070823 1396 Bacillus cereus strain AH818 plasmid pPER272 DQ889677.1 3 20070823 1396 Bacillus cereus strain AH820 plasmid pPER272 DQ889679.1 1 20070805 1396 Bacillus cereus strain G9241 plasmid pBC210 DQ889680.1 1 20070805 1396 Bacillus cereus strain G9241 plasmid pBCXO1 U32369.1 5 20110313 1396 Bacillus cereus, Plasmid pBC16 CP001406.1 8 20140515 572264 Bacillus cereus 03BB102 plasmid p03BB102_179 CP001181.1 6 20140515 405534 Bacillus cereus AH187 plasmid pAH187_3 CP001178.1 6 20140515 405534 Bacillus cereus AH187 plasmid pAH187_12 CP001180.1 6 20140515 405534 Bacillus cereus AH187 plasmid pAH187_45 CP001179.1 6 20140515 405534 Bacillus cereus AH187 plasmid pAH187_270 CP001284.1 5 20140515 405535 Bacillus cereus AH820 plasmid pAH820_3 CP001286.1 5 20140515 405535 Bacillus cereus AH820 plasmid pAH820_10 CP001285.1 5 20140515 405535 Bacillus cereus AH820 plasmid pAH820_272 AE017195.1 9 20140515 222523 Bacillus cereus ATCC 10987 plasmid pBc10987 AE016878.2 10 20140515 226900 Bacillus cereus ATCC 14579 plasmid pBClin15 CP001749.1 5 20140515 637380 Bacillus cereus biovar anthracis str. CI plasmid pBAslCI14 CP001747.1 5 20140515 637380 Bacillus cereus biovar anthracis str. CI plasmid pCI-XO1 CP001748.1 5 20140515 637380 Bacillus cereus biovar anthracis str. CI plasmid pCI-XO2 CP000041.1 5 20140515 288681 Bacillus cereus E33L plasmid pE33L5 CP000043.1 5 20140515 288681 Bacillus cereus E33L plasmid pE33L8 CP000044.1 5 20140515 288681 Bacillus cereus E33L plasmid pE33L9 CP000042.1 5 20140515 288681 Bacillus cereus E33L plasmid pE33L54 CP000040.1 5 20140515 288681 Bacillus cereus E33L plasmid pE33L466 CP001188.1 4 20140515 405531 Bacillus cereus G9842 plasmid pG9842_140 CP001187.1 4 20140515 405531 Bacillus cereus G9842 plasmid pG9842_209 CP001171.1 1 20081014 451708 Bacillus cereus H3081.97 plasmid pH308197_3 CP001168.1 1 20081014 451708 Bacillus cereus H3081.97 plasmid pH308197_10 CP001167.1 1 20081014 451708 Bacillus cereus H3081.97 plasmid pH308197_11 CP001169.1 1 20081014 451708 Bacillus cereus H3081.97 plasmid pH308197_29 CP001170.1 1 20081014 451708 Bacillus cereus H3081.97 plasmid pH308197_73 CP001166.1 1 20081014 451708 Bacillus cereus H3081.97 plasmid pH308197_258 CP000229.1 4 20140515 361100 Bacillus cereus Q1 plasmid pBc53 CP000228.1 4 20140515 361100 Bacillus cereus Q1 plasmid pBc239 EF015591.1 3 20070613 1398 Bacillus coagulans plasmid pMSR0 CP000765.1 5 20140515 315749 Bacillus cytotoxicus NVH 391-98 plasmid pBC9801 AJ577854.1 2 20040430 1402 Bacillus licheniformis plasmid pFL5 AJ577855.1 2 20040430 1402 Bacillus licheniformis plasmid pFL7 AJ748844.1 3 20061114 1402 Bacillus licheniformis, plasmid pBL63.1 CP001984.1 5 20140515 545693 Bacillus megaterium QM B1551 plasmid pBM100 CP001985.1 5 20140515 545693 Bacillus megaterium QM B1551 plasmid pBM200 CP001986.1 5 20140515 545693 Bacillus megaterium QM B1551 plasmid pBM300 CP001987.1 5 20140515 545693 Bacillus megaterium QM B1551 plasmid pBM400 CP001988.1 5 20140515 545693 Bacillus megaterium QM B1551 plasmid pBM500 CP001989.1 5 20140515 545693 Bacillus megaterium QM B1551 plasmid pBM600 CP001990.1 5 20140515 545693 Bacillus megaterium QM B1551 plasmid pBM700 AY386314.1 4 20050416 1471 Bacillus methanolicus strain MGA3 plasmid pBM19 AJ272266.1 3 20051003 1405 Bacillus mycoides cryptic plasmid pBMYdx AJ243967.1 2 20011115 1405 Bacillus mycoides plasmid pBMY1 AJ871638.1 7 20060210 1405 Bacillus mycoides plasmid pDx14.2 AJ871637.1 7 20060210 1405 Bacillus mycoides plasmid pSin9.7 CP001879.1 7 20140515 398511 Bacillus pseudofirmus OF4 plasmid pBpOF4-01 CP001880.1 7 20140515 398511 Bacillus pseudofirmus OF4 plasmid pBpOF4-02 AF036712.1 1 19971219 1408 Bacillus pumilus plasmid pPL10 AY230134.1 2 20050416 1408 Bacillus pumilus plasmid pPL7065 GU144016.1 3 20101008 1408 Bacillus pumilus plasmid pPZZ84 X15670.1 8 20050418 1409 Bacillus sp. plasmid pTB913 AB040121.1 2 20050609 119423 Bacillus sp. B-3 plasmid pA01 GU591497.1 2 20100826 745376 Bacillus sp. BS-01 plasmid pBS-01 HQ128580.1 2 20110519 887059 Bacillus sp. BS-02 plasmid pBS-02 AB125215.1 1 20101021 253629 Bacillus sp. JAMB750 plasmid pJAM1 AF091592.1 4 20050415 1423 Bacillus subtilis plasmid p1414 AY836798.1 1 20041220 1423 Bacillus subtilis plasmid pBS608 M13761.1 4 20121101 1423 Bacillus subtilis plasmid pIM13 AB243053.1 1 20060921 1423 Bacillus subtilis plasmid pLS30 U32379.1 11 20050417 1423 Bacillus subtilis plasmid pTA1015 U32378.1 12 20050417 1423 Bacillus subtilis plasmid pTA1040 U32380.1 9 20030911 1423 Bacillus subtilis plasmid pTA1060 DQ140187.1 1 20050820 1423 Bacillus subtilis strain ATCC 15841 plasmid pPL1 AP011542.1 3 20100907 645657 Bacillus subtilis subsp. natto BEST195 plasmid pBEST195S AY126018.1 2 20061117 1428 Bacillus thuringiensis DAN-involved plasmid S49203.1 2 20040901 1428 Bacillus thuringiensis kurstaki plasmid HD-3a3b DQ363750.1 2 20070111 1428 Bacillus thuringiensis plasmid pBMB67 AF202532.3 4 20070925 1428 Bacillus thuringiensis plasmid pBMB9741 EU362917.1 3 20091019 1428 Bacillus thuringiensis plasmid pFR12 EU362918.1 2 20091006 1428 Bacillus thuringiensis plasmid pFR12.5 Y11173.1 4 20010310 1428 Bacillus thuringiensis plasmid pGI3 X56204.1 28 19961007 1428 Bacillus thuringiensis plasmid pTX14-3 AY138808.1 3 20031126 1428 Bacillus thuringiensis strain 4Q2 plasmid pTX14-2 EU362919.1 2 20091006 1428 Bacillus thuringiensis strain INTA-FR7-4 plasmid pFR55 EF406356.1 2 20091107 1428 Bacillus thuringiensis strain K1 plasmid pK1S1 CP001904.1 8 20150211 714359 Bacillus thuringiensis BMB171 plasmid pBMB171 AY822042.1 2 20051028 132264 Bacillus thuringiensis serovar darmstadiensis plasmid pBMBt1 AF516904.1 2 20050415 1436 Bacillus thuringiensis serovar entomocidus plasmid pUIBI-1 AL731825.1 5 20081023 1430 Bacillus thuringiensis serovar israelensis plasmid pBtoxis U67921.1 2 19990705 1430 Bacillus thuringiensis serovar israelensis plasmid pTX14-1 CP000047.1 6 20140515 281309 Bacillus thuringiensis serovar konkukian str. 97-27 plasmid pBT9727 DQ025752.1 3 20061114 29339 Bacillus thuringiensis serovar kurstaki plasmid pAW63 AF050161.1 2 20000303 29339 Bacillus thuringiensis serovar kurstaki plasmid pBMB2062 HM991869.1 1 20100827 29339 Bacillus thuringiensis serovar kurstaki plasmid pBMB2062-HD1 EU130936.1 2 20091120 570416 Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB7635 DQ364061.1 2 20070614 1444 Bacillus thuringiensis serovar tenebrionis plasmid pBMB175 AY138809.1 3 20031126 1432 Bacillus thuringiensis serovar thuringiensis strain H1.1 plasmid pGI1 CP000486.1 7 20140515 412694 Bacillus thuringiensis str. Al Hakam, plasmid pALH1 CP000904.1 4 20131212 315730 Bacillus weihenstephanensis KBAB4 plasmid pBWB401 CP000905.1 4 20131212 315730 Bacillus weihenstephanensis KBAB4 plasmid pBWB402 CP000906.1 4 20131212 315730 Bacillus weihenstephanensis KBAB4 plasmid pBWB403 CP000907.1 4 20131212 315730 Bacillus weihenstephanensis KBAB4 plasmid pBWB404 GU722199.1 2 20101121 795322 Bacterium enrichment culture clone 1(2010) plasmid hyperthermophilic bacterial plasmid 1 GU722200.1 2 20101121 795323 Bacterium enrichment culture clone 2a(2010) plasmid hyperthermophilic bacterial plasmid 2a GU722201.1 2 20101121 795324 Bacterium enrichment culture clone 2b(2010) plasmid hyperthermophilic bacterial plasmid 2b DQ859906.2 4 20100309 817 Bacteroides fragilis plasmid pBFP35 AB646744.1 2 20131121 817 Bacteroides fragilis plasmid pBFUK1 DNA strain: GAI92082 U30316.1 5 20030704 817 Bacteroides fragilis strain IB143 plasmid pBI143 CR626928.1 9 20150206 272559 Bacteroides fragilis NCTC 9343 plasmid pBF9343 AP006842.1 6 20070519 295405 Bacteroides fragilis YCH46 plasmid pBFY46 AY171301.1 11 20140515 226186 Bacteroides thetaiotaomicron VPI-5482 plasmid p5483 AF238307.1 2 20031008 820 Bacteroides uniformis insertion sequence NBU1 AJ439506.1 3 20081023 33045 Bartonella grahamii cryptic plasmid pBGR2 AJ422079.1 4 20061114 33045 Bartonella grahamii cryptic plasmid pBRG1 CP001563.1 5 20140515 634504 Bartonella grahamii as4aup plasmid pBGR3 GU173851.1 1 20110427 596995 Bartonella sp. TT0105 plasmid pTT0105 EU595645.1 1 20080420 85701 Bartonella tribocorum plasmid pKM19s HG969193.1 2 20150227 85701 Bartonella tribocorum plasmid BM1374166 strain BM1374166 AM260524.1 6 20150227 382640 Bartonella tribocorum CIP 105476 plasmid PlasmidBtr AY423627.1 1 20040609 37694 Beet leafhopper transmitted virescence phytoplasma plasmid pBLTVA-1 AY423628.1 1 20040609 37694 Beet leafhopper transmitted virescence phytoplasma plasmid pBLTVA-2 CP001017.1 4 20140515 395963 Beijerinckia indica subsp. indica ATCC 9039 plasmid pBIND01 CP001018.1 4 20140515 395963 Beijerinckia indica subsp. indica ATCC 9039 plasmid pBIND02 AM183225.1 2 20060717 47735 Bibersteinia trehalosi plasmid pCCK13698 EU030683.1 2 20080105 1684 Bifidobacterium asteroides plasmid pCIBAO89 DQ305402.1 3 20081005 1681 Bifidobacterium bifidum plasmid pB80 DQ497626.1 3 20081005 1685 Bifidobacterium breve plasmid pB21a AF085719.1 2 20000303 1685 Bifidobacterium breve plasmid pCIBb1 DQ011664.1 1 20050515 1686 Bifidobacterium catenulatum plasmid pBC1 DQ458910.1 1 20061101 216816 Bifidobacterium longum plasmid p6043A DQ458911.1 1 20061101 216816 Bifidobacterium longum plasmid p6043B AY066026.1 4 20070910 216816 Bifidobacterium longum plasmid pB44 AY210701.1 1 20050501 216816 Bifidobacterium longum plasmid pMG1 AB187597.1 3 20050414 216816 Bifidobacterium longum plasmid pTB6 DQ452864.1 3 20091111 216816 Bifidobacterium longum strain FI10564 plasmid pFI2576 AY112723.1 3 20050416 216816 Bifidobacterium longum strain RW041 plasmid PNAC2 AY112722.1 2 20040311 216816 Bifidobacterium longum strain RW041 plasmid pNAC3 AY112724.1 3 20050416 216816 Bifidobacterium longum strain RW048 plasmid pNAC1 AF538868.1 6 20140515 205913 Bifidobacterium longum DJO10A plasmid pDOJH10L AF538869.1 5 20140515 205913 Bifidobacterium longum DJO10A plasmid pDOJH10S AF540971.1 12 20140515 206672 Bifidobacterium longum NCC2705 plasmid pBLO1 AF139129.1 2 20050415 1679 Bifidobacterium longum subsp. longum plasmid pKJ36 U76614.1 4 20050418 1679 Bifidobacterium longum subsp. longum plasmid pKJ50 AF359574.1 2 20070216 28026 Bifidobacterium pseudocatenulatum plasmid p4M DQ103758.1 3 20070911 1690 Bifidobacterium pseudolongum subsp. globosum plasmid pASV479 DQ286581.1 2 20071212 359132 Bifidobacterium sp. A24 plasmid pBIFA24 BN000925.1 4 20081023 35419 TPA: Birmingham IncP-alpha plasmid, isolate RK2 CP001430.1 7 20140515 600809 Blattabacterium sp. (Periplaneta americana) str. BPLAN plasmid pBPLAN AB237782.1 3 20070113 520 Bordetella pertussis plasmid pBP136 CP001250.1 2 20111129 445986 Borrelia afzelii ACA-1 plasmid cp26 CP001243.1 2 20111129 445986 Borrelia afzelii ACA-1 plasmid cp32-1 CP001237.1 2 20111129 445986 Borrelia afzelii ACA-1 plasmid cp32-3 CP001240.1 2 20111129 445986 Borrelia afzelii ACA-1 plasmid cp32-4 CP001248.1 2 20111129 445986 Borrelia afzelii ACA-1 plasmid cp32-5 CP001239.1 2 20111129 445986 Borrelia afzelii ACA-1 plasmid lp17 CP001238.1 2 20111129 445986 Borrelia afzelii ACA-1 plasmid lp28-1 CP001244.1 2 20111129 445986 Borrelia afzelii ACA-1 plasmid lp28-2 CP001241.1 2 20111129 445986 Borrelia afzelii ACA-1 plasmid lp28-3 CP001249.1 2 20111129 445986 Borrelia afzelii ACA-1 plasmid lp28-4 CP001242.1 2 20111129 445986 Borrelia afzelii ACA-1 plasmid lp28-7 CP001245.1 2 20111129 445986 Borrelia afzelii ACA-1 plasmid lp32-10 CP001246.1 2 20111129 445986 Borrelia afzelii ACA-1 plasmid lp38 CP001247.1 2 20111129 445986 Borrelia afzelii ACA-1 plasmid lp54 CP000402.1 5 20140501 390236 Borrelia afzelii PKo plasmid cp27 CP000400.1 5 20140501 390236 Borrelia afzelii PKo plasmid cp30 CP000403.1 5 20140501 390236 Borrelia afzelii PKo plasmid lp25 CP000401.1 5 20140501 390236 Borrelia afzelii PKo plasmid lp28 CP000404.1 3 20090325 390236 Borrelia afzelii PKo plasmid lp31 fragment a CP000405.1 3 20090325 390236 Borrelia afzelii PKo plasmid lp31 fragment b CP000406.1 3 20090325 390236 Borrelia afzelii PKo plasmid lp31 fragment c CP000399.1 5 20140501 390236 Borrelia afzelii PKo plasmid lp32 CP000398.1 5 20140501 390236 Borrelia afzelii PKo plasmid lp34 CP000396.1 4 20140501 390236 Borrelia afzelii PKo plasmid lp60 CP000397.1 5 20140501 390236 Borrelia afzelii PKo plasmid lp60-2 CP000014.1 5 20140131 290434 Borrelia garinii PBi plasmid cp26 CP000015.1 6 20140131 290434 Borrelia garinii PBi plasmid lp54 AF169008.1 3 20100401 139 Borrelia burgdorferi circular plasmid cp18-2 U03641.1 4 20081018 139 Borrelia burgdorferi Ip21 circular plasmid U43414.1 3 19990705 139 Borrelia burgdorferi linear plasmid lp16 CP001422.1 2 20120523 498740 Borrelia burgdorferi 64b plasmid 64b_cp26 CP001414.1 2 20120523 498740 Borrelia burgdorferi 64b plasmid 64b_cp32-1 CP001418.1 2 20120523 498740 Borrelia burgdorferi 64b plasmid 64b_cp32-3-8 CP001411.1 2 20120523 498740 Borrelia burgdorferi 64b plasmid 64b_cp32-4 CP001415.1 2 20120523 498740 Borrelia burgdorferi 64b plasmid 64b_cp32-5 CP001427.1 2 20120523 498740 Borrelia burgdorferi 64b plasmid 64b_cp32-6 CP001416.1 2 20120523 498740 Borrelia burgdorferi 64b plasmid 64b_cp32-7 CP001424.1 2 20120523 498740 Borrelia burgdorferi 64b plasmid 64b_cp32-9 CP001426.1 2 20120523 498740 Borrelia burgdorferi 64b plasmid 64b_cp32-11 CP001413.1 2 20120523 498740 Borrelia burgdorferi 64b plasmid 64b_lp17 CP001423.1 2 20120523 498740 Borrelia burgdorferi 64b plasmid 64b_lp28-1 CP001420.1 2 20120523 498740 Borrelia burgdorferi 64b plasmid 64b_lp28-2 CP001417.1 2 20120523 498740 Borrelia burgdorferi 64b plasmid 64b_lp28-3 CP001428.1 2 20120523 498740 Borrelia burgdorferi 64b plasmid 64b_lp28-4 CP001412.1 2 20120523 498740 Borrelia burgdorferi 64b plasmid 64b_lp28-5 CP001425.1 2 20120523 498740 Borrelia burgdorferi 64b plasmid 64b_lp36 CP001419.1 2 20120523 498740 Borrelia burgdorferi 64b plasmid 64b_lp38 CP001421.1 2 20120523 498740 Borrelia burgdorferi 64b plasmid 64b_lp54 CP001375.1 2 20120523 476211 Borrelia burgdorferi 72a plasmid 72a_cp26 CP001381.1 2 20120523 476211 Borrelia burgdorferi 72a plasmid 72a_cp32-1 CP001373.1 3 20120523 476211 Borrelia burgdorferi 72a plasmid 72a_cp32-2-7 CP001378.1 3 20120523 476211 Borrelia burgdorferi 72a plasmid 72a_cp32-3 CP001376.1 2 20120523 476211 Borrelia burgdorferi 72a plasmid 72a_cp32-5 CP001379.1 2 20120523 476211 Borrelia burgdorferi 72a plasmid 72a_cp32-10 CP001372.1 2 20120523 476211 Borrelia burgdorferi 72a plasmid 72a_cp32-12 CP001371.1 2 20120523 476211 Borrelia burgdorferi 72a plasmid 72a_cp32-13 CP001382.1 2 20120523 476211 Borrelia burgdorferi 72a plasmid 72a_lp17 CP001380.1 2 20120523 476211 Borrelia burgdorferi 72a plasmid 72a_lp28-4 CP001374.1 2 20120523 476211 Borrelia burgdorferi 72a plasmid 72a_lp36 CP001377.1 2 20120523 476211 Borrelia burgdorferi 72a plasmid 72a_lp38 CP001370.1 2 20120523 476211 Borrelia burgdorferi 72a plasmid 72a_lp54 CP001501.1 2 20120523 476212 Borrelia burgdorferi 94a plasmid 94a_cp9 CP001493.1 2 20120523 476212 Borrelia burgdorferi 94a plasmid 94a_cp26 CP001496.1 2 20120523 476212 Borrelia burgdorferi 94a plasmid 94a_cp32-5 CP001499.1 2 20120523 476212 Borrelia burgdorferi 94a plasmid 94a_cp32-6 CP001492.1 2 20120523 476212 Borrelia burgdorferi 94a plasmid 94a_cp32-7 CP001498.1 2 20120523 476212 Borrelia burgdorferi 94a plasmid 94a_cp32-10 CP001491.1 2 20120523 476212 Borrelia burgdorferi 94a plasmid 94a_cp32-11 CP001497.1 2 20120523 476212 Borrelia burgdorferi 94a plasmid 94a_lp17 CP001502.1 2 20120523 476212 Borrelia burgdorferi 94a plasmid 94a_lp28-3 CP001490.1 2 20120523 476212 Borrelia burgdorferi 94a plasmid 94a_lp28-4 CP001494.1 2 20120523 476212 Borrelia burgdorferi 94a plasmid 94a_lp36 CP001500.1 2 20120523 476212 Borrelia burgdorferi 94a plasmid 94a_lp54 CP001495.1 2 20120523 476212 Borrelia burgdorferi 94a plasmid 94a_lp56 CP001533.1 2 20120523 476210 Borrelia burgdorferi 118a plasmid 118a_cp9 CP001535.1 2 20120523 476210 Borrelia burgdorferi 118a plasmid 118a_cp26 CP001538.1 2 20120523 476210 Borrelia burgdorferi 118a plasmid 118a_cp32-4 CP001536.1 2 20120523 476210 Borrelia burgdorferi 118a plasmid 118a_cp32-5 CP001528.1 2 20120523 476210 Borrelia burgdorferi 118a plasmid 118a_cp32-6 CP001526.1 2 20120523 476210 Borrelia burgdorferi 118a plasmid 118a_cp32-7-9 CP001525.1 2 20120523 476210 Borrelia burgdorferi 118a plasmid 118a_cp32-8 CP001534.1 2 20120523 476210 Borrelia burgdorferi 118a plasmid 118a_cp32-10 CP001543.1 2 20120523 476210 Borrelia burgdorferi 118a plasmid 118a_cp32-13 CP001527.1 2 20120523 476210 Borrelia burgdorferi 118a plasmid 118a_lp17 CP001532.1 2 20120523 476210 Borrelia burgdorferi 118a plasmid 118a_lp25 CP001540.1 2 20120523 476210 Borrelia burgdorferi 118a plasmid 118a_lp28-3 CP001541.1 2 20120523 476210 Borrelia burgdorferi 118a plasmid 118a_lp28-4 CP001529.1 2 20120523 476210 Borrelia burgdorferi 118a plasmid 118a_lp28-5 CP001531.1 2 20120523 476210 Borrelia burgdorferi 118a plasmid 118a_lp28-6 CP001530.1 2 20120523 476210 Borrelia burgdorferi 118a plasmid 118a_lp32-3 CP001537.1 2 20120523 476210 Borrelia burgdorferi 118a plasmid 118a_lp36 CP001539.1 2 20120523 476210 Borrelia burgdorferi 118a plasmid 118a_lp38 CP001542.1 2 20120523 476210 Borrelia burgdorferi 118a plasmid 118a_lp54 CP001271.1 2 20120523 445983 Borrelia burgdorferi 156a plasmid 156a_cp26 CP001261.1 2 20120523 445983 Borrelia burgdorferi 156a plasmid 156a_cp32-1 CP001264.1 2 20120523 445983 Borrelia burgdorferi 156a plasmid 156a_cp32-3 CP001263.1 2 20120523 445983 Borrelia burgdorferi 156a plasmid 156a_cp32-4 CP001259.1 2 20120523 445983 Borrelia burgdorferi 156a plasmid 156a_cp32-6 CP001268.1 2 20120523 445983 Borrelia burgdorferi 156a plasmid 156a_cp32-7 CP001269.1 2 20120523 445983 Borrelia burgdorferi 156a plasmid 156a_cp32-8 CP001270.1 2 20120523 445983 Borrelia burgdorferi 156a plasmid 156a_cp32-11 CP001266.1 2 20120523 445983 Borrelia burgdorferi 156a plasmid 156a_cp32-12 CP001258.1 2 20120523 445983 Borrelia burgdorferi 156a plasmid 156a_lp17 CP001265.1 2 20120523 445983 Borrelia burgdorferi 156a plasmid 156a_lp25 CP001273.1 2 20120523 445983 Borrelia burgdorferi 156a plasmid 156a_lp28-1 CP001256.1 2 20120523 445983 Borrelia burgdorferi 156a plasmid 156a_lp28-3 CP001272.1 2 20120523 445983 Borrelia burgdorferi 156a plasmid 156a_lp28-4 CP001274.1 2 20120523 445983 Borrelia burgdorferi 156a plasmid 156a_lp28-5 CP001262.1 2 20120523 445983 Borrelia burgdorferi 156a plasmid 156a_lp28-6 CP001260.1 2 20120523 445983 Borrelia burgdorferi 156a plasmid 156a_lp36 CP001267.1 2 20120523 445983 Borrelia burgdorferi 156a plasmid 156a_lp38 CP001257.1 2 20120523 445983 Borrelia burgdorferi 156a plasmid 156a_lp54 CP001653.1 2 20120413 521009 Borrelia burgdorferi 297 plasmid 297_lp54 CP001550.1 2 20120523 498738 Borrelia burgdorferi 29805 plasmid 29805_cp26 CP001556.1 2 20120523 498738 Borrelia burgdorferi 29805 plasmid 29805_cp32-4 CP001546.1 2 20120523 498738 Borrelia burgdorferi 29805 plasmid 29805_cp32-5 CP001558.1 2 20120523 498738 Borrelia burgdorferi 29805 plasmid 29805_cp32-7 CP001549.1 2 20120523 498738 Borrelia burgdorferi 29805 plasmid 29805_cp32-9 CP001545.1 2 20120523 498738 Borrelia burgdorferi 29805 plasmid 29805_cp32-12 CP001551.1 2 20120523 498738 Borrelia burgdorferi 29805 plasmid 29805_lp17 CP001553.1 2 20120523 498738 Borrelia burgdorferi 29805 plasmid 29805_lp25 CP001559.1 2 20120523 498738 Borrelia burgdorferi 29805 plasmid 29805_lp28-2 CP001547.1 2 20120523 498738 Borrelia burgdorferi 29805 plasmid 29805_lp28-3 CP001552.1 2 20120523 498738 Borrelia burgdorferi 29805 plasmid 29805_lp28-4 CP001555.1 2 20120523 498738 Borrelia burgdorferi 29805 plasmid 29805_lp28-6 CP001557.1 2 20120523 498738 Borrelia burgdorferi 29805 plasmid 29805_lp36 CP001548.1 2 20120523 498738 Borrelia burgdorferi 29805 plasmid 29805_lp38 CP001554.1 2 20120523 498738 Borrelia burgdorferi 29805 plasmid 29805_lp54 AE000791.1 14 20140515 224326 Borrelia burgdorferi B31 plasmid cp9 AE000792.1 14 20140515 224326 Borrelia burgdorferi B31 plasmid cp26 AE001575.1 16 20140515 224326 Borrelia burgdorferi B31 plasmid cp32-1 AE001576.1 15 20140515 224326 Borrelia burgdorferi B31 plasmid cp32-3 AE001577.1 16 20140515 224326 Borrelia burgdorferi B31 plasmid cp32-4 AE001578.1 16 20140515 224326 Borrelia burgdorferi B31 plasmid cp32-6 AE001579.1 16 20140515 224326 Borrelia burgdorferi B31 plasmid cp32-7 AE001580.1 15 20140515 224326 Borrelia burgdorferi B31 plasmid cp32-8 AE001581.1 16 20140515 224326 Borrelia burgdorferi B31 plasmid cp32-9 AE001583.1 13 20140515 224326 Borrelia burgdorferi B31 plasmid lp5 AE000793.2 12 20141008 224326 Borrelia burgdorferi B31 plasmid lp17 AE001582.2 14 20140515 224326 Borrelia burgdorferi B31 plasmid lp21 AE000785.1 13 20140515 224326 Borrelia burgdorferi B31 plasmid lp25 AE000794.2 12 20140515 224326 Borrelia burgdorferi B31 plasmid lp28-1 AE000786.1 12 20141008 224326 Borrelia burgdorferi B31 plasmid lp28-2 AE000784.1 12 20141008 224326 Borrelia burgdorferi B31 plasmid lp28-3 AE000789.1 13 20141008 224326 Borrelia burgdorferi B31 plasmid lp28-4 AE000788.1 12 20141008 224326 Borrelia burgdorferi B31 plasmid lp36 AE000787.1 13 20141008 224326 Borrelia burgdorferi B31 plasmid lp38 AE000790.2 13 20141008 224326 Borrelia burgdorferi B31 plasmid lp54 AE001584.1 15 20140515 224326 Borrelia burgdorferi B31 plasmid lp56 CP001568.1 2 20120523 445984 Borrelia burgdorferi Bol26 plasmid Bol26_cp26 CP001572.1 2 20120523 445984 Borrelia burgdorferi Bol26 plasmid Bol26_cp32-5 CP001570.1 2 20120523 445984 Borrelia burgdorferi Bol26 plasmid Bol26_cp32-9 CP001565.1 2 20120523 445984 Borrelia burgdorferi Bol26 plasmid Bol26_cp32-12 CP001564.1 2 20120523 445984 Borrelia burgdorferi Bol26 plasmid Bol26_lp17 CP001566.1 3 20120523 445984 Borrelia burgdorferi Bol26 plasmid Bol26_lp28-1 CP001573.1 2 20120523 445984 Borrelia burgdorferi Bol26 plasmid Bol26_lp28-3 CP001569.1 2 20120523 445984 Borrelia burgdorferi Bol26 plasmid Bol26_lp28-4 CP001567.1 2 20120523 445984 Borrelia burgdorferi Bol26 plasmid Bol26_lp36 CP001571.1 2 20120523 445984 Borrelia burgdorferi Bol26 plasmid Bol26_lp54 CP001484.1 2 20120523 498739 Borrelia burgdorferi CA-11.2a plasmid CA-11.2A_cp26 CP001479.1 2 20120523 498739 Borrelia burgdorferi CA-11.2a plasmid CA-11.2A_cp32-1 CP001483.1 2 20120523 498739 Borrelia burgdorferi CA-11.2a plasmid CA-11.2A_cp32-3 CP001475.1 2 20120523 498739 Borrelia burgdorferi CA-11.2a plasmid CA-11.2A_cp32-5 CP001477.1 2 20120523 498739 Borrelia burgdorferi CA-11.2a plasmid CA-11.2A_cp32-10 CP001478.1 2 20120523 498739 Borrelia burgdorferi CA-11.2a plasmid CA-11.2A_cp32-13 CP001481.1 2 20120523 498739 Borrelia burgdorferi CA-11.2a plasmid CA-11.2A_lp17 CP001482.1 2 20120523 498739 Borrelia burgdorferi CA-11.2a plasmid CA-11.2A_lp28-3 CP001480.1 2 20120523 498739 Borrelia burgdorferi CA-11.2a plasmid CA-11.2A_lp36-28-4 CP001476.1 2 20120523 498739 Borrelia burgdorferi CA-11.2a plasmid CA-11.2A_lp38 CP001473.1 2 20120523 498739 Borrelia burgdorferi CA-11.2a plasmid CA-11.2A_lp54 CP001474.1 2 20120523 498739 Borrelia burgdorferi CA-11.2a plasmid CA-11.2A_lp56 CP001652.1 4 20140516 521008 Borrelia burgdorferi JD1 plasmid JD1_lp54 CP001651.1 4 20140516 521007 Borrelia burgdorferi N40 plasmid N40_lp54 CP001460.1 2 20120523 498737 Borrelia burgdorferi WI91-23 plasmid WI91-23_cp9-3 CP001446.1 2 20120523 498737 Borrelia burgdorferi WI91-23 plasmid WI91-23_cp26 CP001445.1 2 20120523 498737 Borrelia burgdorferi WI91-23 plasmid WI91-23_cp32-1 CP001444.1 2 20120523 498737 Borrelia burgdorferi WI91-23 plasmid WI91-23_cp32-4 CP001453.1 2 20120523 498737 Borrelia burgdorferi WI91-23 plasmid WI91-23_cp32-5 CP001450.1 2 20120523 498737 Borrelia burgdorferi WI91-23 plasmid WI91-23_cp32-6 CP001457.1 2 20120523 498737 Borrelia burgdorferi WI91-23 plasmid WI91-23_cp32-7 CP001449.1 2 20120523 498737 Borrelia burgdorferi WI91-23 plasmid WI91-23_cp32-10 CP001451.1 2 20120523 498737 Borrelia burgdorferi WI91-23 plasmid WI91-23_cp32-11 CP001462.1 2 20120523 498737 Borrelia burgdorferi WI91-23 plasmid WI91-23_lp5 CP001461.1 2 20120523 498737 Borrelia burgdorferi WI91-23 plasmid WI91-23_lp17 CP001459.1 2 20120523 498737 Borrelia burgdorferi WI91-23 plasmid WI91-23_lp25 CP001456.1 2 20120523 498737 Borrelia burgdorferi WI91-23 plasmid WI91-23_lp28-1 CP001452.1 2 20120523 498737 Borrelia burgdorferi WI91-23 plasmid WI91-23_lp28-3 CP001454.1 2 20120523 498737 Borrelia burgdorferi WI91-23 plasmid WI91-23_lp28-4 CP001455.1 2 20120523 498737 Borrelia burgdorferi WI91-23 plasmid WI91-23_lp28-6 CP001448.1 2 20120523 498737 Borrelia burgdorferi WI91-23 plasmid WI91-23_lp36 CP001458.1 2 20120523 498737 Borrelia burgdorferi WI91-23 plasmid WI91-23_lp38 CP001447.1 2 20120523 498737 Borrelia burgdorferi WI91-23 plasmid WI91-23_lp54 CP001443.1 2 20120523 498737 Borrelia burgdorferi WI91-23 plasmid WI91-23_lp56 CP001212.1 6 20140515 445985 Borrelia burgdorferi ZS7 plasmid ZS7_cp26 CP001206.1 6 20140515 445985 Borrelia burgdorferi ZS7 plasmid ZS7_cp32-1 CP001202.1 6 20140515 445985 Borrelia burgdorferi ZS7 plasmid ZS7_cp32-3+10 CP001208.1 6 20140515 445985 Borrelia burgdorferi ZS7 plasmid ZS7_cp32-4 CP001211.1 6 20140515 445985 Borrelia burgdorferi ZS7 plasmid ZS7_cp32-9 CP001200.1 6 20140515 445985 Borrelia burgdorferi ZS7 plasmid ZS7_cp32-12 CP001204.1 6 20140515 445985 Borrelia burgdorferi ZS7 plasmid ZS7_lp17 CP001198.1 6 20140515 445985 Borrelia burgdorferi ZS7 plasmid ZS7_lp25 CP001210.1 6 20140515 445985 Borrelia burgdorferi ZS7 plasmid ZS7_lp28-1 CP001209.1 6 20140515 445985 Borrelia burgdorferi ZS7 plasmid ZS7_lp28-2 CP001203.1 6 20140515 445985 Borrelia burgdorferi ZS7 plasmid ZS7_lp28-3 CP001207.1 6 20140515 445985 Borrelia burgdorferi ZS7 plasmid ZS7_lp28-4 CP001201.1 6 20140515 445985 Borrelia burgdorferi ZS7 plasmid ZS7_lp36 CP001199.1 6 20140515 445985 Borrelia burgdorferi ZS7 plasmid ZS7_lp54 AB073701.1 4 20070705 40834 Borrelia duttonii plasmid DNA strain Ly CP000978.1 2 20140202 412419 Borrelia duttonii Ly plasmid pl15 CP000982.1 2 20140202 412419 Borrelia duttonii Ly plasmid pl26 CP000983.1 2 20140202 412419 Borrelia duttonii Ly plasmid pl27 CP000984.1 2 20140202 412419 Borrelia duttonii Ly plasmid pl28 CP000991.1 2 20140202 412419 Borrelia duttonii Ly plasmid pl31 CP000992.1 2 20140202 412419 Borrelia duttonii Ly plasmid pl32 CP000985.1 2 20140202 412419 Borrelia duttonii Ly plasmid pl35 CP000987.1 2 20140202 412419 Borrelia duttonii Ly plasmid pl40 CP000989.1 2 20140202 412419 Borrelia duttonii Ly plasmid pl42 CP000990.1 2 20140202 412419 Borrelia duttonii Ly plasmid pl70 CP000979.1 2 20140202 412419 Borrelia duttonii Ly plasmid pl165 CP001522.1 2 20110303 498741 Borrelia finlandensis SV1 plasmid SV1_cp26 CP001517.1 2 20110303 498741 Borrelia finlandensis SV1 plasmid SV1_cp32-3 CP001520.1 2 20110303 498741 Borrelia finlandensis SV1 plasmid SV1_cp32-4 CP001521.1 2 20110303 498741 Borrelia finlandensis SV1 plasmid SV1_cp32-7 CP001519.1 2 20110303 498741 Borrelia finlandensis SV1 plasmid SV1_lp17 CP001518.1 2 20110303 498741 Borrelia finlandensis SV1 plasmid SV1_lp28-2 CP001523.1 2 20110303 498741 Borrelia finlandensis SV1 plasmid SV1_lp28-4 CP001516.1 2 20110303 498741 Borrelia finlandensis SV1 plasmid SV1_lp32-12 CP001524.1 1 20090324 498741 Borrelia finlandensis SV1 plasmid SV1_lp54 CP003201.1 5 20140515 1081646 Borrelia garinii BgVir plasmid cp26 CP003202.1 5 20140515 1081646 Borrelia garinii BgVir plasmid lp54 CP001319.1 2 20111129 519049 Borrelia garinii Far04 plasmid Far04_cp26 CP001315.1 2 20111129 519049 Borrelia garinii Far04 plasmid Far04_lp17 CP001317.1 2 20111129 519049 Borrelia garinii Far04 plasmid Far04_lp25 CP001316.1 2 20111129 519049 Borrelia garinii Far04 plasmid Far04_lp28-1 CP001320.1 2 20111129 519049 Borrelia garinii Far04 plasmid Far04_lp32-10 CP001314.1 2 20111129 519049 Borrelia garinii Far04 plasmid Far04_lp36 CP001318.1 2 20111129 519049 Borrelia garinii Far04 plasmid Far04_lp54 CP001305.1 2 20111129 498743 Borrelia garinii PBr plasmid PBr_cp26 CP001303.1 2 20111129 498743 Borrelia garinii PBr plasmid PBr_cp32-5 CP001306.1 2 20111129 498743 Borrelia garinii PBr plasmid PBr_cp32-10 CP001309.1 2 20111129 498743 Borrelia garinii PBr plasmid PBr_lp17 CP001301.1 1 20090110 498743 Borrelia garinii PBr plasmid PBr_lp25 CP001310.1 2 20111129 498743 Borrelia garinii PBr plasmid PBr_lp28-1 CP001307.1 2 20111129 498743 Borrelia garinii PBr plasmid PBr_lp28-3 CP001304.1 2 20111129 498743 Borrelia garinii PBr plasmid PBr_lp28-4 CP001311.1 2 20111129 498743 Borrelia garinii PBr plasmid PBr_lp28-7 CP001302.1 2 20111129 498743 Borrelia garinii PBr plasmid PBr_lp36 CP001308.1 2 20111129 498743 Borrelia garinii PBr plasmid PBr_lp54 CP000281.1 3 20150213 314723 Borrelia hermsii HS1 plasmid fragment 983 CP000274.1 3 20150213 314723 Borrelia hermsii HS1 plasmid fragment 1025rc CP000279.1 3 20150213 314723 Borrelia hermsii HS1 plasmid fragment 1029 CP000275.1 3 20150213 314723 Borrelia hermsii HS1 plasmid fragment 1034rc CP000273.1 3 20150213 314723 Borrelia hermsii HS1 plasmid fragment 1046T CP000276.1 3 20150213 314723 Borrelia hermsii HS1 plasmid fragment 1047L CP000277.1 3 20150213 314723 Borrelia hermsii HS1 plasmid fragment 1047R CP000278.1 3 20150213 314723 Borrelia hermsii HS1 plasmid fragment 1050 CP000280.1 3 20150213 314723 Borrelia hermsii HS1 plasmid fragment 1051L CP001000.1 1 20080917 412418 Borrelia recurrentis A1 plasmid pl6 CP000995.1 1 20080917 412418 Borrelia recurrentis A1 plasmid pl23 CP000996.1 1 20080917 412418 Borrelia recurrentis A1 plasmid pl33 CP000997.1 1 20080917 412418 Borrelia recurrentis A1 plasmid pl35 CP000998.1 1 20080917 412418 Borrelia recurrentis A1 plasmid pl37 CP000999.1 1 20080917 412418 Borrelia recurrentis A1 plasmid pl53 CP000994.1 1 20080917 412418 Borrelia recurrentis A1 plasmid pl124 CP001467.1 2 20120106 498742 Borrelia spielmanii A14S plasmid A14S_cp26 CP001468.1 2 20120106 498742 Borrelia spielmanii A14S plasmid A14S_lp17 CP001471.1 2 20120106 498742 Borrelia spielmanii A14S plasmid A14S_lp28-3 CP001470.1 2 20120106 498742 Borrelia spielmanii A14S plasmid A14S_lp28-4 CP001465.1 2 20120106 498742 Borrelia spielmanii A14S plasmid A14S_lp28-8 CP001466.1 2 20120106 498742 Borrelia spielmanii A14S plasmid A14S_lp36 CP001464.1 2 20120106 498742 Borrelia spielmanii A14S plasmid A14S_lp38 CP001469.1 2 20120106 498742 Borrelia spielmanii A14S plasmid A14S_lp54 CP001438.1 3 20140107 445987 Borrelia valaisiana VS116 plasmid VS116_cp9 CP001432.1 2 20140107 445987 Borrelia valaisiana VS116 plasmid VS116_cp26 CP001434.1 3 20140107 445987 Borrelia valaisiana VS116 plasmid VS116_cp32-2-7 CP001441.1 3 20140107 445987 Borrelia valaisiana VS116 plasmid VS116_cp32-5 CP001435.1 3 20140107 445987 Borrelia valaisiana VS116 plasmid VS116_cp32-10 CP001439.1 3 20140107 445987 Borrelia valaisiana VS116 plasmid VS116_lp17 CP001437.1 3 20140107 445987 Borrelia valaisiana VS116 plasmid VS116_lp25 CP001440.1 3 20140107 445987 Borrelia valaisiana VS116 plasmid VS116_lp28-3 CP001442.1 3 20140107 445987 Borrelia valaisiana VS116 plasmid VS116_lp28-8 CP001436.1 3 20140107 445987 Borrelia valaisiana VS116 plasmid VS116_lp36 CP001433.1 3 20140107 445987 Borrelia valaisiana VS116 plasmid VS116_lp54 CP001360.1 4 20140515 565034 Brachyspira hyodysenteriae WA1 plasmid pBHWA1 AP014686.1 1 20150416 1355477 Bradyrhizobium diazoefficiens plasmid pNK6b DNA, strain: NK6 AP014687.1 1 20150416 1355477 Bradyrhizobium diazoefficiens plasmid pNK6c DNA, strain: NK6 AP014688.1 1 20150416 1355477 Bradyrhizobium diazoefficiens plasmid pNK6d DNA, strain: NK6 CP000495.1 7 20140515 288000 Bradyrhizobium sp. BTAi1 plasmid pBBta01 D43692.1 9 20060227 45462 Brevibacillus borstelensis plasmid pHT926 AY004211.1 3 20051006 1703 Brevibacterium linens plasmid LIM M18262.1 13 20070115 2543 Plasmid pCU1 from Escherichia coli AF012911.1 5 20070115 64374 Plasmid pETHIS-1 L31578.1 6 20081018 35400 Plasmid pRJF2 from Butyrivibrio fibrisolvens U55819.2 5 20120302 47575 Plasmid pRL765 U55385.2 6 20120302 47574 Plasmid pRL1063a M37273.1 4 20070115 2655 Plasmid pUB110, from Staphylococcus aureus K00053.1 5 20070115 2507 Plasmid Rts1 from Escherichia coli AJ404864.1 2 20061114 9 Buchnera aphidicola plasmid pBPS1 AY546103.1 1 20060322 9 Buchnera aphidicola plasmid pleu-BTg AF041837.1 4 20050415 9 Buchnera aphidicola plasmid pLeu-Dn AF041836.1 5 20050415 98794 Buchnera aphidicola (Schizaphis graminum) plasmid pLeu-Sg AY438025.1 12 20140515 372461 Buchnera aphidicola BCc, strain BCce plasmid pLeu-BCc AP001071.1 9 20090424 107806 Buchnera aphidicola str. APS (Acyrthosiphon pisum) plasmid pLeu AP001070.1 8 20081203 107806 Buchnera aphidicola str. APS (Acyrthosiphon pisum) plasmid pTrp AF492591.1 10 20140515 224915 Buchnera aphidicola str. Bp (Baizongia pistaciae) plasmid pBBp1 CP002700.1 3 20140605 1009857 Buchnera aphidicola str. W106 (Myzus persicae) plasmid pLeu CP000443.1 5 20140515 339670 Burkholderia ambifaria AMMD plasmid 1 CP001028.1 4 20140515 398577 Burkholderia ambifaria MC40-6 plasmid pBMC401 CP000461.1 5 20131212 331272 Burkholderia cenocepacia HI2424 plasmid 1 AM747723.1 7 20150206 216591 Burkholderia cenocepacia J2315 plasmid pBCJ2315 X61927.1 5 19930720 292 Burkholderia cepacia plasmid PPC1 DQ996270.1 1 20070402 337 Burkholderia glumae strain BGR1 plasmid pBGF2 DQ996271.1 1 20070402 337 Burkholderia glumae strain BGR1 plasmid pBGF3 CP001505.1 5 20140515 626418 Burkholderia glumae BGR1 plasmid bglu_1p CP001506.1 5 20140515 626418 Burkholderia glumae BGR1 plasmid bglu_2p CP001507.2 5 20140515 626418 Burkholderia glumae BGR1 plasmid bglu_3p CP001508.2 5 20140515 626418 Burkholderia glumae BGR1 plasmid bglu_4p AP009388.1 2 20101223 395019 Burkholderia multivorans ATCC 17616 plasmid pTGL1 CP000871.1 2 20131212 395019 Burkholderia multivorans ATCC 17616 plasmid pBMUL01 CP001045.1 4 20140515 391038 Burkholderia phymatum STM815 plasmid pBPHY01 CP001046.1 4 20140515 391038 Burkholderia phymatum STM815 plasmid pBPHY02 CP001054.1 6 20140515 398527 Burkholderia phytofirmans PsJN plasmid pBPHYT01 CP002016.1 6 20140515 640511 Burkholderia sp. CCGE1002 plasmid pBC201 AP013061.1 2 20130715 758793 Burkholderia sp. RPE64 plasmid p1 AP013062.1 3 20140527 758793 Burkholderia sp. RPE64 plasmid p2 AP014579.1 2 20140627 758796 Burkholderia sp. RPE67 plasmid p1 AP014580.1 2 20140627 758796 Burkholderia sp. RPE67 plasmid p2 AP014581.1 2 20140627 758796 Burkholderia sp. RPE67 plasmid p3 CP003090.1 4 20140515 1097668 Burkholderia sp. YI23 plasmid byi_1p CP003091.1 4 20140515 1097668 Burkholderia sp. YI23 plasmid byi_2p CP003092.1 4 20140515 1097668 Burkholderia sp. YI23 plasmid byi_3p CP000617.1 7 20140515 269482 Burkholderia vietnamiensis G4 plasmid pBVIE01 CP000618.1 7 20140515 269482 Burkholderia vietnamiensis G4 plasmid pBVIE02 CP000619.1 5 20140515 269482 Burkholderia vietnamiensis G4 plasmid pBVIE03 CP000620.1 5 20140515 269482 Burkholderia vietnamiensis G4 plasmid pBVIE04 CP000621.1 5 20140515 269482 Burkholderia vietnamiensis G4 plasmid pBVIE05 L31579.1 4 19990706 831 Butyrivibrio fibrisolvens plasmid pOM1 CP001813.1 5 20150118 515622 Butyrivibrio proteoclasticus B316 plasmid pCY186 CP001812.1 5 20150118 515622 Butyrivibrio proteoclasticus B316 plasmid pCY360 AY422720.1 3 20050416 28907 Caedibacter taeniospiralis plasmid pKAP298 CP001394.1 5 20140515 521460 Caldicellulosiruptor bescii DSM 6725 plasmid pATHE01 CP001395.1 5 20140515 521460 Caldicellulosiruptor bescii DSM 6725 plasmid pATHE02 AY948116.1 2 20060106 195 Campylobacter coli plasmid p3384 AY948117.1 2 20060106 195 Campylobacter coli plasmid p3386 AY394560.1 4 20050416 195 Campylobacter coli plasmid pCC31 DQ518170.1 3 20070919 306254 Campylobacter coli RM2228 plasmid pCC2228-1 DQ518171.1 3 20070919 306254 Campylobacter coli RM2228 plasmid pCC2228-2 DQ518172.1 3 20070919 306254 Campylobacter coli RM2228 plasmid pCC2228-3 CP000794.1 6 20140515 360104 Campylobacter concisus 13826 plasmid pCCON16 CP000793.1 6 20140515 360104 Campylobacter concisus 13826 plasmid pCCON31 EF050075.1 3 20070714 32020 Campylobacter fetus subsp. venerealis plasmid pCFV108 CP000775.1 4 20140515 360107 Campylobacter hominis ATCC BAA-381 plasmid pCH4 AF301164.1 5 20061114 197 Campylobacter jejuni plasmid pCJ01 AY256846.1 3 20050416 197 Campylobacter jejuni plasmid pCJ419 DQ518173.1 2 20070303 197 Campylobacter jejuni plasmid pCJ1170 AY394561.1 3 20050416 197 Campylobacter jejuni plasmid pTet AY714214.1 1 20050603 197 Campylobacter jejuni strain 81-176 plasmid pTet AF226280.2 5 20081224 354242 Campylobacter jejuni subsp. jejuni 81-176 virulence plasmid pVir CP000549.1 5 20140515 354242 Campylobacter jejuni subsp. jejuni 81-176 plasmid pTet, partial CP000550.1 5 20140515 354242 Campylobacter jejuni subsp. jejuni 81-176 plasmid pVir CP001877.1 5 20140515 567106 Campylobacter jejuni subsp. jejuni IA3902 plasmid pVir AB211496.1 3 20071001 201 Campylobacter lari plasmid pCL300 AB256957.1 2 20061114 201 Campylobacter lari plasmid pUPTC237 CP000933.1 4 20140515 306263 Campylobacter lari RM2100 megaplasmid pCL2100 CP001716.1 4 20140515 522306 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 plasmid pAph01 CP001717.1 4 20140515 522306 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 plasmid pAph02 CP001718.1 4 20140515 522306 Candidatus Accumulibacter phosphatis clade IIA str. UW-1 plasmid pAph03 AP010657.1 3 20090202 511995 Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 plasmid pCFPG1 AP010658.1 3 20090202 511995 Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 plasmid pCFPG2 AP010659.1 3 20090202 511995 Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 plasmid pCFPG3 AP010660.1 3 20090202 511995 Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 plasmid pCFPG4 CP001278.1 6 20140515 572265 Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) plasmid pHD5AT DQ119295.1 2 20061101 59748 Candidatus Phytoplasma australiense plasmid pCPa DQ318776.1 1 20060804 59748 Candidatus Phytoplasma australiense plasmid pPAPh2 DQ318777.1 1 20060804 59748 Candidatus Phytoplasma australiense plasmid pPASb11 GU322808.1 2 20100312 33989 Candidatus Rickettsia amblyommii strain AaR/SC plasmid pRAM18 GU322807.1 2 20100312 33989 Candidatus Rickettsia amblyommii strain AaR/SC plasmid pRAM23 CP001086.1 5 20140515 515618 Candidatus Riesia pediculicola USDA plasmid pPAN EU741249.1 1 20081005 28188 Capnocytophaga canimorsus plasmid pCC7 HE983996.1 4 20150227 1231626 Cardinium endosymbiont cEper1 of Encarsia pergandiella plasmid pCher CP000928.1 2 20140130 366602 Caulobacter sp. K31 plasmid pCAUL01 CP000929.1 4 20140501 366602 Caulobacter sp. K31 plasmid pCAUL02 CP000389.1 6 20140515 266779 Chelativorans sp. BNC1 plasmid 1 CP000391.1 6 20140515 266779 Chelativorans sp. BNC1 plasmid 2 CP000392.1 5 20140515 266779 Chelativorans sp. BNC1 plasmid 3 AE002162.1 11 20140203 243161 Chlamydia muridarum str. Nigg plasmid pMoPn CP001714.1 5 20140515 406984 Chlamydophila pneumoniae LPCoLN plasmid X62475.1 4 20061114 83554 Chlamydia psittaci plasmid pCpA1 X06707.3 27 20080729 813 Chlamydia trachomatis cryptic plasmid pLGV440 J03321.1 8 20120822 813 Chlamydia trachomatis Plasmid pCHL1 AM886278.1 2 20080918 813 Chlamydia trachomatis plasmid pL2 AM886279.1 2 20080918 813 Chlamydia trachomatis plasmid pUCH-1 FM865437.1 4 20150227 813 Chlamydia trachomatis plasmid pCTB, strain B/TZ1A828/OT, serovar B FM865438.1 4 20150227 813 Chlamydia trachomatis plasmid pJALI, strain Jali20, serovar B FM865439.1 4 20150227 813 Chlamydia trachomatis plasmid pSW2, strain Sweden2, serovar E FM865440.1 5 20150227 813 Chlamydia trachomatis plasmid pSW3, strain Sweden3, serovar E FM865441.1 5 20150227 813 Chlamydia trachomatis plasmid pSW4, strain Sweden4, serovar F FM865442.1 5 20150227 813 Chlamydia trachomatis plasmid pSW5, strain Sweden5, serovar F CP000052.1 5 20140515 315277 Chlamydia trachomatis A/HAR-13 plasmid pCTA CP002053.1 3 20131216 759363 Chlamydia trachomatis D-EC plasmid pCTDEC1 CP002055.1 3 20131216 759364 Chlamydia trachomatis D-LC plasmid pCTDLC1 HF562299.1 3 20150227 1260222 Chlamydia trachomatis IU824 plasmid pIU824 HF562301.1 3 20150227 1260223 Chlamydia trachomatis IU888 plasmid pIU888 AE015926.1 6 20140515 227941 Chlamydophila caviae GPIC plasmid pCpGP1 AP006862.1 5 20070519 264202 Chlamydophila felis Fe/C-56 plasmid pCfe1 U77780.1 3 20050418 1092 Chlorobium limicola strain DSM 249 endogenous plasmid pCL1 AF550415.2 4 20071101 546 Citrobacter freundii plasmid pCTX-M3 CP000824.1 7 20140515 290338 Citrobacter koseri ATCC BAA-895 plasmid pCKO2 CP000823.1 7 20140515 290338 Citrobacter koseri ATCC BAA-895 plasmid pCKO3 AF311902.1 2 20050415 67825 Citrobacter rodentium strain DBS100 plasmid pCRP3 FN543503.1 2 20150227 637910 Citrobacter rodentium ICC168 plasmid pCROD1 FN543504.1 2 20150227 637910 Citrobacter rodentium ICC168 plasmid pCROD2 FN543505.1 2 20150227 637910 Citrobacter rodentium ICC168 plasmid pCROD3 AM711865.1 4 20150227 443906 Clavibacter michiganensis subsp. michiganensis NCPPB 382, plasmid pCM1 AM711866.1 4 20150227 443906 Clavibacter michiganensis subsp. michiganensis NCPPB 382, plasmid pCM2 AM849035.1 5 20150206 31964 Clavibacter michiganensis subsp. sepedonicus plasmid pCS1 AM849036.1 6 20150206 31964 Clavibacter michiganensis subsp. sepedonicus plasmid pCSL1 AE001438.3 11 20140515 272562 Clostridium acetobutylicum ATCC 824 megaplasmid pSOL1 CP002119.1 6 20150108 863638 Clostridium acetobutylicum EA 2018 plasmid AP010934.1 1 20090513 1491 Clostridium botulinum plasmid pC2C203U28 AB910391.1 3 20141223 1491 Clostridium botulinum plasmid pMI06 DNA strain: Miyagi2006 AB910519.1 3 20141223 1491 Clostridium botulinum plasmid pMI06-01 DNA strain: Miyagi2006-01 AB910520.1 3 20141223 1491 Clostridium botulinum plasmid pTO08 DNA strain: Tochigi2008 CP000963.1 6 20140515 498214 Clostridium botulinum A3 str. Loch Maree plasmid pCLK AM412318.1 5 20150206 413999 Clostridium botulinum A str. ATCC 3502 plasmid pBOT3502 CP000940.1 6 20140515 498213 Clostridium botulinum B1 str. Okra plasmid pCLD FR745876.1 3 20150227 935198 Clostridium botulinum B str. Eklund 17B (NRP) CP001057.1 8 20140515 935198 Clostridium botulinum B str. Eklund 17B (NRP) CP001081.1 8 20140515 515621 Clostridium botulinum Ba4 str. 657 plasmid pCLJ CP001082.1 6 20140515 515621 Clostridium botulinum Ba4 str. 657 plasmid pCLJ2 CP001659.1 3 20091211 592027 Clostridium botulinum D str. 1873 plasmid pCLG1 CP001660.1 3 20091211 592027 Clostridium botulinum D str. 1873 plasmid pCLG2 CP002012.1 4 20140515 758678 Clostridium botulinum F str. 230613 plasmid pCBF CP000729.1 6 20140515 441772 Clostridium botulinum F str. Langeland plasmid pCLI AB365348.1 2 20121011 1492 Clostridium butyricum plasmid pCBM588 DNA, complete sequence, strain: MIYAIRI 588 HM590571.1 2 20101008 536227 Clostridium carboxidivorans P7 plasmid p19 CP000674.1 5 20140515 431943 Clostridium kluyveri DSM 555 plasmid pCKL555A AP009050.1 1 20090126 583346 Clostridium kluyveri NBRC 12016 plasmid pCKL1 AB236336.1 2 20060227 1502 Clostridium perfringens F4969 plasmid pCPF4969 AB236337.1 2 20060227 1502 Clostridium perfringens F5603 plasmid pCPF5603 AB189671.1 2 20050414 1502 Clostridium perfringens plasmid pBCNF5603 AB444205.1 1 20081026 1502 Clostridium perfringens plasmid pCP8533etx M32882.1 9 20121101 1502 Clostridium perfringens plasmid pIP404 DQ366035.1 2 20060623 1502 Clostridium perfringens strain CW92 plasmid pCW3 CP000313.1 9 20140515 289380 Clostridium perfringens SM101 plasmid pSM101A CP000314.1 9 20140515 289380 Clostridium perfringens SM101 plasmid pSM101B AP003515.1 10 20070519 195102 Clostridium perfringens str. 13 plasmid pCP13 U59416.1 3 20000304 48257 Clostridium sp. MCF-1 indigenous plasmid HG530136.1 2 20150307 1231072 Clostridium tetani 12124569, plasmid p12124569 AF528097.1 11 20150122 212717 Clostridium tetani E88 plasmid pE88 EU315244.1 4 20091027 158899 Collimonas fungivorans plasmid pTer331 AP014570.1 1 20140518 1458426 Comamonadaceae bacterium B1 plasmid pSMB1 AF076997.1 2 19991201 285 Comamonas testosteroni PtL5 cryptic plasmid pPT1 EF079106.1 3 20140131 543891 Comamonas testosteroni CNB-1, plasmid pCNB FM164414.1 4 20150304 169292 Corynebacterium aurimucosum plasmid pET44827 AJ308231.1 3 20051003 1721 Corynebacterium callunae cryptic plasmid pCC1 AB444587.1 1 20080704 160386 Corynebacterium casei plasmid pCASE1 AF492560.1 3 20050415 1717 Corynebacterium diphtheriae plasmid pNG2 AY061891.1 1 20011126 1717 Corynebacterium diphtheriae plasmid pNGA2 AP005225.1 4 20101223 196164 Corynebacterium efficiens YS-314 plasmid pCE2 AP005226.1 5 20101223 196164 Corynebacterium efficiens Ys-314 plasmid pCE3 AF479770.1 2 20021115 1718 Corynebacterium glutamicum 227 plasmid pXZ608 X03987.1 1 19890706 1718 Corynebacterium glutamicum ATCC 13869 native 4.45 kb plasmid AY172684.1 3 20050416 1718 Corynebacterium glutamicum plasmid pAG3 D00038.1 5 19990604 1718 Corynebacterium glutamicum plasmid pAM330 DNA AF092037.1 3 20031008 1718 Corynebacterium glutamicum plasmid pBl1 AY172685.1 3 20050416 1718 Corynebacterium glutamicum plasmid pCG2 AB525231.1 2 20100727 1718 Corynebacterium glutamicum plasmid pCGR2 AY172687.1 3 20050416 1718 Corynebacterium glutamicum plasmid pGA2 Z22927.1 9 19931203 1718 Corynebacterium glutamicum plasmid pSR1 AJ420072.1 7 20050415 1718 Corynebacterium glutamicum plasmid pTET3 X72691.1 18 19970120 1718 Corynebacterium glutamicum plasmid pXZ10142 U85507.1 5 20070110 1718 Corynebacterium glutamicum plasmid pXZ10145.1 AF121000.1 4 20050415 1718 Corynebacterium glutamicum strain 22243 R-plasmid pAG1 AF164956.1 5 20050415 1718 Corynebacterium glutamicum strain ATCC31830 R-plasmid pCG4 AP009045.1 2 20070519 340322 Corynebacterium glutamicum R plasmid pCGR1 AY266269.1 3 20061202 38289 Corynebacterium jeikeium plasmid pA501 AY263990.1 2 20050416 38289 Corynebacterium jeikeium plasmid pA505 AF486522.1 4 20050415 38289 Corynebacterium jeikeium plasmid pB85766 AY048596.1 6 20050416 38289 Corynebacterium jeikeium plasmid pCJ84 AF364477.1 3 20040903 38289 Corynebacterium jeikeium plasmid pK43 AY079086.1 4 20050416 38289 Corynebacterium jeikeium plasmid pK64 AF401314.1 8 20091027 306537 Corynebacterium jeikeium K411 plasmid pKW4 X99132.2 6 20060530 1724 Corynebacterium renale plasmid pCR1 EF488047.1 2 20101223 1724 Corynebacterium renale plasmid pCR2 FN825254.1 2 20120426 258224 Corynebacterium resistens plasmid pJA144188 DQ390458.1 1 20060706 373068 Corynebacterium sp. L2-79-05 plasmid pLEW279a DQ390457.1 1 20060706 373068 Corynebacterium sp. L2-79-05 plasmid pLEW279b AF024666.2 7 20100401 43770 Corynebacterium striatum R-plasmid pTP10 X75356.1 4 20050418 777 Coxiella burnetii plasmid QpH1 AF131076.1 3 20050415 777 Coxiella burnetii strain R1140 plasmid QpDV CP000914.1 2 20080112 360116 Coxiella burnetii 'MSU Goat Q177' plasmid QpRS CP001021.1 6 20140515 434924 Coxiella burnetii CbuK_Q154 plasmid pQpRS_K_Q154 CP000735.1 7 20140515 434922 Coxiella burnetii Dugway 5J108-111 plasmid pQpDG CP000889.1 4 20140515 360115 Coxiella burnetii RSA 331 plasmid QpH1 AE016829.1 12 20140515 227377 Coxiella burnetii RSA 493 plasmid pQpH1 CP000784.1 8 20140515 290339 Cronobacter sakazakii ATCC BAA-894 plasmid pESA2 CP000785.1 8 20140515 290339 Cronobacter sakazakii ATCC BAA-894 plasmid pESA3 X90708.2 9 20050418 266264 Cupriavidus metallidurans CH34 plasmid pMOL28 X71400.2 19 20050418 266264 Cupriavidus metallidurans CH34 plasmid pMOL30 CP000355.2 7 20140515 266264 Cupriavidus metallidurans CH34 plasmid pMOL28 CP000354.2 7 20140515 266264 Cupriavidus metallidurans CH34 plasmid pMOL30 CP002879.1 6 20140515 1042878 Cupriavidus necator N-1 plasmid pBB1 CP002880.1 5 20140515 1042878 Cupriavidus necator N-1 plasmid pBB2 AY305378.1 4 20130802 381666 Ralstonia eutropha H16 CP000092.1 8 20140515 264198 Ralstonia eutropha JMP134 megaplasmid CP000093.1 6 20140515 264198 Ralstonia eutropha JMP134 plasmid 1 AY365053.1 5 20051101 264198 Ralstonia eutropha JMP134 plasmid pJP4 DQ459356.1 2 20070424 164546 Cupriavidus taiwanensis plasmid pTJ86-1 DQ459357.1 2 20070424 164546 Cupriavidus taiwanensis plasmid pTJ86-2 CU633751.1 6 20150227 164546 Cupriavidus taiwanensis str. LMG19424 plasmid pRALTA CP000808.1 7 20140515 43989 Cyanothece sp. ATCC 51142 plasmid A CP000809.1 7 20140515 43989 Cyanothece sp. ATCC 51142 plasmid B CP000810.1 7 20140515 43989 Cyanothece sp. ATCC 51142 plasmid C CP000811.1 7 20140515 43989 Cyanothece sp. ATCC 51142 plasmid D CP001292.1 4 20140501 65393 Cyanothece sp. PCC 7424 plasmid pP742401 CP001293.1 4 20140501 65393 Cyanothece sp. PCC 7424 plasmid pP742402 CP001294.1 4 20140501 65393 Cyanothece sp. PCC 7424 plasmid pP742403 CP001295.1 4 20140501 65393 Cyanothece sp. PCC 7424 plasmid pP742404 CP001296.1 4 20140501 65393 Cyanothece sp. PCC 7424 plasmid pP742405 CP001297.1 4 20140501 65393 Cyanothece sp. PCC 7424 plasmid pP742406 CP001345.1 3 20140515 395961 Cyanothece sp. PCC 7425 plasmid pP742501 CP001346.1 3 20140515 395961 Cyanothece sp. PCC 7425 plasmid pP742502 CP001347.1 3 20140515 395961 Cyanothece sp. PCC 7425 plasmid pP742503 CP002199.1 3 20140516 497965 Cyanothece sp. PCC 7822 plasmid Cy782201 CP002200.1 3 20140516 497965 Cyanothece sp. PCC 7822 plasmid Cy782202 CP002201.1 3 20140516 497965 Cyanothece sp. PCC 7822 plasmid Cy782203 CP002202.1 3 20140516 497965 Cyanothece sp. PCC 7822 plasmid Cy782204 CP002203.1 3 20140516 497965 Cyanothece sp. PCC 7822 plasmid Cy782205 CP002204.1 3 20140516 497965 Cyanothece sp. PCC 7822 plasmid Cy782206 CP001288.1 4 20140501 41431 Cyanothece sp. PCC 8801 plasmid pP880101 CP001289.1 4 20140501 41431 Cyanothece sp. PCC 8801 plasmid pP880102 CP001290.1 4 20140501 41431 Cyanothece sp. PCC 8801 plasmid pP880103 CP001702.1 2 20131212 395962 Cyanothece sp. PCC 8802 plasmid pP880201 CP001703.1 2 20131212 395962 Cyanothece sp. PCC 8802 plasmid pP880202 CP001704.1 2 20131212 395962 Cyanothece sp. PCC 8802 plasmid pP880203 CP001705.1 2 20131212 395962 Cyanothece sp. PCC 8802 plasmid pP880204 EF221636.1 1 20070214 380087 Cylindrospermum sp. A1345 plasmid pCYLM01 EF452232.1 1 20070328 380087 Cylindrospermum sp. A1345 plasmid pCYLM02 AP011530.1 2 20131013 639282 Deferribacter desulfuricans SSM1 plasmid megaplasmid pDF308 CP001115.1 6 20140510 546414 Deinococcus deserti VCD115 plasmid 1 CP001116.1 6 20140510 546414 Deinococcus deserti VCD115 plasmid 2 CP001117.1 6 20140510 546414 Deinococcus deserti VCD115 plasmid 3 CP000358.2 9 20140515 319795 Deinococcus geothermalis DSM 11300 plasmid 1 CP000856.1 4 20140515 319795 Deinococcus geothermalis DSM 11300 plasmid pDGEO02 AE001826.1 11 20140515 243230 Deinococcus radiodurans R1 megaplasmid MP1 AE001827.1 10 20140515 243230 Deinococcus radiodurans R1 plasmid CP1 AB473550.1 2 20090626 57497 Deinococcus radiopugnans plasmid pUE30 AB063332.1 16 20101223 80866 Delftia acidovorans plasmid pUO1 CP001088.1 2 20140131 177437 Desulfobacterium autotrophicum HRM2 plasmid pHRM2a CP001735.1 6 20150109 485915 Desulfohalobium retbaense DSM 5692 plasmid pDRET01 CP003361.1 3 20150109 706587 Desulfomonile tiedjei DSM 6799 plasmid pDESTI.01 CR522871.1 6 20150227 177439 Desulfotalea psychrophila LSv54 large plasmid CR522872.1 6 20150227 177439 Desulfotalea psychrophila LSv54 small plasmid FO203523.1 3 20140925 1121451 Desulfovibrio hydrothermalis AM13 = DSM 14728 plasmid DESAM_p AP010905.1 2 20091010 573370 Desulfovibrio magneticus RS-1 plasmid pDMC1 AP010906.1 2 20091010 573370 Desulfovibrio magneticus RS-1 plasmid pDMC2 CP000528.1 6 20140515 391774 Desulfovibrio vulgaris DP4 plasmid pDVUL01 CP002298.1 3 20140516 573059 Desulfovibrio vulgaris RCH1 plasmid pDEVAL01 AE017286.1 9 20140515 882 Desulfovibrio vulgaris str. Hildenborough plasmid pDV Y19120.1 3 20050418 870 Dichelobacter nodosus plasmid DN1 AF000580.1 1 19980425 44689 Dictyostelium discoideum plasmid Ddp5 AF076279.1 6 20061114 79012 Dictyostelium firmibasis plasmid Dfp1 U94491.1 6 20061114 5787 Dictyostelium giganteum plasmid Dgp1 CP000831.1 5 20140515 398580 Dinoroseobacter shibae DFL 12 = DSM 16493 plasmid pDSHI01 CP000832.1 5 20140515 398580 Dinoroseobacter shibae DFL 12 = DSM 16493 plasmid pDSHI02 CP000833.1 5 20140515 398580 Dinoroseobacter shibae DFL 12 = DSM 16493 plasmid pDSHI03 CP000834.1 5 20140515 398580 Dinoroseobacter shibae DFL 12 = DSM 16493 plasmid pDSHI04 CP000835.1 5 20140515 398580 Dinoroseobacter shibae DFL 12 = DSM 16493 plasmid pDSHI05 AF244083.1 4 20050415 67780 Edwardsiella ictaluri plasmid pEI1 AF244084.1 1 20000718 67780 Edwardsiella ictaluri plasmid pEI2 CP001136.1 4 20140515 498217 Edwardsiella tarda EIB202 plasmid pEIB202 CP002155.1 5 20140515 718251 Edwardsiella tarda FL6-60 plasmid pFL6-60 AB193120.1 2 20070705 539 Eikenella corrodens plasmid pMU1 GQ353340.1 1 20090812 662024 Endophytic bacterium LOB-07 plasmid pLK39 U67194.4 10 20050717 548 Enterobacter aerogenes plasmid R751 EU266532.1 2 20090610 550 Enterobacter cloacae plasmid pCHE-A AB117929.1 1 20040221 550 Enterobacter cloacae plasmid pEC01 EU855787.1 1 20090413 550 Enterobacter cloacae plasmid pEC-IMP EU855788.1 1 20090413 550 Enterobacter cloacae plasmid pEC-IMPQ HE616889.1 2 20130627 550 Enterobacter cloacae plasmid pUL3AT containing class 3 integron In3-5, isolate LIM73 CP001919.1 5 20140515 716541 Enterobacter cloacae subsp. cloacae ATCC 13047 plasmid pECL_A CP001920.1 5 20140515 716541 Enterobacter cloacae subsp. cloacae ATCC 13047 plasmid pECL_B CP000654.1 7 20140515 399742 Enterobacter sp. 638 plasmid pENTE01 AF527822.1 6 20050415 211595 Enterobacter sp. RFL1396 plasmid pEsp1396 U09422.1 12 20061114 1351 Enterococcus faecalis DS16 transposon Tn916 AF503772.1 2 20050415 1351 Enterococcus faecalis plasmid pAMalpha1 AY855841.2 3 20050729 1351 Enterococcus faecalis plasmid pCF10 AF164559.3 5 20050415 1351 Enterococcus faecalis plasmid pEF1071 AB374546.1 3 20101223 1351 Enterococcus faecalis plasmid pMG2200 X92945.2 6 20050418 1351 Enterococcus faecalis plasmid pRE25 GQ484956.1 2 20100924 1351 Enterococcus faecalis plasmid pWZ1668 GU128949.1 1 20091118 1351 Enterococcus faecalis strain DS5 plasmid pAMbeta1 GU046453.1 1 20091123 1351 Enterococcus faecalis strain E99 plasmid pBEE99 CP002208.2 4 20130517 1351 Enterococcus faecalis strain EF-01 plasmid pEF-01 AE002565.1 5 20100310 1351 Enterococcus faecalis plasmid pAM373 AE016833.1 11 20140515 226185 Enterococcus faecalis V583 plasmid pTEF1 AE016831.1 11 20140515 226185 Enterococcus faecalis V583 plasmid pTEF2 AE016832.1 11 20140515 226185 Enterococcus faecalis V583 plasmid pTEF3 DQ832184.1 2 20061007 1352 Enterococcus faecium plasmid pCIZ2 DQ198088.1 1 20070311 1352 Enterococcus faecium plasmid pEF1 AB183714.1 2 20061114 1352 Enterococcus faecium plasmid pHT beta AM932524.1 2 20100907 1352 Enterococcus faecium plasmid pIP816 AY425961.1 2 20060216 1352 Enterococcus faecium plasmid pJB01 EU370687.1 1 20080124 1352 Enterococcus faecium plasmid pJS33 EU370688.1 1 20080124 1352 Enterococcus faecium plasmid pJS42 AB206333.1 1 20081016 1352 Enterococcus faecium plasmid pMG1 EU327398.1 2 20090123 1352 Enterococcus faecium plasmid pRI1 AF507977.1 2 20050415 1352 Enterococcus faecium plasmid pRUM AM296544.1 2 20070122 1352 Enterococcus faecium plasmid pVEF1 AM410096.1 1 20070122 1352 Enterococcus faecium plasmid pVEF2 AM931300.1 1 20080612 1352 Enterococcus faecium plasmid pVEF3 GQ900435.1 2 20091219 1352 Enterococcus faecium plasmid p5753cA AY123046.1 3 20100401 552 Erwinia amylovora plasmid pEA1.7 AY123047.1 3 20050416 552 Erwinia amylovora plasmid pEA2.8 AF264948.1 6 20061114 552 Erwinia amylovora plasmid pEA29 AY422214.1 2 20050416 552 Erwinia amylovora strain LebB66 plasmid pEL60 AY422215.1 2 20050416 552 Erwinia amylovora strain UTRJ2 plasmid pEU30 FN666576.1 2 20150227 716540 Erwinia amylovora ATCC 49946 plasmid 1 FN666577.1 3 20150227 716540 Erwinia amylovora ATCC 49946 plasmid 2 FN434114.1 3 20150227 665029 Erwinia amylovora CFBP1430 plasmid pEA29 FP236826.1 3 20150227 182337 Erwinia billingiae strain Eb661 complete plasmid pEB102 FP236830.1 3 20150227 182337 Erwinia billingiae strain Eb661 complete plasmid pEB170 AY123045.1 4 20061114 79967 Erwinia pyrifoliae strain Ep1/96 plasmid pEP36 FP928999.1 4 20150227 79967 Erwinia pyrifoliae strain Ep1/96 complete plasmid pEp2.6 FP236827.1 4 20150227 79967 Erwinia pyrifoliae strain Ep1/96 complete plasmid pEp03 FP236828.1 5 20150227 79967 Erwinia pyrifoliae strain Ep1/96 complete plasmid pEp05 FP236829.1 5 20150227 79967 Erwinia pyrifoliae strain Ep1/96 complete plasmid pEp36 FN392236.1 2 20150227 644651 Erwinia pyrifoliae DSM 12163 plasmid pEP2.6 FN392237.1 2 20150227 644651 Erwinia pyrifoliae DSM 12163 plasmid pEP3 FN392239.1 2 20150227 644651 Erwinia pyrifoliae DSM 12163 plasmid pEp5 FN392238.1 2 20150227 644651 Erwinia pyrifoliae DSM 12163 plasmid pEP36 CP002125.1 6 20140515 215689 Erwinia sp. Ejp617 plasmid pJE01 CP002126.1 6 20140515 215689 Erwinia sp. Ejp617 plasmid pJE02 CP002127.1 6 20140515 215689 Erwinia sp. Ejp617 plasmid pJE03 CP002128.1 6 20140515 215689 Erwinia sp. Ejp617 plasmid pJE04 CP002129.1 6 20140515 215689 Erwinia sp. Ejp617 plasmid pJE05 AY255829.1 2 20050416 231374 Erwinia sp. Ejp 556 plasmid pEJ30 CU468128.1 5 20150227 338565 Erwinia tasmaniensis strain ET1/99 complete plasmid pET09 CU468130.1 5 20150227 338565 Erwinia tasmaniensis strain ET1/99 complete plasmid pET35 CU468132.1 5 20150227 338565 Erwinia tasmaniensis strain ET1/99 complete plasmid pET45 CU468133.1 5 20150227 338565 Erwinia tasmaniensis strain ET1/99 complete plasmid pET46 CU468131.1 5 20150227 338565 Erwinia tasmaniensis strain ET1/99 complete plasmid pET49 AF028735.2 6 20061114 1648 Erysipelothrix rhusiopathiae plasmid pAP1 CU928159.2 1 20081216 562 Escherichia coli 5989 plasmid 55989p X04466.1 18 20081023 562 Escherichia coli bacteriocinogenic plasmid CloDF13 AY639886.1 2 20050603 562 Escherichia coli cryptic plasmid pRK2 CU928147.1 1 20081216 562 Escherichia coli ED1a plasmid pECOED AY167049.1 1 20021121 562 Escherichia coli invasion plasmid pIS2 AF401292.1 2 20081118 562 Escherichia coli O157:H- plasmid pSFO157 J01566.1 14 20121101 562 Escherichia coli plasmid ColE1 EF536825.1 1 20080113 562 Escherichia coli plasmid MccC7-H22 DQ364638.1 3 20061114 562 Escherichia coli plasmid NR1 AF550679.1 6 20070327 562 Escherichia coli plasmid p1658/97 AY360321.1 3 20050416 562 Escherichia coli plasmid p9123 AB040037.1 1 20000317 562 Escherichia coli plasmid p9705 AY545598.5 7 20061025 562 Escherichia coli plasmid pAPEC-O2-ColV AY214164.3 7 20051028 562 Escherichia coli plasmid pAPEC-O2-R AY458016.1 6 20061114 562 Escherichia coli plasmid pC15-1a K00826.1 6 20050417 562 Escherichia coli plasmid pCM959 AF197335.1 3 20050415 562 Escherichia coli plasmid pCol-let AY913943.1 2 20060318 562 Escherichia coli plasmid pColE1-H22 FJ985252.1 2 20100216 562 Escherichia coli plasmid pColE8 DQ286390.1 1 20070112 562 Escherichia coli plasmid pColG AY929248.1 3 20070202 562 Escherichia coli plasmid pColK-K235 CR942285.1 5 20081023 562 Escherichia coli plasmid pCoo AB702969.1 2 20140102 562 Escherichia coli plasmid pCss165Kan DNA, strain: 4266 delta cssB::Km FN868832.1 1 20100826 562 Escherichia coli plasmid pCT strain C159/11 GQ374157.1 2 20100213 562 Escherichia coli plasmid pEC14-9 GQ398086.1 2 20100101 562 Escherichia coli plasmid pEC14_114 AJ001708.1 2 20050415 562 Escherichia coli plasmid pECO29 DNA GU371926.1 1 20100811 562 Escherichia coli plasmid pEC_B24 GU371927.1 1 20100811 562 Escherichia coli plasmid pEC_Bactec GU371928.1 1 20100811 562 Escherichia coli plasmid pEC_L8 GU371929.1 1 20100811 562 Escherichia coli plasmid pEC_L46 AY608912.1 3 20061114 562 Escherichia coli plasmid pFL129 AY424310.1 1 20031030 562 Escherichia coli plasmid pIGAL1 EU090225.1 1 20070910 562 Escherichia coli plasmid pIGJC156 DQ916145.1 1 20061002 562 Escherichia coli plasmid pIGMS5 EF088686.1 1 20061204 562 Escherichia coli plasmid pIGRW12 DQ311641.1 2 20061031 562 Escherichia coli plasmid pIGWZ12 AM886293.1 2 20080403 562 Escherichia coli plasmid pIP1206 A24782.1 1 19950224 562 Escherichia coli plasmid pJD884 U81610.2 8 20061114 562 Escherichia coli plasmid pKL1 X55795.1 1 19930406 562 Escherichia coli plasmid pLAB135 X55796.1 1 19930406 562 Escherichia coli plasmid pLAB446 AF251289.1 1 20001004 562 Escherichia coli plasmid pLG13 U10186.1 8 20081018 562 Escherichia coli plasmid pLMO226 DQ388534.1 2 20070711 562 Escherichia coli plasmid pMAR7 DQ995351.1 1 20061011 562 Escherichia coli plasmid pMG828-1 DQ995352.1 1 20061011 562 Escherichia coli plasmid pMG828-2 DQ995353.1 1 20061011 562 Escherichia coli plasmid pMG828-3 DQ995354.1 1 20061011 562 Escherichia coli plasmid pMG828-4 DQ995355.1 1 20061011 562 Escherichia coli plasmid pMG828-5 AY522431.4 8 20061114 562 Escherichia coli plasmid pMUR050 AB255435.1 5 20101223 562 Escherichia coli plasmid pO86A1 AY258503.2 5 20050905 562 Escherichia coli plasmid pO113 EU370913.1 2 20080627 562 Escherichia coli plasmid pOLA52 FJ705806.1 2 20090717 562 Escherichia coli plasmid pRAx EU675685.1 2 20081019 562 Escherichia coli plasmid pSP70 EF090911.1 1 20061126 562 Escherichia coli plasmid pVI678 EU330199.1 2 20090315 562 Escherichia coli plasmid pVM01 BR000038.1 2 20060509 562 Escherichia coli plasmid R388 AP002527.1 9 20101223 562 Escherichia coli plasmid R721 genomic DNA M28829.1 6 20121101 562 Escherichia coli plasmid RSF1010 CU928146.1 2 20090523 562 Escherichia coli S88 plasmid pECOS88 FQ482074.1 1 20101015 562 Escherichia coli str. O102-ST405 plasmid pETN48 FJ696404.1 2 20100723 562 Escherichia coli strain 7 plasmid IncQ-type pQ7 AY589571.1 3 20091027 562 Escherichia coli strain 278B plasmid pEC278 DQ390454.1 1 20060706 562 Escherichia coli strain 517-2H1 plasmid pLEW517 DQ390455.1 2 20061114 562 Escherichia coli strain 690FNR plasmid pLEW517 EU935739.1 1 20090819 562 Escherichia coli strain A plasmid pEK499 FJ621588.1 2 20100213 562 Escherichia coli strain AR060302 plasmid pAR060302 EU935740.1 1 20090819 562 Escherichia coli strain C plasmid pEK204 EU935738.1 1 20090819 562 Escherichia coli strain D plasmid pEK516 EU580135.1 2 20091229 562 Escherichia coli strain E2348/69 plasmid p5217 EU580136.1 2 20091229 562 Escherichia coli strain E2348/69 plasmid p6148 M37402.1 9 20130201 562 Escherichia coli strain GM31 plasmid ColA FJ621586.1 2 20100213 562 Escherichia coli strain H4H plasmid peH4H FJ449539.1 3 20110330 562 Escherichia coli strain H30 plasmid pO26-L EU999782.1 1 20080917 562 Escherichia coli strain H30 plasmid pO26-S1 FJ386569.1 1 20090331 562 Escherichia coli strain H30 plasmid pO26-Vir FJ004637.1 1 20080911 562 Escherichia coli strain H30 serovar O26:H11 plasmid pO26-S3 FJ004638.1 1 20080911 562 Escherichia coli strain H30 serovar O26:H11 plasmid pO26-S4 FJ573246.1 1 20090127 562 Escherichia coli strain J plasmid ColE9-J FJ666132.1 1 20091106 562 Escherichia coli strain MS2027 plasmid pMAS2027 HM138652.1 1 20100527 562 Escherichia coli strain ST131 plasmid pKC394 GU214746.1 1 20091223 562 Escherichia coli strain ZMF18 plasmid pPM18 CU928148.1 1 20081216 562 Escherichia coli UMN026 plasmid p1ESCUM CU928149.1 1 20081216 562 Escherichia coli UMN026 plasmid p2ESCUM HE603110.1 2 20120109 562 Escherichia coli HUSEC41 plasmid pHUSEC41-1 HE603111.1 3 20120109 562 Escherichia coli HUSEC41 plasmid pHUSEC41-2 HE603112.1 3 20120109 562 Escherichia coli HUSEC41 plasmid pHUSEC41-3 HE603113.1 2 20120109 562 Escherichia coli HUSEC41 plasmid pHUSEC41-4 FN554767.1 4 20150227 216592 Escherichia coli 042 plasmid p042 CP001065.1 1 20080517 344610 Escherichia coli 53638 plasmid p53638_75 CP001064.1 1 20080517 344610 Escherichia coli 53638 plasmid p53638_226 CP001833.1 5 20140515 655817 Escherichia coli ABU 83972 plasmid pABU DQ381420.1 5 20140203 405955 Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM DQ517526.1 5 20140203 405955 Escherichia coli APEC O1 plasmid pAPEC-O1-R AB024946.1 10 20130725 344601 Escherichia coli B171 CP000836.1 2 20120427 475609 Escherichia coli chi7122 plasmid pAPEC-1 FN822747.1 2 20101021 762608 Escherichia coli ETEC 1392/75 plasmid p62 FN822749.1 2 20101021 762608 Escherichia coli ETEC 1392/75 plasmid p75 FN822746.1 2 20101021 762608 Escherichia coli ETEC 1392/75 plasmid p557 FN822748.1 2 20101021 762608 Escherichia coli ETEC 1392/75 plasmid p746 FN822745.1 2 20101021 762608 Escherichia coli ETEC 1392/75 plasmid p1018 AP010910.1 1 20091114 316401 Escherichia coli ETEC H10407 plasmid pEntH10407 FN649415.1 2 20150227 316401 Escherichia coli ETEC H10407 plasmid p52 FN649416.1 2 20150227 316401 Escherichia coli ETEC H10407 plasmid p58 FN649417.1 2 20150227 316401 Escherichia coli ETEC H10407 plasmid p666 FN649418.1 2 20150227 316401 Escherichia coli ETEC H10407 plasmid p948 AP001918.1 15 20130214 83333 Escherichia coli K-12 CP002517.1 3 20140516 595495 Escherichia coli KO11FL plasmid pEKO1101 CP002518.1 3 20140516 595495 Escherichia coli KO11FL plasmid pEKO1102 AP010954.1 3 20101223 573235 Escherichia coli O26:H11 str. 11368 plasmid pO26_1 AP010955.1 3 20101223 573235 Escherichia coli O26:H11 str. 11368 plasmid pO26_2 AP010956.1 2 20091026 573235 Escherichia coli O26:H11 str. 11368 plasmid pO26_3 AP010957.1 2 20091026 573235 Escherichia coli O26:H11 str. 11368 plasmid pO26_4 GQ259888.1 2 20100125 376724 Escherichia coli O26:H- strain O6877 plasmid pO26-CRL CP001847.1 5 20150211 701177 Escherichia coli O55:H7 str. CB9615 plasmid pO55 AP010959.1 3 20101223 585395 Escherichia coli O103:H2 str. 12009 plasmid pO103 AP010961.1 3 20101223 585396 Escherichia coli O111:H- str. 11128 plasmid pO111_1 AP010962.1 3 20101223 585396 Escherichia coli O111:H- str. 11128 plasmid pO111_2 AP010963.1 3 20101223 585396 Escherichia coli O111:H- str. 11128 plasmid pO111_3 AP010964.1 2 20091026 585396 Escherichia coli O111:H- str. 11128 plasmid pO111_4 AP010965.1 2 20091026 585396 Escherichia coli O111:H- str. 11128 plasmid pO111_5 FM180570.1 4 20150206 574521 Escherichia coli O127:H6 str. E2348/69 plasmid pE2348-2 FM180569.1 4 20150206 574521 Escherichia coli O127:H6 str. E2348/69 plasmid pMAR2 CP000801.1 5 20140515 331111 Escherichia coli O139:H28 str. E24377A plasmid pETEC_5 CP000798.1 5 20140515 331111 Escherichia coli O139:H28 str. E24377A plasmid pETEC_6 CP000796.1 5 20140515 331111 Escherichia coli O139:H28 str. E24377A plasmid pETEC_35 CP000797.1 5 20140515 331111 Escherichia coli O139:H28 str. E24377A plasmid pETEC_73 CP000799.1 5 20140515 331111 Escherichia coli O139:H28 str. E24377A plasmid pETEC_74 CP000795.1 5 20140515 331111 Escherichia coli O139:H28 str. E24377A plasmid pETEC_80 CP001165.1 6 20140515 444450 Escherichia coli O157:H7 str. EC4115 plasmid pEC4115 CP001163.1 6 20140515 444450 Escherichia coli O157:H7 str. EC4115 plasmid pO157 AF074613.1 15 20140807 155864 Escherichia coli O157:H7 str. EDL933, plasmid p0157 AB011549.2 10 20070519 386585 Escherichia coli O157:H7 str. Sakai plasmid pO157 AB011548.2 6 20070519 386585 Escherichia coli O157:H7 str. Sakai plasmid pOSAK1 CP001369.1 4 20140516 544404 Escherichia coli O157:H7 str. TW14359 plasmid pO157 HG428756.1 1 20130918 1382700 Escherichia coli PMV-1 plasmid pHUSEC411like AP009241.1 3 20081229 409438 Escherichia coli SE11 plasmid pSE11-1 AP009242.1 3 20081229 409438 Escherichia coli SE11 plasmid pSE11-2 AP009243.1 3 20081229 409438 Escherichia coli SE11 plasmid pSE11-3 AP009244.1 3 20081229 409438 Escherichia coli SE11 plasmid pSE11-4 AP009245.1 3 20081229 409438 Escherichia coli SE11 plasmid pSE11-5 AP009246.1 3 20081229 409438 Escherichia coli SE11 plasmid pSE11-6 AP009379.1 2 20100205 431946 Escherichia coli SE15 plasmid pECSF1 CP000974.1 6 20140515 439855 Escherichia coli SMS-3-5 plasmid pSMS35_3 CP000973.1 6 20140515 439855 Escherichia coli SMS-3-5 plasmid pSMS35_4 CP000972.1 6 20140515 439855 Escherichia coli SMS-3-5 plasmid pSMS35_8 CP000971.1 6 20140515 439855 Escherichia coli SMS-3-5 plasmid pSMS35_130 HG941719.1 6 20150403 1359206 Escherichia coli ST131 str. EC958 plasmid pEC958 HG941720.1 5 20150403 1359206 Escherichia coli ST131 str. EC958 plasmid pEC958B CP002168.1 2 20131216 869729 Escherichia coli UM146 plasmid pUM146 CP000244.1 4 20131212 364106 Escherichia coli UTI89 plasmid pUTI89 CP001162.1 2 20100630 563770 Escherichia coli Vir68 plasmid pVir68 CU928144.1 4 20150227 585054 Escherichia fergusonii ATCC 35469T plasmid pEFER AM743197.2 2 20070726 299586 Escherichia sp. Sflu5 cryptic plasmid pAK51 AM980831.1 3 20081218 518693 Exiguobacterium arabatum plasmid pEspA AM980832.1 6 20081218 518693 Exiguobacterium arabatum plasmid pEspB CP001023.1 2 20131212 262543 Exiguobacterium sibiricum 255-15 plasmid pEXIG01 CP001024.1 2 20131212 262543 Exiguobacterium sibiricum 255-15 plasmid pEXIG02 AP008972.1 2 20080301 334413 Finegoldia magna ATCC 29328 plasmid pFMC FQ859182.1 3 20150227 55197 Flavobacterium branchiophilum FL-15, plasmid AY277637.1 3 20050416 96345 Flavobacterium psychrophilum strain D12 plasmid pCP1 D26094.1 17 20101223 408956 Flavobacterium sp. KI723T1 plasmid pOAD2 AB007196.1 2 20101208 932218 Flavobacterium sp. KP1, plasmid pFL1 AB297474.1 4 20091114 463 Fluoribacter dumoffii plasmid pLD-TEX-KL EU850812.1 2 20091006 28110 Francisella philomiragia plasmid pF242 EU850813.1 2 20091006 484022 Francisella philomiragia subsp. philomiragia ATCC 25017 plasmid pF243 CP000938.1 2 20140130 484022 Francisella philomiragia subsp. philomiragia ATCC 25017 plasmid pFPHI01 AF055345.1 4 20061114 263 Francisella tularensis plasmid pOM1 AF121418.1 5 20020309 264 Francisella tularensis subsp. novicida plasmid pFNL10 AY027524.1 3 20050416 1856 Frankia sp. CpI1 plasmid pFQ12 AF159249.1 4 20061114 851 Fusobacterium nucleatum plasmid pFN1 AF295336.1 4 20050415 851 Fusobacterium nucleatum plasmid pKH9 AF022647.1 6 20061114 851 Fusobacterium nucleatum plasmid pPA52 CP000710.1 2 20070723 393480 Fusobacterium nucleatum subsp. polymorphum ATCC 10953 plasmid pFN3 AP014816.1 1 20150402 1615909 Geminocystis sp. NIES-3708 plasmid pGM01 AP014817.1 1 20150402 1615909 Geminocystis sp. NIES-3708 plasmid pGM02 AP014818.1 1 20150402 1615909 Geminocystis sp. NIES-3708 plasmid pGM03 AP014819.1 1 20150402 1615909 Geminocystis sp. NIES-3708 plasmid pGM04 AP014820.1 1 20150402 1615909 Geminocystis sp. NIES-3708 plasmid pGM05 AP014822.1 1 20150402 1617448 Geminocystis sp. NIES-3709 plasmid pGM3709_01 AP014823.1 1 20150402 1617448 Geminocystis sp. NIES-3709 plasmid pGM3709_02 AP014824.1 1 20150402 1617448 Geminocystis sp. NIES-3709 plasmid pGM3709_03 AP014825.1 1 20150402 1617448 Geminocystis sp. NIES-3709 plasmid pGM3709_04 AP014826.1 1 20150402 1617448 Geminocystis sp. NIES-3709 plasmid pGM3709_05 AP014827.1 1 20150402 1617448 Geminocystis sp. NIES-3709 plasmid pGM3709_06 AP014828.1 1 20150402 1617448 Geminocystis sp. NIES-3709 plasmid pGM3709_07 AP014829.1 1 20150402 1617448 Geminocystis sp. NIES-3709 plasmid pGM3709_08 AP014830.1 1 20150402 1617448 Geminocystis sp. NIES-3709 plasmid pGM3709_09 AP014831.1 1 20150402 1617448 Geminocystis sp. NIES-3709 plasmid pGM3709_10 AP014832.1 1 20150402 1617448 Geminocystis sp. NIES-3709 plasmid pGM3709_11 AP006520.1 4 20150111 235909 Geobacillus kaustophilus HTA426 plasmid pHTA426 CP001639.1 2 20131212 471223 Geobacillus sp. WCH70 plasmid pWCH7001 CP001640.1 2 20131212 471223 Geobacillus sp. WCH70 plasmid pWCH7002 AM886060.1 4 20081023 1422 Geobacillus stearothermophilus plasmid pGS18 D29989.1 13 20071029 1422 Geobacillus stearothermophilus plasmid pSTK1 CP000558.1 6 20140515 420246 Geobacillus thermodenitrificans NG80-2 plasmid pLW1071 CP002836.1 2 20130718 634956 Geobacillus thermoglucosidasius C56-YS93 plasmid pGEOTH01 CP002837.1 2 20130718 634956 Geobacillus thermoglucosidasius C56-YS93 plasmid pGEOTH02 CP001090.1 2 20131212 398767 Geobacter lovleyi SZ plasmid pGLOV01 CP000149.1 6 20140515 269799 Geobacter metallireducens GS-15 plasmid AM889287.1 5 20150227 272568 Gluconacetobacter diazotrophicus PA1 5 plasmid pGDIPal5I AM889286.1 4 20150227 272568 Gluconacetobacter diazotrophicus PA1 5 plasmid pGDIPal5II CP001190.1 5 20140515 272568 Gluconacetobacter diazotrophicus PA1 5 pGDIA01 AJ428837.1 2 20050415 442 Gluconobacter oxydans DSM 3504 plasmid pGO128 AB086443.1 2 20040728 442 Gluconobacter oxydans plasmid pAG5 CP000004.1 7 20140515 290633 Gluconobacter oxydans 621H plasmid pGOX1 CP000005.1 7 20140515 290633 Gluconobacter oxydans 621H plasmid pGOX2 CP000006.1 7 20140515 290633 Gluconobacter oxydans 621H plasmid pGOX3 CP000007.1 7 20140515 290633 Gluconobacter oxydans 621H plasmid pGOX4 CP000008.1 6 20140515 290633 Gluconobacter oxydans 621H plasmid pGOX5 CP001803.1 4 20150109 526226 Gordonia bronchialis DSM 43247 plasmid pGBRO01 CP002112.1 7 20140515 337191 Gordonia sp. KTR9 plasmid pGKT2 AJ576039.1 2 20050415 158898 Gordonia westfalica strain DSM44215T plasmid pKB1 AF034721.1 2 20000303 2775 Gracilaria chilensis plasmid Gch3937 AF034719.1 3 20050415 2775 Gracilaria chilensis plasmid Gch7220 AF034717.1 2 20000303 38400 Gracilaria robusta plasmid Gro4059 AF034718.1 2 20000303 38400 Gracilaria robusta plasmid Gro4970 AF034720.1 2 20000303 2782 Gracilariopsis lemaneiformis plasmid Gle4293 AY434675.1 2 20040128 730 Haemophilus ducreyi strain ATCC 27722 plasmid pNAD1 AJ627386.1 8 20081023 727 Haemophilus influenzae plasmid ICEhin1056 AY647243.1 1 20050701 725 Haemophilus influenzae biotype aegyptius plasmid pF1947 AF469177.1 3 20050415 725 Haemophilus influenzae biotype aegyptius plasmid pF3028 AF447808.1 2 20050415 725 Haemophilus influenzae biotype aegyptius plasmid pF3031 AY862436.1 3 20050428 738 Haemophilus parasuis plasmid pHS-Rec AY862435.1 3 20050428 738 Haemophilus parasuis plasmid pHS-Tet FJ947048.1 2 20101007 738 Haemophilus parasuis strain HN7061 plasmid pHN61 AY271828.1 1 20040304 569 Hafnia alvei plasmid pAlvA AY271829.1 1 20040304 569 Hafnia alvei plasmid pAlvB CP002063.1 6 20140515 795797 Halalkalicoccus jeotgali B3 plasmid 1 CP002064.1 6 20140515 795797 Halalkalicoccus jeotgali B3 plasmid 2 CP002065.1 6 20140515 795797 Halalkalicoccus jeotgali B3 plasmid 3 CP002066.1 6 20140515 795797 Halalkalicoccus jeotgali B3 plasmid 4 CP002067.1 6 20140515 795797 Halalkalicoccus jeotgali B3 plasmid 5 CP002068.1 6 20140515 795797 Halalkalicoccus jeotgali B3 plasmid 6 AY596290.1 8 20140515 272569 Haloarcula marismortui ATCC 43049 plasmid pNG100 AY596291.1 9 20140515 272569 Haloarcula marismortui ATCC 43049 plasmid pNG200 AY596292.1 8 20140515 272569 Haloarcula marismortui ATCC 43049 plasmid pNG300 AY596293.1 8 20140515 272569 Haloarcula marismortui ATCC 43049 plasmid pNG400 AY596294.1 8 20140515 272569 Haloarcula marismortui ATCC 43049 plasmid pNG500 AY596295.1 8 20140515 272569 Haloarcula marismortui ATCC 43049 plasmid pNG600 AY596296.1 8 20140515 272569 Haloarcula marismortui ATCC 43049 plasmid pNG700 AY443099.2 4 20061117 262078 Haloarcula sp. AS7094 plasmid pSCM201 X65098.1 12 19940805 2242 Halobacterium salinarum immunity conferring plasmid pPHIHL X07128.1 10 20010310 2242 Halobacterium salinarum plasmid pHSB AM774419.1 12 20150304 478009 Halobacterium salinarum R1 PHS4 AM774416.1 12 20150304 478009 Halobacterium salinarum R1 plasmid PHS1 AM774417.1 12 20150304 478009 Halobacterium salinarum R1 plasmid PHS2 AM774418.1 13 20150304 478009 Halobacterium salinarum R1 plasmid PHS3 AF016485.1 12 20140430 64091 Halobacterium sp. NRC-1 plasmid pNRC100 AE004438.1 6 20140515 64091 Halobacterium sp. NRC-1 plasmid pNRC200 X16460.1 4 20071015 88773 Halobacterium sp. GN101 plasmid pHGN1 J03014.1 5 20121101 309800 Haloferax volcanii DS2 plasmid pHV2 CP001957.1 5 20140515 309800 Haloferax volcanii DS2 plasmid pHV1 CP001954.1 5 20140515 309800 Haloferax volcanii DS2 plasmid pHV2 CP001953.1 5 20140515 309800 Haloferax volcanii DS2 plasmid pHV3 CP001955.1 6 20140515 309800 Haloferax volcanii DS2 plasmid pHV4 CP001689.1 2 20131212 485914 Halomicrobium mukohataei DSM 12286 plasmid pHmuk01 CP002988.1 2 20130718 756883 Halophilic archaeon DL31 CP002989.1 2 20130718 756883 Halophilic archaeon DL31 plasmid phalar01 CP002990.1 2 20130718 756883 Halophilic archaeon DL31 plasmid phalar02 CP002840.1 2 20130718 797210 Halopiger xanaduensis SH-6 plasmid pHALXA01 CP002841.1 2 20130718 797210 Halopiger xanaduensis SH-6 plasmid pHALXA02 CP002842.1 2 20130718 797210 Halopiger xanaduensis SH-6 plasmid pHALXA03 FR746101.1 5 20150227 768065 Haloquadratum walsbyi C23 plasmid PL6A FR746102.1 5 20150227 768065 Haloquadratum walsbyi C23 plasmid PL6B FR746100.1 10 20150305 768065 Haloquadratum walsbyi C23 plasmid PL100 AM180089.1 9 20150304 362976 Haloquadratum walsbyi DSM 16790 plasmid PL47 HF571521.1 2 20140401 1033806 Halorhabdus tiamatea SARL4B plasmid pHTIA CP001367.1 4 20140515 416348 Halorubrum lacusprofundi ATCC 49239 plasmid pHLAC01 AF389188.1 2 20070420 2248 Halorubrum saccharovorum plasmid pZMX101 DQ400913.1 1 20070302 121872 Haloterrigena thermotolerans strain H13 plasmid pSN CP001861.1 5 20140515 543526 Haloterrigena turkmenica DSM 5511 plasmid pHTUR01 CP001862.1 5 20140515 543526 Haloterrigena turkmenica DSM 5511 plasmid pHTUR02 CP001863.1 5 20140515 543526 Haloterrigena turkmenica DSM 5511 plasmid pHTUR03 CP001864.1 5 20140515 543526 Haloterrigena turkmenica DSM 5511 plasmid pHTUR04 CP001865.1 5 20140515 543526 Haloterrigena turkmenica DSM 5511 plasmid pHTUR05 CP001866.1 5 20140515 543526 Haloterrigena turkmenica DSM 5511 plasmid pHTUR06 AM260523.1 4 20150227 382638 Helicobacter acinonychis str. Sheeba plasmid pHac1 FR871758.1 3 20150227 1002804 Helicobacter bizzozeronii CIII-1 plasmid pHbz1 AY584531.1 2 20050416 210 Helicobacter pylori plasmid pAL202 DQ239897.1 3 20061114 210 Helicobacter pylori plasmid pAL226 AF469112.1 4 20050415 210 Helicobacter pylori plasmid pHel4 AF469113.1 3 20050415 210 Helicobacter pylori plasmid pHel5 AY267368.1 3 20050416 210 Helicobacter pylori plasmid pHP51 DQ915941.1 2 20130313 210 Helicobacter pylori plasmid pHP69 AF027303.1 4 20050614 210 Helicobacter pylori plasmid pHP489 DQ198799.1 2 20071128 210 Helicobacter pylori plasmid pHP666 AF275307.1 4 20110311 210 Helicobacter pylori plasmid pHPM8 U12689.1 7 20061114 210 Helicobacter pylori plasmid pHPM180 AF077006.1 5 20070112 210 Helicobacter pylori plasmid pHPM186 AF056496.1 2 20050415 210 Helicobacter pylori plasmid pHPO100 HM125988.1 1 20100519 210 Helicobacter pylori strain AL236 plasmid pAL236-2 HM125989.1 1 20100519 210 Helicobacter pylori strain AL236 plasmid pAL236-5 HM125987.1 1 20100519 210 Helicobacter pylori strain AL236 plasmid pAL236-11 AP014713.1 1 20150314 210 Helicobacter pylori plasmid ML3-PL DNA strain: ML3 FN665651.1 3 20150227 693745 Helicobacter pylori B8 AP011942.1 3 20110601 866345 Helicobacter pylori F30 plasmid pHPF30 AP011944.1 3 20110601 102608 Helicobacter pylori F32 plasmid pHPF32 CP001174.1 3 20140204 563041 Helicobacter pylori G27 plasmid pHPG27 CP000242.1 6 20140515 357544 Helicobacter pylori HPAG1 plasmid pHPAG1 AP012602.1 2 20141005 1248726 Helicobacter pylori OK310 plasmid pHPOK310 CP001218.1 6 20140515 570508 Helicobacter pylori P12 plasmid HPP12 CP002075.1 4 20140515 765963 Helicobacter pylori PeCan4 plasmid pHPPC4 CP002072.1 4 20140515 794851 Helicobacter pylori Sat464 plasmid pHPSAT464 CP001583.1 2 20131212 637913 Helicobacter pylori v225d plasmid pHPv225d CP000877.1 5 20131212 316274 Herpetosiphon aurantiacus DSM 785 plasmid pHAU02 CP000876.1 5 20131212 316274 Herpetosiphon aurantiacus DSM 785plasmid pHAU01 CP001679.1 5 20140515 582402 Hirschia baltica ATCC 49814 plasmid pHbal01 CP000019.1 6 20140515 205914 Haemophilus somnus 129PT plasmid pHS129 AF546882.1 2 20050415 731 Histophilus somni plasmid p9L AF318175.1 2 20031008 731 Histophilus somni small plasmid, isolate 57/98 CP002282.1 3 20111010 572544 Ilyobacter polytropus DSM 2926 plasmid pILYOP01 CP002283.1 3 20111010 572544 Ilyobacter polytropus DSM 2926 plasmid pILYOP02 CP000265.1 8 20140515 290400 Jannaschia sp. CCS1 plasmid1 CP002225.1 4 20140515 880591 Ketogulonicigenium vulgare Y25 plasmid pYP1 CP002226.1 4 20140515 880591 Ketogulonicigenium vulgare Y25 plasmid pYP12 CP000751.1 4 20140515 266940 Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD01 CP000752.1 4 20140515 266940 Kineococcus radiotolerans SRS30216 = ATCC BAA-149 plasmid pKRAD02 HM126016.1 5 20101007 795470 Klebsiella oxytoca KOX105 plasmid pKOX105 EU383016.1 1 20080408 573 Klebsiella pneumoniae FC1 multiresistance plasmid pMET-1 EU331426.1 2 20090329 573 Klebsiella pneumoniae plasmid pH205 AY543072.1 1 20040311 573 Klebsiella pneumoniae plasmid pIGMS31 DQ298019.1 1 20051219 573 Klebsiella pneumoniae plasmid pIGMS32 AY543071.1 1 20040311 573 Klebsiella pneumoniae plasmid pIGRK AY033516.1 5 20110501 573 Klebsiella pneumoniae plasmid pIP843 AF479774.1 3 20050415 573 Klebsiella pneumoniae plasmid pJHCMW1 FJ494913.1 2 20100128 573 Klebsiella pneumoniae plasmid pKF3-70 AF156893.2 5 20050415 573 Klebsiella pneumoniae plasmid pKlebB-k17/80 AF300473.1 2 20050415 573 Klebsiella pneumoniae plasmid pKPN2 GU595196.1 2 20100924 573 Klebsiella pneumoniae plasmid pKpQIL AY378100.1 5 20061114 573 Klebsiella pneumoniae plasmid pLVPK FJ223607.1 2 20090504 573 Klebsiella pneumoniae strain 9 plasmid 9 FJ223605.1 2 20090504 573 Klebsiella pneumoniae strain 12 plasmid 12 FJ223606.1 2 20090504 573 Klebsiella pneumoniae strain 15 plasmid 15S EU938349.1 2 20091123 573 Klebsiella pneumoniae strain 0773 plasmid pCTXM360 EU932690.1 1 20081216 573 Klebsiella pneumoniae strain 0773 plasmid pKpn114 FJ042668.1 2 20101214 573 Klebsiella pneumoniae strain C132-98 plasmid FJ876826.1 2 20100421 573 Klebsiella pneumoniae strain KF3 plasmid pKF3-94 FJ876827.1 2 20100421 573 Klebsiella pneumoniae strain KF3 plasmid pKF3-140 FJ628167.2 3 20100826 573 Klebsiella pneumoniae strain KP048 plasmid pKP048 EU195449.1 2 20081216 573 Klebsiella pneumoniae strain KP96 plasmid pKP96 EF382672.1 1 20070801 573 Klebsiella pneumoniae strain NK29 plasmid pK29 DQ449578.1 5 20081126 573 Klebsiella pneumoniae strain NK245 plasmid pK245 GU585907.1 3 20100924 573 Klebsiella pneumoniae strain NL194 plasmid pNL194 FO834904.1 3 20150307 573 Klebsiella pneumoniae str. Kp52.145, plasmid I FO834905.1 3 20150307 573 Klebsiella pneumoniae str. Kp52.145, plasmid II CP000966.1 2 20140202 507522 Klebsiella pneumoniae 342 plasmid pKP91 CP000965.1 2 20140202 507522 Klebsiella pneumoniae 342 plasmid pKP187 CP000648.1 6 20140515 272620 Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN3 CP000649.1 6 20140515 272620 Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN4 CP000650.1 6 20140515 272620 Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN5 CP000651.1 6 20140515 272620 Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN6 CP000652.1 6 20140515 272620 Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN7 AP006726.1 5 20110301 484021 Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044, plasmid pK2044 FO203500.1 3 20150417 861365 Klebsiella pneumoniae subsp. rhinoscleromatis SB3432 plasmid pKRH AY033498.1 2 20040225 160057 Klebsiella sp. KCL-2 plasmid pMGD2 X00762.1 7 20060612 28985 Kluyveromyces lactis (killer strain) plasmid k1 X07776.1 9 20050418 28985 Kluyveromyces lactis killer plasmid pGK12 X01095.1 10 20081023 28985 Kluyveromyces lactis plasmid pGKL1 X03961.1 6 20081023 28985 Kluyveromyces lactis plasmid pKD1 Y17109.1 1 19980427 33995 Komagataeibacter europaeus plasmid pAEU601 M18275.1 5 20110311 4955 Lachancea fermentati plasmid pSM1 FLP X56553.1 7 20081023 4914 Lachancea waltii plasmid pKW1 FN667595.1 1 20100513 89059 Lactobacillus acidipiscis cryptic plasmid pLAC1 strain ACA-DC 1533 AB081463.1 4 20100615 1579 Lactobacillus acidophilus plasmid pLA103 D88438.1 7 20051208 1579 Lactobacillus acidophilus plasmid pLA106 AB118106.1 2 20060524 1580 Lactobacillus brevis plasmid pRH45II CP000417.1 7 20140515 387344 Lactobacillus brevis ATCC 367 plasmid 1 CP000418.1 7 20140515 387344 Lactobacillus brevis ATCC 367 plasmid 2 AP012168.1 1 20130329 1001583 Lactobacillus brevis KB290 plasmid pKB290-1 AP012169.1 1 20130329 1001583 Lactobacillus brevis KB290 plasmid pKB290-2 AP012170.1 1 20130329 1001583 Lactobacillus brevis KB290 plasmid pKB290-3 AP012171.1 1 20130329 1001583 Lactobacillus brevis KB290 plasmid pKB290-4 AP012172.1 1 20130329 1001583 Lactobacillus brevis KB290 plasmid pKB290-5 AP012173.1 1 20130329 1001583 Lactobacillus brevis KB290 plasmid pKB290-6 AP012174.1 1 20130329 1001583 Lactobacillus brevis KB290 plasmid pKB290-7 AP012175.1 1 20130329 1001583 Lactobacillus brevis KB290 plasmid pKB290-8 AP012176.1 1 20130329 1001583 Lactobacillus brevis KB290 plasmid pKB290-9 DQ116709.1 2 20080109 1582 Lactobacillus casei plasmid pSMA23 AB119526.1 2 20070915 1582 Lactobacillus casei plasmid pYIT356 HQ259051.1 3 20120108 1582 Lactobacillus casei strain TISTR1341 plasmid pRCEID3.2 HQ259052.1 3 20120108 1582 Lactobacillus casei strain TISTR1341 plasmid pRCEID13.9 CP000424.1 7 20140515 321967 Lactobacillus casei ATCC 334 plasmid 1 CP000935.1 8 20150225 498216 Lactobacillus casei str. Zhang plasmid plca36 AP012545.1 2 20131010 219334 Lactobacillus casei subsp. casei ATCC 393 plasmid pLBCZ-1 AP012546.1 2 20131010 219334 Lactobacillus casei subsp. casei ATCC 393 plasmid pLBCZ-2 AF200347.3 6 20080112 28038 Lactobacillus curvatus plasmid pRC18 Z50864.1 2 20050418 1584 Lactobacillus delbrueckii plasmid pWS58 EF196093.1 2 20070714 1585 Lactobacillus delbrueckii subsp. bulgaricus plasmid pDOJ1 AF236060.1 2 20030210 1585 Lactobacillus delbrueckii subsp. bulgaricus plasmid pLBB1 AJ421486.1 3 20061114 29397 Lactobacillus delbrueckii subsp. lactis plasmid pJBL2 AF109691.1 3 20030702 29397 Lactobacillus delbrueckii subsp. lactis plasmid pLL1212 AJ421627.1 5 20061114 29397 Lactobacillus delbrueckii subsp. lactis plasmid pN42 EU429343.1 1 20090101 1612 Lactobacillus farciminis strain KCTC3681 plasmid pLF24 AF378372.1 4 20050415 1613 Lactobacillus fermentum plasmid pKC5b AJ488494.2 6 20081023 1613 Lactobacillus fermentum plasmid pLME300 AB436615.1 2 20090929 1596 Lactobacillus gasseri plasmid pLgLA39 AJ222725.1 2 20050415 1587 Lactobacillus helveticus plasmid pLH1 FJ851149.1 1 20100811 1587 Lactobacillus helveticus strain R0052 plasmid pIR52-1 J04240.1 5 20000304 44272 Lactobacillus helveticus subsp. jugurti plasmid pLJ1 AP014681.1 1 20141111 1193095 Lactobacillus hokkaidonensis plasmid pLOOC260-1 AP014682.1 1 20141111 1193095 Lactobacillus hokkaidonensis plasmid pLOOC260-2 FN357112.1 2 20150227 633699 Lactobacillus johnsonii FI9785 plasmid p9785L AY862141.1 2 20090409 633699 Lactobacillus johnsonii FI9785 plasmid p9785S EU255257.1 1 20071124 1597 Lactobacillus paracasei plasmid pMA3 FM246455.2 5 20100727 47714 Lactobacillus paracasei subsp. paracasei plasmid pSJ2-8 AY662330.1 2 20051201 47714 Lactobacillus paracasei subsp. paracasei strain NFBC338 plasmid pCD01 AY662331.1 2 20051201 47714 Lactobacillus paracasei subsp. paracasei strain NFBC338 plasmid pCD02 AP012542.1 2 20131010 1226298 Lactobacillus paracasei subsp. paracasei JCM 8130 plasmid pLBPC-1 AP012543.1 2 20131010 1226298 Lactobacillus paracasei subsp. paracasei JCM 8130 plasmid pLBPC-2 GU380289.1 4 20110128 903522 Lactobacillus paracasei TXW plasmid pTXW FN394966.1 2 20090629 1589 Lactobacillus pentosus p1-4 plasmid strain F121-1 AB450918.1 1 20080803 1590 Lactobacillus plantarum L137 plasmid pLTK13 AJ628941.1 3 20050209 1590 Lactobacillus plantarum plasmid p256 Z11717.1 7 19930630 1590 Lactobacillus plantarum plasmid pA1 J03319.1 6 20121101 1590 Lactobacillus plantarum plasmid pC30il FJ755814.1 1 20091001 1590 Lactobacillus plantarum plasmid pLD1 FJ374272.1 1 20090428 1590 Lactobacillus plantarum plasmid pLFE1 AY096004.1 2 20030628 1590 Lactobacillus plantarum plasmid pLP2000 FJ375766.1 1 20081031 1590 Lactobacillus plantarum plasmid pLP2111 AY096005.1 2 20030628 1590 Lactobacillus plantarum plasmid pLP9000 EU881985.1 2 20090123 1590 Lactobacillus plantarum plasmid pLR1 AB024514.1 3 20010302 1590 Lactobacillus plantarum plasmid pLTK2 EF690364.2 3 20080730 1590 Lactobacillus plantarum plasmid pM4 AF440277.1 5 20061114 1590 Lactobacillus plantarum plasmid pMD5057 AJ716330.1 1 20041104 1590 Lactobacillus plantarum plasmid pPB1 HQ116412.1 2 20110518 1590 Lactobacillus plantarum strain PC518 plasmid pLPI8 GU195642.1 1 20091124 1590 Lactobacillus plantarum strain S1 plasmid pLP2140 GU363552.1 2 20100704 1590 Lactobacillus plantarum strain XY3 plasmid pXY3 CP002223.2 7 20140515 889932 Lactobacillus plantarum subsp. plantarum ST-III plasmid pST-III CR377164.1 4 20150227 220668 Lactobacillus plantarum WCFS1 plasmid pWCFS101 CR377165.1 5 20150227 220668 Lactobacillus plantarum WCFS1 plasmid pWCFS102 CR377166.1 4 20150227 220668 Lactobacillus plantarum WCFS1 plasmid pWCFS103 AF205068.1 1 20030112 1598 Lactobacillus reuteri endogenous plasmid U21859.1 3 19991215 1598 Lactobacillus reuteri plasmid pGT232 EF432638.1 1 20080401 1598 Lactobacillus reuteri plasmid pILR091 EU583804.1 2 20081229 1598 Lactobacillus reuteri plasmid pLR581 EU596446.1 2 20081229 1598 Lactobacillus reuteri plasmid pLR585 AY082384.1 1 20020404 1598 Lactobacillus reuteri plasmid pTE44 GU108604.1 1 20100928 349123 Lactobacillus reuteri 100-23 plasmid pGT231 CP001155.1 1 20080914 486408 Lactobacillus rhamnosus HN001 plasmid pLR001 CP001156.1 1 20080914 486408 Lactobacillus rhamnosus HN001 plasmid pLR002 FM179324.1 3 20150227 568704 Lactobacillus rhamnosus Lc 705 plasmid EF605268.1 1 20080227 1599 Lactobacillus sakei plasmid pLS55 AF438419.1 4 20050415 1599 Lactobacillus sakei plasmid pRV500 EU185047.1 2 20090624 1599 Lactobacillus sakei plasmid pYSI8 EU555173.1 1 20081229 1599 Lactobacillus sakei strain BM5 plasmid pYC2 CP002035.1 6 20140515 712961 Lactobacillus salivarius CECT 5713 plasmid pHN1 CP002036.1 6 20140515 712961 Lactobacillus salivarius CECT 5713 plasmid pHN2 CP002037.1 6 20140515 712961 Lactobacillus salivarius CECT 5713 plasmid pHN3 CP000234.1 8 20140515 362948 Lactobacillus salivarius UCC118 plasmid pMP118 AF488831.1 10 20140515 362948 Lactobacillus salivarius UCC118 plasmid pSF118-20 AF488832.1 12 20140515 362948 Lactobacillus salivarius UCC118 plasmid pSF118-44 AF310974.1 7 20121101 1248330 Lactobacillus sp. PC121B plasmid p121BS HE650695.1 3 20120906 1363 Lactococcus garvieae plasmid pGL1, strain 21881 HE650696.1 3 20120906 1363 Lactococcus garvieae plasmid pGL2, strain 21881 HE650697.1 3 20120906 1363 Lactococcus garvieae plasmid pGL3, strain 21881 AB290882.1 2 20080621 1363 Lactococcus garvieae plasmid pKL0018 AF409136.1 2 20050415 1358 Lactococcus lactis citrate permease plasmid pCRL1127 AF207855.1 5 20050415 1358 Lactococcus lactis plasmid pAH33 AF153414.1 7 20061114 1358 Lactococcus lactis plasmid pCIS3 U26594.2 5 20061202 1358 Lactococcus lactis plasmid pCL2.1 AF380336.1 2 20050415 1358 Lactococcus lactis plasmid pCRL291.1 AY849557.2 3 20070501 1358 Lactococcus lactis plasmid pGdh442 AF116286.2 5 20050415 1358 Lactococcus lactis plasmid pIL105 U44843.1 7 20061114 1358 Lactococcus lactis plasmid pND324 DQ534432.1 1 20060906 1358 Lactococcus lactis plasmid pNP40 DQ149242.1 2 20051208 1358 Lactococcus lactis plasmid pSK11A DQ149243.1 2 20051208 1358 Lactococcus lactis plasmid pSK11B DQ149244.1 2 20051208 1358 Lactococcus lactis plasmid pSK11L DQ149245.1 2 20051208 1358 Lactococcus lactis plasmid pSK11P U16027.2 12 20061114 1358 Lactococcus lactis plasmid pSRQ700 U35629.2 13 20061114 1358 Lactococcus lactis plasmid pSRQ800 AF001314.2 7 20050415 1358 Lactococcus lactis plasmid pSRQ900 L75827.1 7 20121101 1358 Lactococcus lactis plasmid pWC1 X56954.1 10 19911018 1358 Lactococcus lactis plasmid pWV01 EU289287.1 1 20081216 1358 Lactococcus lactis strain KLDS4.0319-3 plasmid pKL001 Z22704.1 9 20061114 1358 Lactococcus lactis subsp. cremoris plasmid pWVO2 X92946.1 21 20081023 1358 Lactococcus lactis subsp. lactis plasmid pK214 AE001272.1 6 20100310 1358 Lactococcus lactis DPC3147 plasmid pMRC01 AB198069.1 2 20061114 1359 Lactococcus lactis subsp. cremoris plasmid pAG6 AF247159.1 5 20061114 1359 Lactococcus lactis subsp. cremoris plasmid pHP003 AF036485.2 12 20061114 1359 Lactococcus lactis subsp. cremoris plasmid pNZ4000 AY026767.1 5 20031126 1359 Lactococcus lactis subsp. cremoris strain P8-2-47 plasmid pBM02 CP000426.1 8 20140515 272622 Lactococcus lactis subsp. cremoris SK11 plasmid 1 CP000427.1 7 20140515 272622 Lactococcus lactis subsp. cremoris SK11 plasmid 2 CP000428.1 9 20140515 272622 Lactococcus lactis subsp. cremoris SK11 plasmid 3 CP000429.1 9 20140515 272622 Lactococcus lactis subsp. cremoris SK11 plasmid 4 CP000430.1 7 20140515 272622 Lactococcus lactis subsp. cremoris SK11 plasmid 5 AF056207.2 4 20050415 1360 Lactococcus lactis subsp. lactis isolate BGMN1-5 plasmid pMN5 AF243383.1 4 20050415 1360 Lactococcus lactis subsp. lactis plasmid pAH82 AF242367.1 6 20050415 1360 Lactococcus lactis subsp. lactis plasmid pBL1 AF179848.1 2 20050415 1360 Lactococcus lactis subsp. lactis plasmid pCI305 DQ917780.1 3 20070919 1360 Lactococcus lactis subsp. lactis plasmid pL2 DQ288662.1 7 20060531 1360 Lactococcus lactis subsp. lactis strain M14 plasmid pAR141 AF306799.1 11 20121101 1360 Lactococcus lactis subsp. lactis strain MJC15 plasmid pCD4 AB079380.1 4 20071206 44688 Lactococcus lactis subsp. lactis bv. diacetylactis cryptic plasmid pDR1-1B AB079381.2 4 20061114 44688 Lactococcus lactis subsp. lactis bv. diacetylactis cryptic plasmid pDR1-1 DQ089807.2 3 20071103 44688 Lactococcus lactis subsp. lactis bv. diacetylactis plasmid pDBORO AJ550509.1 5 20090118 44688 Lactococcus lactis subsp. lactis bv. diacetylactis plasmid pS7a AJ550510.1 5 20090118 44688 Lactococcus lactis subsp. lactis bv. diacetylactis plasmid pS7b CP001835.1 5 20140515 684738 Lactococcus lactis subsp. lactis KF147 plasmid pKF147A AY858987.1 3 20051020 168471 Laribacter hongkongensis plasmid pHLHK8 EF679779.1 1 20080221 168471 Laribacter hongkongensis plasmid pHLHK22 AM180253.1 4 20150227 363253 Lawsonia intracellularis PHE/MN1-00 plasmid 1 AM180254.1 4 20150227 363253 Lawsonia intracellularis PHE/MN1-00 plasmid 2 AM180255.1 4 20150227 363253 Lawsonia intracellularis PHE/MN1-00 plasmid 3 LN614828.1 1 20141021 1212491 Legionella fallonii LLAP-10 plasmid LLAP10_pA, LN614829.1 1 20141021 1212491 Legionella fallonii LLAP-10 plasmid LLAP10_pB, FN650141.1 3 20150227 661367 Legionella longbeachae NSW150 plasmid pLLO CR628339.1 5 20150227 297245 Legionella pneumophila str. Lens plasmid pLPL CR628338.1 5 20150227 297246 Legionella pneumophila str. Paris plasmid pLPP FQ958212.1 2 20150227 91891 Legionella pneumophila subsp. pneumophila str. Lorraine plasmid pLELO AF176225.1 1 19990907 1184 Leptolyngbya boryana plasmid pPBS1 AP014643.1 1 20150215 1184 Leptolyngbya boryana plasmid pLBA DNA strain: dg5 AP014639.1 1 20150215 1184 Leptolyngbya boryana plasmid pLBA DNA strain: IAM M-101 AP014644.1 1 20150215 1184 Leptolyngbya boryana plasmid pLBX DNA strain: dg5 AP014640.1 1 20150215 1184 Leptolyngbya boryana plasmid pLBX DNA strain: IAM M-101 AP014645.1 1 20150215 1184 Leptolyngbya boryana plasmid pLBY DNA strain: dg5 AP014641.1 1 20150215 1184 Leptolyngbya boryana plasmid pLBY DNA strain: IAM M-101 D10842.1 6 19990121 47253 Leptolyngbya foveolarum plasmid pPF1 S46711.1 8 20050417 272136 Leptolyngbya sp. PCC 6402 plasmid PRF1 CP000779.1 4 20140515 355278 Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)' plasmid p74 CP000788.1 4 20140515 456481 Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' plasmid p74 AY941098.1 2 20051105 180 Leptospirillum ferrooxidans plasmid p49879.1 AY941099.1 2 20051105 180 Leptospirillum ferrooxidans plasmid p49879.2 CP003852.1 5 20140515 1229758 Leuconostoc carnosum JB16 plasmid pKLC1 CP003853.1 5 20140515 1229758 Leuconostoc carnosum JB16 plasmid pKLC2 CP003854.1 5 20140515 1229758 Leuconostoc carnosum JB16 plasmid pKLC3 CP003855.1 5 20140515 1229758 Leuconostoc carnosum JB16 plasmid pKLC4 AB360637.2 2 20100513 33964 Leuconostoc citreum plasmid pCB42 AY737645.1 2 20050826 33964 Leuconostoc citreum plasmid pIH01 AJ493278.1 5 20061114 33964 Leuconostoc citreum plasmid pLC22R FJ040197.1 1 20090415 33964 Leuconostoc citreum strain C4 plasmid pCC3 EU784088.1 2 20090628 33964 Leuconostoc citreum strain C4 plasmid pFMBL1 DQ489740.1 3 20140203 349519 Leuconostoc citreum KM20 plasmid pLCK1 DQ489737.1 3 20140203 349519 Leuconostoc citreum KM20 plasmid pLCK2 DQ489738.1 3 20140203 349519 Leuconostoc citreum KM20 plasmid pLCK3 DQ489739.1 3 20140203 349519 Leuconostoc citreum KM20 plasmid pLCK4 CP001757.1 6 20140515 762051 Leuconostoc kimchii IMSNU 11154 plasmid LkipL48 CP001753.1 6 20140515 762051 Leuconostoc kimchii IMSNU 11154 plasmid LkipL4701 CP001754.1 6 20140515 762051 Leuconostoc kimchii IMSNU 11154 plasmid LkipL4704 CP001755.1 6 20140515 762051 Leuconostoc kimchii IMSNU 11154 plasmid LkipL4719 CP001756.1 6 20140515 762051 Leuconostoc kimchii IMSNU 11154 plasmid LkipL4726 L25529.1 8 20121101 1246 Leuconostoc lactis plasmid pCI411 AY648696.1 2 20070424 1245 Leuconostoc mesenteroides strain SY2 plasmid pFMBL1 AJ272077.1 5 20061114 33967 Leuconostoc mesenteroides subsp. mesenteroides cryptic plasmid pTXL1 Z99436.1 4 20040805 33967 Leuconostoc mesenteroides subsp. mesenteroides plasmid pFR18 CP000415.1 9 20140515 203120 Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 plasmid pLEUM1 FR667693.1 4 20150227 1641 Listeria grayi DSM20601 plasmid pLGUG1 AL592102.1 6 20150227 272626 Listeria innocua Clip11262 plasmid pLI100 GU244485.1 1 20100616 1639 Listeria monocytogenes strain Lm1 plasmid pLM33 FR667691.1 5 20150227 1639 Listeria monocytogenes serotype 1-2c str. SLCC2372 plasmid pLM1-2cUG1 FR667692.1 5 20150227 1639 Listeria monocytogenes serotype 1-2b str. SLCC2755 plasmid pLM1-2bUG1 CP001603.1 7 20140515 653938 Listeria monocytogenes 08-5578 plasmid pLM5578 HG813250.1 3 20150227 1288295 Listeria monocytogenes 6179 plasmid LM6179_p HG813248.1 2 20150211 1437838 Listeria monocytogenes R479a plasmid pLMR479a FR667690.1 5 20150227 863767 Listeria monocytogenes serotype 7 str. SLCC2482 plasmid pLM7UG1 AY325804.1 3 20070615 1421 Lysinibacillus sphaericus plasmid pLG CP000818.1 7 20140516 444177 Lysinibacillus sphaericus C3-41 plasmid pBsph AP009485.1 1 20090130 458233 Macrococcus caseolyticus JCSC5402 plasmid pMCCL1 AP009486.1 2 20090407 458233 Macrococcus caseolyticus JCSC5402 plasmid pMCCL2 AP009487.1 1 20090130 458233 Macrococcus caseolyticus JCSC5402 plasmid pMCCL3 AP009488.1 1 20090130 458233 Macrococcus caseolyticus JCSC5402 plasmid pMCCL4 AP009489.1 1 20090130 458233 Macrococcus caseolyticus JCSC5402 plasmid pMCCL5 AP009490.1 1 20090130 458233 Macrococcus caseolyticus JCSC5402 plasmid pMCCL6 AP009491.1 1 20090130 458233 Macrococcus caseolyticus JCSC5402 plasmid pMCCL7 AP009492.1 1 20090130 458233 Macrococcus caseolyticus JCSC5402 plasmid pMCCL8 FO538766.1 4 20150307 1288970 Magnetospira sp. QH-2 plasmid MGMAQ_p CU459004.1 4 20150227 55518 Magnetospirillum gryphiswaldense plasmid AB116387.1 2 20060227 84159 Magnetospirillum magneticum plasmid pMGT AJ966516.1 4 20050804 75985 Mannheimia haemolytica plasmid pCCK3259 AJ249249.1 3 20051003 75985 Mannheimia haemolytica plasmid pMHSCS1 AJ319822.1 3 20051003 85404 Mannheimia varigena MVSCS1 plasmid CP001979.1 3 20111014 225937 Marinobacter adhaerens HP15 plasmid pHP-42 CP001980.1 3 20111014 225937 Marinobacter adhaerens HP15 plasmid pHP-187 CP000515.1 7 20140515 351348 Marinobacter hydrocarbonoclasticus VT8 plasmid pMAQU01 CP000516.1 5 20140515 351348 Marinobacter hydrocarbonoclasticus VT8 plasmid pMAQU02 U75508.1 2 19971029 1371 Marinococcus halophilus plasmid pPL1 CP002043.1 6 20140807 526227 Meiothermus silvanus DSM 9946 plasmid pMESIL01 CP002044.1 6 20140807 526227 Meiothermus silvanus DSM 9946 plasmid pMESIL02 AP012201.1 2 20110726 940190 Melissococcus plutonius ATCC 35311 plasmid pMP1 BA000013.4 5 20100427 266835 Mesorhizobium loti MAFF303099 plasmid pMLa AP003017.1 8 20090312 266835 Mesorhizobium loti MAFF303099 plasmid pMLb CP001697.1 4 20140515 573064 Methanocaldococcus fervens AG86 plasmid pMEFER01 L77118.1 37 20140430 243232 Methanocaldococcus jannaschii DSM 2661 large extra-chromosomal element L77119.1 35 20140430 243232 Methanocaldococcus jannaschii DSM 2661 small extra-chromosomal element CP001902.1 4 20140515 644281 Methanocaldococcus sp. FS406-22 plasmid pFS01 CP001788.1 4 20140515 579137 Methanocaldococcus vulcanius M7 plasmid pMETVU01 CP001789.1 4 20140515 579137 Methanocaldococcus vulcanius M7 plasmid pMETVU02 U47023.1 1 20100823 39152 Methanococcus maripaludis plasmid pURB500 CP000610.1 4 20140515 402880 Methanococcus maripaludis C5 plasmid pMMC501 CP002070.1 2 20131216 644295 Methanohalobium evestigatum Z-7303 plasmid pMETEV01 AY523658.1 1 20040128 2176 Methanohalophilus mahii plasmid pML U78295.1 4 20070714 2214 Methanosarcina acetivorans plasmid pC2A CP000098.1 6 20140515 269797 Methanosarcina barkeri str. fusaro plasmid 1 CP001711.1 5 20140515 79929 Methanothermobacter marburgensis str. Marburg plasmid pMTBMA4 X17205.1 6 19990211 145262 Methanothermobacter thermautotrophicus plasmid pME2001 X68366.1 7 20061114 145262 Methanothermobacter thermautotrophicus strain THF plasmid pFV1 X68367.1 8 20061114 145262 Methanothermobacter thermautotrophicus strain Z-245 plasmid pFZ1 AF145236.1 2 20010704 145262 Methanothermobacter thermautotrophicus strain ZH3 plasmid pME2200 CP000556.1 7 20140515 420662 Methylibium petroleiphilum PM1 plasmid RPME01 CP001512.1 4 20140516 272630 Methylobacterium extorquens AM1 plasmid p1META1 CP001513.1 4 20140516 272630 Methylobacterium extorquens AM1 plasmid p2META1 CP001514.1 4 20140516 272630 Methylobacterium extorquens AM1 plasmid p3META1 CP001299.1 3 20131212 440085 Methylobacterium extorquens CM4 plasmid pMCHL01 CP001300.1 3 20131212 440085 Methylobacterium extorquens CM4 plasmid pMCHL02 FP103043.1 5 20150227 661410 Methylobacterium extorquens DM4 plasmid p1METDI FP103044.1 5 20150227 661410 Methylobacterium extorquens DM4 plasmid p2METDI CP001350.1 2 20131212 460265 Methylobacterium nodulans ORS 2060 plasmid pMNOD01 CP001351.1 2 20131212 460265 Methylobacterium nodulans ORS 2060 plasmid pMNOD02 CP001352.1 2 20131212 460265 Methylobacterium nodulans ORS 2060 plasmid pMNOD03 CP001353.1 2 20131212 460265 Methylobacterium nodulans ORS 2060 plasmid pMNOD04 CP001354.1 2 20131212 460265 Methylobacterium nodulans ORS 2060 plasmid pMNOD05 CP001355.1 2 20131212 460265 Methylobacterium nodulans ORS 2060 plasmid pMNOD06 CP001356.1 2 20131212 460265 Methylobacterium nodulans ORS 2060 plasmid pMNOD07 CP001030.1 2 20131212 441620 Methylobacterium populi BJ001 plasmid pMPOP01 CP001031.1 2 20131212 441620 Methylobacterium populi BJ001 plasmid pMPOP02 CP001002.1 2 20131212 426355 Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01 CP001003.1 2 20131212 426355 Methylobacterium radiotolerans JCM 2831 plasmid pMRAD02 CP001004.1 2 20131212 426355 Methylobacterium radiotolerans JCM 2831 plasmid pMRAD03 CP001005.1 2 20131212 426355 Methylobacterium radiotolerans JCM 2831 plasmid pMRAD04 CP001006.1 2 20131212 426355 Methylobacterium radiotolerans JCM 2831 plasmid pMRAD05 CP001007.1 2 20131212 426355 Methylobacterium radiotolerans JCM 2831 plasmid pMRAD06 CP001008.1 2 20131212 426355 Methylobacterium radiotolerans JCM 2831 plasmid pMRAD07 CP001009.1 2 20131212 426355 Methylobacterium radiotolerans JCM 2831 plasmid pMRAD08 CP000944.1 2 20131212 426117 Methylobacterium sp. 4-46 plasmid pM44601 CP000945.1 2 20131212 426117 Methylobacterium sp. 4-46 plasmid pM44602 FO082061.1 4 20150327 271065 Methylomicrobium alcaliphilum str. 20Z plasmid MEALZ_p AF233873.1 2 20010531 40223 Methylophaga thalassica 2kb cryptic plasmid CP001675.1 5 20140515 582744 Methylovorus glucosetrophus SIP3-4 plasmid pMsip01 CP001676.1 5 20140515 582744 Methylovorus glucosetrophus SIP3-4 plasmid pMsip02 AJ439695.1 2 20021122 1270 Micrococcus luteus cryptic plasmid MLU1 AY034092.1 3 20050416 161213 Micrococcus sp. 28 plasmid pSD10 D17448.1 10 20051208 1126 Microcystis aeruginosa plasmid pMA2 D10841.1 6 19990121 1126 Microcystis aeruginosa small plasmid pMA1 DNA U94409.1 3 20030703 1126 Microcystis aeruginosa strain UV025 plasmid pMa025 AY860110.1 2 20051028 47874 Micromonospora rosaria strain SCC2095 plasmid pMR2 AF339846.1 3 20050415 155537 Microscilla sp. PRE1 plasmid pSD15 AB169976.1 3 20061102 476 Moraxella bovis plasmid pMBO-1 AB169977.1 3 20061102 476 Moraxella bovis plasmid pMBO-2 GQ998872.1 2 20130317 476 Moraxella bovis strain ATCC 10900 plasmid pMbo4.6 AY167745.1 2 20050428 480 Moraxella catarrhalis mobilizable plasmid pEMCJH03 AF129811.3 6 20090130 480 Moraxella catarrhalis plasmid pLQ510 AJ224744.1 2 19980601 77152 Moraxella sp. TA144 plasmid pTA144 Dw AJ224743.1 2 20010914 77152 Moraxella sp. TA144 plasmid pTA144 Up CU458745.1 5 20150227 561007 Mycobacterium abscessus ATCC 19977 plasmid pMAB23 AY056023.1 3 20050416 1764 Mycobacterium avium plasmid pVT2 AP012556.1 2 20150222 1229671 Mycobacterium avium subsp. hominissuis TH135 plasmid pMAH135 AF312688.1 2 20050415 28045 Mycobacterium celatum plasmid pCLP M23557.1 7 20121101 1766 Mycobacterium fortuitum plasmid pAL5000 CP000657.1 5 20140515 350054 Mycobacterium gilvum PYR-GCK plasmid pMFLV01 CP000658.1 4 20140515 350054 Mycobacterium gilvum PYR-GCK plasmid pMFLV02 CP000659.1 5 20140515 350054 Mycobacterium gilvum PYR-GCK plasmid pMFLV03 EU271968.1 2 20140203 459424 Mycobacterium liflandii 128FXT plasmid pMUM002 CP000895.1 6 20140516 216594 Mycobacterium marinum M plasmid pMM23 CP000519.1 5 20140515 189918 Mycobacterium sp. KMS plasmid pMKMS01 CP000520.1 5 20140515 189918 Mycobacterium sp. KMS plasmid pMKMS02 BX649209.1 3 20081023 1809 Mycobacterium ulcerans plasmid pMUM001 AF257325.1 2 20021024 2105 Mycoplasma leachii plasmid pBG7AU M25059.1 5 20140620 2102 Mycoplasma mycoides Plasmid pADB201 FQ790215.1 3 20150227 862259 Mycoplasma mycoides subsp. capri LC str. 95010 plasmid EU429323.1 1 20080802 51365 Mycoplasma yeatsii plasmid pMyBK1 EU137666.1 3 20080331 33 Myxococcus fulvus strain 124B02 plasmid pMF1 AB298288.1 1 20070801 5762 Naegleria gruberi rDNA plasmid CP001035.1 5 20140515 457570 Natranaerobius thermophilus JW/NM-WN-LF plasmid pNTHE01 CP001036.1 5 20140515 457570 Natranaerobius thermophilus JW/NM-WN-LF plasmid pNTHE02 CP001933.1 5 20140515 547559 Natrialba magadii ATCC 43099 plasmid pNMAG01 CP001934.1 5 20140515 547559 Natrialba magadii ATCC 43099 plasmid pNMAG02 CP001935.1 5 20140515 547559 Natrialba magadii ATCC 43099 plasmid pNMAG03 AY588480.1 2 20080805 290611 Natrinema sp. CX2021 plasmid pZMX201 AY048850.1 3 20120503 406552 Natrinema sp. J7-2 plasmid pHH205 AF474073.1 2 20050415 198929 Natronobacterium sp. AS-7091 plasmid pNB101 CR936259.1 13 20141129 348780 Natronomonas pharaonis DSM 2160 plasmid PL23 CR936258.1 13 20141129 348780 Natronomonas pharaonis DSM 2160 plasmid PL131 DQ355980.1 2 20070303 485 Neisseria gonorrhoeae beta-lactamase plasmid pSJ5.2 FJ172221.1 2 20090414 485 Neisseria gonorrhoeae plasmid pCmGFP U20374.1 5 20050417 485 Neisseria gonorrhoeae plasmid pJD4 GU479466.1 1 20100421 485 Neisseria gonorrhoeae strain 5289 plasmid pEP5289 M10316.1 6 20121101 485 Neisseria gonorrhoeae strain UM01 plasmid pJD1 CP001051.1 5 20140515 521006 Neisseria gonorrhoeae NCCP11945 plasmid pNGK AY532623.1 2 20060809 486 Neisseria lactamica plasmid pNL01 DQ223897.1 2 20070823 486 Neisseria lactamica plasmid pNL3.1 DQ227327.1 2 20070823 486 Neisseria lactamica plasmid pNL3.2 DQ227324.1 3 20070823 486 Neisseria lactamica plasmid pNL7.1 DQ229163.1 3 20070823 486 Neisseria lactamica plasmid pNL9 DQ227323.1 3 20070823 486 Neisseria lactamica plasmid pNL11 DQ229164.1 3 20070712 486 Neisseria lactamica plasmid pNL14 DQ227325.1 3 20070823 486 Neisseria lactamica plasmid pNL15 DQ227326.1 3 20070823 486 Neisseria lactamica plasmid pNL18.1 DQ229165.1 3 20070823 486 Neisseria lactamica plasmid pNL18.2 DQ223898.1 2 20070823 486 Neisseria lactamica plasmid pNL750149 DQ229166.1 3 20070823 486 Neisseria lactamica plasmid pNL871104 DQ223899.1 2 20070823 486 Neisseria lactamica plasmid pNL932024 AJ277475.1 2 20010509 487 Neisseria meningitidis plasmid pJS-B HG938357.1 3 20150227 399 Neorhizobium galegae str. HAMBI 1141 plasmid pHAMBI1141b AY553872.1 1 20050319 5142 Neurospora intermedia isolate M1991-60 plasmid pMADDUR1, mitochondrion AY553873.1 1 20050319 5142 Neurospora intermedia isolate M1991-107 plasmid pVS, mitochondrion L42455.1 3 20000307 5142 Neurospora intermedia plasmid Harbin-1 CP000320.1 6 20140515 323097 Nitrobacter hamburgensis X14 plasmid 1 CP000321.1 6 20140515 323097 Nitrobacter hamburgensis X14 plasmid 2 CP000322.1 6 20140515 323097 Nitrobacter hamburgensis X14 plasmid 3 CP001799.1 5 20140515 472759 Nitrosococcus halophilus Nc 4 plasmid pNHAL01 CP000126.1 6 20140515 323261 Nitrosococcus oceani ATCC 19707 plasmid A CP002087.1 4 20140515 105559 Nitrosococcus watsonii C-113 plasmid pNWAT01 CP002088.1 4 20140515 105559 Nitrosococcus watsonii C-113 plasmid pNWAT02 CP000451.1 7 20140515 335283 Nitrosomonas eutropha C91 Plasmid1 CP000452.1 7 20140515 335283 Nitrosomonas eutropha C91 Plasmid2 AB018481.1 2 19990630 42353 Nitrosomonas sp. ENI-11 plasmid pAYL AB018480.1 2 19990630 42353 Nitrosomonas sp. plasmid pAYS strain:ENI-11. CP000104.1 6 20140515 323848 Nitrosospira multiformis ATCC 25196 plasmid 1 CP000105.1 7 20140515 323848 Nitrosospira multiformis ATCC 25196 plasmid 2 CP000106.1 6 20140515 323848 Nitrosospira multiformis ATCC 25196 plasmid 3 AP006619.1 7 20080517 247156 Nocardia farcinica IFM 10152 plasmid pNF1 AP006620.1 7 20080517 247156 Nocardia farcinica IFM 10152 plasmid pNF2 DQ399903.1 2 20061104 373212 Nocardia sp. 107 plasmid pXT107 DQ140180.1 4 20051208 312532 Nocardia sp. C-14-1 plasmid pC1 CP000508.1 6 20140515 196162 Nocardioides sp. JS614 plasmid pNOCA01 CP002041.1 6 20140515 446468 Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 plasmid pNDAS01 DQ399904.1 1 20060302 373213 Nocardiopsis sp. 90127 plasmid pSQ10 CP001038.1 4 20140515 63737 Nostoc punctiforme PCC 73102 plasmid pNPUN01 CP001039.1 4 20140515 63737 Nostoc punctiforme PCC 73102 plasmid pNPUN02 CP001040.1 4 20140515 63737 Nostoc punctiforme PCC 73102 plasmid pNPUN03 CP001041.1 4 20140515 63737 Nostoc punctiforme PCC 73102 plasmid pNPUN04 CP001042.1 4 20140515 63737 Nostoc punctiforme PCC 73102 plasmid pNPUN05 BA000020.2 4 20090312 103690 Nostoc sp. PCC 7120 plasmid pCC7120alpha AP003602.1 6 20090312 103690 Nostoc sp. PCC 7120 plasmid pCC7120beta AP003604.1 9 20120809 103690 Nostoc sp. PCC 7120 plasmid pCC7120delta AP003605.1 7 20090312 103690 Nostoc sp. PCC 7120 plasmid pCC7120epsilon AP003603.1 7 20090312 103690 Nostoc sp. PCC 7120 plasmid pCC7120gamma AP003606.1 5 20090312 103690 Nostoc sp. PCC 7120 plasmid pCC7120zeta AF516141.1 2 20050415 28072 Nostoc sp. PCC 7524 plasmid pDU1 AF079317.1 6 20050415 48935 Novosphingobium aromaticivorans plasmid pNL1 CP000676.1 5 20140515 279238 Novosphingobium aromaticivorans DSM 12444 plasmid pNL1 CP000677.1 5 20140515 279238 Novosphingobium aromaticivorans DSM 12444 plasmid pNL2 FR856860.1 4 20150227 702113 Novosphingobium sp. PP1Y Lpl large plasmid, complete replicon FR856859.1 4 20150227 702113 Novosphingobium sp. PP1Y Spl small plasmid, complete replicon DQ979387.1 1 20061007 529 Ochrobactrum anthropi plasmid pW240 CP000760.1 6 20140515 439375 Ochrobactrum anthropi ATCC 49188 plasmid pOANT01 CP000761.1 6 20140515 439375 Ochrobactrum anthropi ATCC 49188 plasmid pOANT02 CP000762.1 6 20140515 439375 Ochrobactrum anthropi ATCC 49188 plasmid pOANT03 CP000763.1 6 20140515 439375 Ochrobactrum anthropi ATCC 49188 plasmid pOANT04 AB208028.1 1 20050325 1247 Oenococcus oeni plasmid pOM1 AJ310613.1 2 20011130 1247 Oenococcus oeni plasmid pRS2 AJ310614.1 2 20011130 1247 Oenococcus oeni plasmid pRS3 CP002827.1 7 20150118 504832 Oligotropha carboxidovorans OM5 plasmid pHCG3 AB479508.1 1 20090911 100379 Onion yellows phytoplasma plasmid EcOYNIM_1998 AB479509.1 1 20090911 100379 Onion yellows phytoplasma plasmid EcOYNIM_1999 AB479510.1 1 20090911 100379 Onion yellows phytoplasma plasmid EcOYNIM_2000 AB479511.1 1 20090911 100379 Onion yellows phytoplasma plasmid EcOYNIM_2002-2004 AB479512.1 1 20090911 100379 Onion yellows phytoplasma plasmid EcOYNIM_2005 AB479513.1 1 20090210 100379 Onion yellows phytoplasma plasmid EcOYW1 AB479514.1 1 20090210 100379 Onion yellows phytoplasma plasmid pOYM AB479515.1 1 20090210 100379 Onion yellows phytoplasma plasmid pOYNIM AB480166.1 1 20090911 100379 Onion yellows phytoplasma plasmid pOYNIM_1998-2000 AB480167.1 1 20090911 100379 Onion yellows phytoplasma plasmid pOYNIM_2002-2006 AY513488.1 3 20050416 28251 Ornithobacterium rhinotracheale plasmid pOR1 DQ367664.1 2 20070125 1464 Paenibacillus larvae plasmid pMA67 HE577055.1 3 20150227 1052684 Paenibacillus polymyxa M1 plasmid pPPM1a, complete replicon CP002214.2 7 20150402 886882 Paenibacillus polymyxa SC2 plasmid pSC2 DQ925488.1 1 20061008 78057 Paenibacillus popilliae plasmid pBP68 FN868248.1 2 20110706 549 Pantoea agglomerans cryptic plasmid pPAGA3 strain EGE6 EU092237.1 1 20070916 549 Pantoea agglomerans plasmid pPA3.0 HE617161.1 4 20150227 1123863 Pantoea ananatis LMG 5342 plasmid pPANA10 CP001893.1 5 20140515 712898 Pantoea vagans C9-1 plasmid pPag1 CP001894.1 5 20140515 712898 Pantoea vagans C9-1 plasmid pPag2 CP001895.1 5 20140515 712898 Pantoea vagans C9-1 plasmid pPag3 GQ410978.1 3 20130814 1367847 Paracoccus aminophilus JCM 7686 plasmid pAMI2 GQ468939.1 3 20130814 1367847 Paracoccus aminophilus JCM 7686 plasmid pAMI3 CP000491.1 6 20140515 318586 Paracoccus denitrificans PD1222 plasmid 1 EU043115.1 2 20080420 135742 Paracoccus methylutens strain DM12 plasmid pMTH1 AF482428.1 4 20060531 82367 Paracoccus pantotrophus plasmid pWKS1 AJ884726.1 3 20050628 747 Pasteurella multocida pCCK647 plasmid, isolate 6647 FM179941.1 1 20081016 747 Pasteurella multocida pCCK1900 plasmid, isolate 1900 FJ197818.1 2 20090724 747 Pasteurella multocida plasmid pB1005 FJ234438.1 2 20090724 747 Pasteurella multocida plasmid pB1006 AJ871969.4 5 20060210 747 Pasteurella multocida plasmid pCCK381 FR798946.1 1 20120127 747 Pasteurella multocida plasmid pCCK411, strain U-B411 U57647.1 4 20050417 747 Pasteurella multocida plasmid pIG1 AY232670.1 2 20050416 747 Pasteurella multocida plasmid pJR1 AY232671.1 2 20050416 747 Pasteurella multocida plasmid pJR2 EF426472.1 2 20090514 39647 Paulownia witches'-broom phytoplasma plasmid pPaWBNy-1 EF426473.1 2 20090514 39647 Paulownia witches'-broom phytoplasma plasmid pPaWBNy-2 AY270152.1 1 20030603 35772 Peanut witches'-broom phytoplasma plasmid pPNWB FJ176937.1 2 20090123 29471 Pectobacterium atrosepticum strain SCRI1039 plasmid pECA1039 U02482.2 4 20050417 1254 Pediococcus acidilactici H plasmid pSMB74 DQ220741.1 2 20070911 1254 Pediococcus acidilactici plasmid pEOC01 AF196967.2 2 20051104 51663 Pediococcus damnosus plasmid pF8801 AF069302.1 4 20050415 1255 Pediococcus pentosaceus plasmid pMD136 FM163399.1 1 20090203 1255 Pediococcus pentosaceus plasmid pRS5 FN869858.1 2 20110518 1255 Pediococcus pentosaceus strain ACA-DC 3431 plasmid pPS1 AF033858.2 7 20050415 1255 Pediococcus pentosaceus strain ATCC43200 plasmid pMD136 FJ613505.1 4 20130410 524386 Pedobacter sp. BG5 plasmid pMWHK01 CP000483.1 5 20140515 338966 Pelobacter propionicus DSM 2379 plasmid pPRO1 CP000484.1 4 20140515 338966 Pelobacter propionicus DSM 2379 plasmid pPRO2 AY687385.1 2 20061114 13735 Pelodiscus sinensis mitochondrion AY350745.1 2 20121014 1496 Peptoclostridium difficile plasmid pCD6 AM180356.1 8 20150206 272563 Peptoclostridium difficile 630 plasmid pCD630 FN668942.1 3 20150227 699034 Peptoclostridium difficile BI1 plasmid pCDBI1 FN668943.1 3 20150227 699034 Peptoclostridium difficile BI1 putative phage or plasmid sequence CP001231.1 4 20140515 123214 Persephonella marina EX-H1 plasmid CP002975.1 5 20140515 383629 Phaeobacter gallaeciensis 2.10 plasmid pPGA2_71 CP002974.1 5 20140515 383629 Phaeobacter gallaeciensis 2.10 plasmid pPGA2_95 CP002973.1 5 20140515 383629 Phaeobacter gallaeciensis 2.10 plasmid pPGA2_239 CP002979.1 7 20150118 391619 Phaeobacter inhibens DSM 17395 = CIP 105210 plasmid pPGA1_65 CP002978.1 7 20150118 391619 Phaeobacter inhibens DSM 17395 = CIP 105210 plasmid pPGA1_78 CP002977.1 7 20150118 391619 Phaeobacter inhibens DSM 17395 = CIP 105210 plasmid pPGA1_262 CP000748.1 4 20140515 450851 Phenylobacterium zucineum HLK1 plasmid AB453229.1 2 20130630 38294 Photobacterium damselae subsp. piscicida plasmid pP9014 DQ069059.1 1 20051208 38294 Photobacterium damselae subsp. piscicida plasmid pPHDP10 AB277724.1 5 20100927 38294 Photobacterium damselae subsp. piscicida plasmid pP91278 AB277723.1 5 20100927 38294 Photobacterium damselae subsp. piscicida plasmid pP99-018 CR377818.1 3 20150227 74109 Photobacterium profundum SS9 plasmid 1 FM162592.1 3 20150227 291112 Photorhabdus asymbiotica ATCC43949 plasmid pAT AP012339.1 1 20120329 1142394 Phycisphaera mikurensis NBRC 102666 plasmid pPSMK1 AB000510.1 4 20090127 2155 Phytoplasma sp. plasmid phytoplasma specific extrachromosomal DNA CP001745.1 6 20150115 521674 Planctopirus limnophilus DSM 3776 plasmid pPLIM01 DQ438984.1 1 20060409 378212 Planococcus sp. ZOYM plasmid pPCZ1 DQ438985.1 1 20060409 378212 Planococcus sp. ZOYM plasmid pPCZ2 AP012552.1 1 20131004 891974 Plautia stali symbiont plasmid pPstS1 AP012553.1 1 20131004 891974 Plautia stali symbiont plasmid pPstS2 CP000530.1 5 20140515 365044 Polaromonas naphthalenivorans CJ2 plasmid pPNAP01 CP000531.1 5 20140515 365044 Polaromonas naphthalenivorans CJ2 plasmid pPNAP02 CP000532.1 5 20140515 365044 Polaromonas naphthalenivorans CJ2 plasmid pPNAP03 CP000533.1 5 20140515 365044 Polaromonas naphthalenivorans CJ2 plasmid pPNAP04 CP000534.1 5 20140515 365044 Polaromonas naphthalenivorans CJ2 plasmid pPNAP05 CP000535.1 4 20140515 365044 Polaromonas naphthalenivorans CJ2 plasmid pPNAP06 CP000536.1 4 20140515 365044 Polaromonas naphthalenivorans CJ2 plasmid pPNAP07 CP000537.1 5 20140515 365044 Polaromonas naphthalenivorans CJ2 plasmid pPNAP08 CP000317.1 5 20140515 296591 Polaromonas sp. JS666 plasmid 1 CP000318.1 5 20140515 296591 Polaromonas sp. JS666 plasmid 2 CP001838.1 1 20100202 13642 Polysphondylium pallidum plasmid PPN500 AF002711.1 4 20011211 60925 Porphyra pulchra plasmid Pp6427 AF002712.1 4 20011211 60925 Porphyra pulchra plasmid Pp6859 U30294.1 6 20000304 839 Prevotella ruminicola plasmid pRAM4 AB007909.1 1 20001115 1748 Propionibacterium acidipropionici plasmid pRGO1, strain E214 AJ006662.1 2 20081018 1744 Propionibacterium freudenreichii cryptic plasmid pLME108 AF291751.1 2 20010204 1744 Propionibacterium freudenreichii plasmid p545 AY150274.2 3 20070613 33011 Propionibacterium granulosum cryptic plasmid pPG01 AJ250233.1 5 20051003 1749 Propionibacterium jensenii plasmid pLME106 CP001109.1 4 20140515 290512 Prosthecochloris aestuarii DSM 271 plasmid pPAES01 AM942760.1 5 20150206 584 Proteus mirabilis plasmid pHI4320 AF305615.1 4 20050415 585 Proteus vulgaris plasmid pPvu1 AP004237.1 8 20071116 585 Proteus vulgaris plasmid Rts1 AM901564.1 2 20080918 587 Providencia rettgeri plasmid R7K EU636993.1 3 20081005 336179 Pseudoalteromonas sp. 643A plasmid pKW1 GU198194.1 1 20091216 383749 Pseudoalteromonas sp. BSi20327 plasmid pSM327 AB022096.1 2 20000518 87791 Pseudoalteromonas sp. PS1M3 plasmid pPS1M3 FN689524.1 4 20120314 747457 Pseudoalteromonas sp. SANK 73390 plasmid pTML1 AM261760.1 4 20081023 287 Pseudomonas aeruginosa plasmid pBS228 AM778842.1 2 20080918 287 Pseudomonas aeruginosa plasmid pMATVIM-7 EU410482.1 2 20100704 287 Pseudomonas aeruginosa plasmid pMM1 AJ877225.1 4 20081023 287 Pseudomonas aeruginosa plasmid Rms149 L27758.1 11 20130201 287 Pseudomonas aeruginosa-alpha plasmid U88088.2 5 20050418 43263 Pseudomonas alcaligenes plasmid pRA2 AY887963.3 7 20090507 294 Pseudomonas fluorescens strain PC20 plasmid pNAH20 AM235768.1 2 20070511 216595 Pseudomonas fluorescens SBW25 plasmid pQBR103 AB084167.1 1 20020423 47880 Pseudomonas fulva plasmid pNI10 AB238971.1 7 20130128 303 Pseudomonas putida MT53 plasmid pWW53 AF491307.2 6 20050416 303 Pseudomonas putida NCIB 9816-4 plasmid pDTG1 AB474758.1 9 20140902 303 Pseudomonas putida plasmid pCAR1.2 AB434906.1 5 20131016 303 Pseudomonas putida plasmid pDK1 DNA strain: HS1 AC002061.1 3 20000910 303 Pseudomonas putida Plasmid php11 AJ289784.1 2 20010310 303 Pseudomonas putida plasmid pPP81 FJ948173.1 1 20090830 303 Pseudomonas putida plasmid pW2 AJ344068.1 5 20050415 303 Pseudomonas putida plasmid pWW0 AF273219.1 2 20031004 303 Pseudomonas putida plasmid pYQ39 AB237655.1 8 20101223 303 Pseudomonas putida strain G7 plasmid NAH7 AY208917.2 7 20120528 231023 Pseudomonas putida ND6 plasmid pND6-1 AB088420.3 22 20140902 53412 Pseudomonas resinovorans plasmid pCAR1 AP013069.1 1 20130811 1245471 Pseudomonas resinovorans NBRC 106553 plasmid pCAR1.3 CP000059.1 11 20140515 264730 Pseudomonas savastanoi pv. phaseolicola 1448A large plasmid CP000060.1 8 20140515 264730 Pseudomonas savastanoi pv. phaseolicola 1448A small plasmid U66917.2 10 20050418 47660 Pseudomonas sp. ADP atrazine catabolic plasmid pADP-1 DQ126685.1 2 20060617 341029 Pseudomonas sp. CT14 plasmid pCT14 AY951984.1 2 20051118 115714 Pseudomonas sp. S-47 plasmid p47L AY951985.1 2 20051118 115714 Pseudomonas sp. S-47 plasmid p47S AJ421512.3 6 20061114 180590 Pseudomonas sp. SLT2001 plasmid pQBR55 AY342395.1 4 20070823 321 Pseudomonas syringae pv. syringae plasmid pPSR1 AY603979.1 3 20050416 59511 Pseudomonas syringae pv. maculicola strain ES4326 plasmid pPMA4326A AY603980.1 2 20040721 59511 Pseudomonas syringae pv. maculicola strain ES4326 plasmid pPMA4326B AY603982.1 3 20061114 59511 Pseudomonas syringae pv. maculicola strain ES4326 plasmid pPMA4326C AY603981.1 2 20040721 59511 Pseudomonas syringae pv. maculicola strain ES4326 plasmid pPMA4326D AY603983.1 2 20040721 59511 Pseudomonas syringae pv. maculicola strain ES4326 plasmid pPMA4326E AF359557.1 3 20101021 698750 Pseudomonas syringae pv. maculicola str. M6 plasmid pFKN AE016855.1 15 20140515 223283 Pseudomonas syringae pv. tomato str. DC3000 plasmid pDC3000A AE016854.1 13 20140515 223283 Pseudomonas syringae pv. tomato str. DC3000 plasmid pDC3000B CP000324.1 6 20140515 335284 Psychrobacter cryohalolentis K5 plasmid 1 CP000714.1 5 20140515 349106 Psychrobacter sp. PRwf-1 plasmid pRWF101 CP000715.1 5 20140515 349106 Psychrobacter sp. PRwf-1 plasmid pRWF102 U49503.1 7 20130802 272844 Pyrococcus abyssi GE5 plasmid pGT5 GU056178.1 2 20100907 758582 Pyrococcus sp. 12/1 plasmid pP12-1 AF393813.1 3 20050415 165215 Pyrococcus sp. JT1 plasmid pRT1 FJ956744.1 1 20090603 2785 Pyropia tenera plasmid pPT4-NU AM167518.1 3 20061114 360016 Rahnella sp. 'WMR15' cryptic plasmid pHW15 AF144733.1 3 20030331 329 Ralstonia pickettii cryptic plasmid pMBCP CP001646.1 2 20131212 428406 Ralstonia pickettii 12D plasmid pRp12D01 CP001647.1 2 20131212 428406 Ralstonia pickettii 12D plasmid pRp12D02 CP001648.1 2 20131212 428406 Ralstonia pickettii 12D plasmid pRp12D03 CP001070.1 4 20140515 402626 Ralstonia pickettii 12J plasmid pRPIC01 AB015669.1 2 20050414 305 Ralstonia solanacearum plasmid pJTPS1 FP885907.1 2 20130515 859656 Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp FP885896.1 3 20150227 859655 Ralstonia solanacearum CMR15 plasmid CMR15_mp FP885893.1 3 20150227 859655 Ralstonia solanacearum CMR15 plasmid pRSC35 AL646053.1 9 20150227 267608 Ralstonia solanacearum GMI1000 megaplasmid FP885890.1 2 20130515 859657 Ralstonia solanacearum PSI07 plasmid pRSI13 CP000134.1 8 20150122 347834 Rhizobium etli CFN 42 plasmid p42a CP000135.1 8 20150122 347834 Rhizobium etli CFN 42 plasmid p42b CP000136.1 7 20150122 347834 Rhizobium etli CFN 42 plasmid p42c CP000137.1 9 20150122 347834 Rhizobium etli CFN 42 plasmid p42e CP000138.1 10 20150122 347834 Rhizobium etli CFN 42 plasmid p42f U80928.5 17 20150122 347834 Rhizobium etli CFN 42 symbiotic plasmid p42d CP001075.1 4 20140515 491916 Rhizobium etli CIAT 652 plasmid pA CP001076.1 4 20140515 491916 Rhizobium etli CIAT 652 plasmid pB CP001077.1 5 20140515 491916 Rhizobium etli CIAT 652 plasmid pC CP001623.1 4 20131212 395491 Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132501 CP001624.1 3 20131212 395491 Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132502 CP001625.1 3 20131212 395491 Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132503 CP001626.1 4 20131212 395491 Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132504 CP001627.1 3 20131212 395491 Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132505 CP001192.1 5 20131212 395492 Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201 CP001193.1 3 20131212 395492 Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202 CP001195.1 3 20131212 395492 Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG203 CP001194.1 3 20131212 395492 Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG204 AM236081.1 9 20150206 216596 Rhizobium leguminosarum bv. viciae 3841 plasmid pRL7 AM236082.1 9 20150206 216596 Rhizobium leguminosarum bv. viciae 3841 plasmid pRL8 AM236083.1 8 20150206 216596 Rhizobium leguminosarum bv. viciae 3841 plasmid pRL9 AM236084.1 9 20150206 216596 Rhizobium leguminosarum bv. viciae 3841 plasmid pRL10 AM236085.1 8 20150206 216596 Rhizobium leguminosarum bv. viciae 3841 plasmid pRL11 AM236086.1 9 20150206 216596 Rhizobium leguminosarum bv. viciae 3841 plasmid pRL12 HG518324.1 3 20150227 424182 Rhizobium sp. IRBG74 plasmid IRBL74_p HG916853.1 1 20140207 348824 Rhizobium sp. LPU83 plasmid pLPU83a HG916854.1 1 20140207 348824 Rhizobium sp. LPU83 plasmid pLPU83c HG916855.1 1 20140207 348824 Rhizobium sp. LPU83 plasmid pLPU83d FO082821.1 6 20150307 1125847 Rhizobium sp. NT-26 plasmid NT26_p1 FO082822.1 6 20150307 1125847 Rhizobium sp. NT-26plasmid NT26_p2 AB082959.1 5 20061114 1075 Rhodobacter blasticus plasmid pMG160 CP001313.1 6 20140515 272942 Rhodobacter capsulatus SB 1003 plasmid pRCB133 CP000145.2 9 20150215 272943 Rhodobacter sphaeroides 2.4.1 plasmid B CP000146.1 9 20150215 272943 Rhodobacter sphaeroides 2.4.1 plasmid C CP000147.2 9 20150215 272943 Rhodobacter sphaeroides 2.4.1 plasmid D CP000662.1 6 20150211 349102 Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01 CP000663.1 6 20150211 349102 Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA02 CP000664.1 6 20150211 349102 Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA03 CP000665.1 6 20150211 349102 Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA04 CP000666.1 6 20150211 349102 Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA05 CP000579.1 5 20140515 349101 Rhodobacter sphaeroides ATCC 17029 plasmid pRSPH01 CP001152.1 4 20140515 557760 Rhodobacter sphaeroides KD131 plasmid pRSKD131A CP001153.1 4 20140515 557760 Rhodobacter sphaeroides KD131 plasmid pRSKD131B DQ629589.1 1 20060625 191292 Rhodococcus aetherivorans strain I24 plasmid pRA1 AP001204.1 4 20051125 43767 Rhodococcus equi plasmid pREAT701 HM114217.1 2 20100909 43767 Rhodococcus equi plasmid pVAPAMBE116 strain MBE116 AM947677.1 2 20080904 43767 Rhodococcus equi vapA-type virulence plasmid pVAPA1037 strain 103S AM947676.1 2 20080904 43767 Rhodococcus equi vapB-type virulence plasmid pVAPB1593 strain PAM1593 AF116907.2 6 20050415 43767 Rhodococcus equi virulence plasmid AY223810.1 3 20050416 1833 Rhodococcus erythropolis linear plasmid pBD2 AF015088.1 4 20050415 1833 Rhodococcus erythropolis plasmid pFAJ2600 AB127588.1 1 20040907 1833 Rhodococcus erythropolis plasmid pRE8424 AP008932.1 4 20090401 234621 Rhodococcus erythropolis PR4 plasmid pREC1 AP008933.1 5 20090401 234621 Rhodococcus erythropolis PR4 plasmid pREC2 AP008931.1 8 20101223 234621 Rhodococcus erythropolis PR4 plasmid pREL1 CP000432.1 7 20140515 101510 Rhodococcus jostii RHA1 plasmid pRHL1 CP000433.1 7 20140515 101510 Rhodococcus jostii RHA1 plasmid pRHL2 CP000434.1 3 20140204 101510 Rhodococcus jostii RHA1 plasmid pRHL3 AP011118.1 1 20090402 632772 Rhodococcus opacus B4 plasmid pKNR AP011119.1 1 20090402 632772 Rhodococcus opacus B4 plasmid pKNR01 AP011120.1 1 20090402 632772 Rhodococcus opacus B4 plasmid pKNR02 AP011116.1 1 20090402 632772 Rhodococcus opacus B4 plasmid pROB01 AP011117.1 2 20121101 632772 Rhodococcus opacus B4 plasmid pROB02 AB266604.1 2 20070202 1829 Rhodococcus rhodochrous plasmid pNC500 AY297818.1 3 20040527 233067 Rhodococcus sp. B264-1 plasmid pB264 DQ888171.1 1 20060924 402236 Rhodococcus sp. NS1 plasmid pNSL1 CP000268.1 6 20140515 338969 Rhodoferax ferrireducens T118 plasmid1 BX571964.1 4 20150227 1076 Rhodopseudomonas palustris CGA009 plasmid pRPA DQ318958.1 1 20060102 1076 Rhodopseudomonas palustris plasmid pRPSZY CP000231.1 7 20140515 269796 Rhodospirillum rubrum ATCC 11170 plasmid U10426.1 2 19990706 29549 Rhodothermus marinus R-21 plasmid pRM21 CP001808.1 3 20131216 518766 Rhodothermus marinus DSM 4252 plasmid pRMAR01 AP014801.1 1 20150402 35806 Rhodovulum sulfidophilum plasmid Plasmid1 DNA strain: DSM 2351 AP014802.1 1 20150402 35806 Rhodovulum sulfidophilum plasmid Plasmid2 DNA strain: DSM 2351 AP014803.1 1 20150402 35806 Rhodovulum sulfidophilum plasmid Plasmid3 DNA strain: DSM 2351 CP001613.1 4 20140515 347255 Rickettsia africae ESF-5 plasmid pRAF CM000771.1 2 20091004 444612 Rickettsia endosymbiont of Ixodes scapularis plasmid pREIS1 CM000772.1 2 20091004 444612 Rickettsia endosymbiont of Ixodes scapularis plasmid pREIS2 CP000054.1 6 20140515 315456 Rickettsia felis URRWXCal2 plasmid pRF CP000055.1 6 20140515 315456 Rickettsia felis URRWXCal2 plasmid pRFdelta CP000684.1 5 20140515 416276 Rickettsia massiliae MTU5 plasmid pRMA CP003320.1 4 20140515 1105112 Rickettsia massiliae str. AZT80 plasmid pRMB EF564599.1 2 20070801 109232 Rickettsia monacensis plasmid pRM CP001228.1 5 20140515 562019 Rickettsia peacockii str. Rustic plasmid pRPR AF048718.1 2 20050415 34085 Riemerella anatipestifer plasmid pCFC1 AF082180.1 4 20050415 34085 Riemerella anatipestifer plasmid pCFC2 CP000464.1 7 20140515 375451 Roseobacter denitrificans OCh 114 plasmid pTB1 CP000465.1 7 20140515 375451 Roseobacter denitrificans OCh 114 plasmid pTB2 CP000466.1 7 20140515 375451 Roseobacter denitrificans OCh 114 plasmid pTB3 CP000467.1 7 20140515 375451 Roseobacter denitrificans OCh 114 plasmid pTB4 CP000032.1 11 20140515 246200 Ruegeria pomeroyi DSS-3 plasmid megaplasmid AF416330.1 4 20070910 185588 Ruegeria sp. PR1b plasmid pSD20 AF416331.1 3 20050415 185588 Ruegeria sp. PR1b plasmid pSD25 CP000376.1 8 20140515 292414 Ruegeria sp. TM1040 mega plasmid CP000375.1 9 20140515 292414 Ruegeria sp. TM1040 plasmid U22411.1 5 20000304 1265 Ruminococcus flavefaciens R13e2 cryptic plasmid pBAW301 J01347.1 9 20061114 4932 Saccharomyces cerevisiae 2 micron circle plasmid CP000160.1 6 20140515 309807 Salinibacter ruber DSM 13855 plasmid pSR35 FP565810.1 4 20150227 761659 Salinibacter ruber M8 plasmid pSR11 FP565811.1 4 20150227 761659 Salinibacter ruber M8 plasmid pSR56 FP565812.1 4 20150227 761659 Salinibacter ruber M8 plasmid pSR61 FP565813.1 3 20150227 761659 Salinibacter ruber M8, plasmid pSR84 AM412236.1 3 20070524 28901 Salmonella enterica Paratyphi A IncH1 multiple drug resistance DQ017661.1 1 20050714 28901 Salmonella enterica plasmid pNF1358 AY048853.1 3 20050416 28901 Salmonella enterica plasmid pSFD10 FN428572.1 2 20100105 28901 Salmonella enterica plasmid pSGI15 FJ621587.1 2 20100213 28901 Salmonella enterica strain AM04528 plasmid pAM04528 AY517905.1 3 20080405 28901 Salmonella enterica strain OU7025 plasmid pOU1113 CP001137.1 5 20140515 454166 Salmonella enterica subsp. enterica serovar Agona str. SL483 plasmid AF025795.1 3 20000303 28142 Salmonella enterica subsp. enterica serovar Berta plasmid pBERT FJ228229.1 2 20090130 58097 Salmonella enterica subsp. enterica serovar Bovismorbificans plasmid p2007057 AM746674.1 2 20080320 149387 Salmonella enterica subsp. enterica serovar Brandenburg plasmid pUO-SbR3 AM746675.2 3 20081023 149387 Salmonella enterica subsp. enterica serovar Brandenburg plasmid pUO-SbR5 AB040415.1 3 20050414 119912 Salmonella enterica subsp. enterica serovar Choleraesuis 50k virulence plasmid AB076707.2 3 20050414 119912 Salmonella enterica subsp. enterica serovar Choleraesuis cryptic plasmid AB366440.1 1 20071114 119912 Salmonella enterica subsp. enterica serovar Choleraesuis plasmid pMAK1 EU219534.1 1 20071205 119912 Salmonella enterica subsp. enterica serovar Choleraesuis plasmid pOU7519 AY509004.1 9 20140515 321314 Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 plasmid pSC138 AY509003.1 10 20140515 321314 Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 plasmid pSCV50 HG428760.1 1 20130922 1401650 Salmonella enterica subsp. enterica serovar Derby str. T12 plasmid pST12 EF633507.1 2 20080401 98360 Salmonella enterica subsp. enterica serovar Dublin plasmid IncW pIE321 AB366441.1 1 20071114 98360 Salmonella enterica subsp. enterica serovar Dublin plasmid pMAK2 AB366442.1 1 20071114 98360 Salmonella enterica subsp. enterica serovar Dublin plasmid pMAK3 DQ115387.2 4 20090701 98360 Salmonella enterica subsp. enterica serovar Dublin plasmid pOU1114 DQ115388.2 3 20081019 98360 Salmonella enterica subsp. enterica serovar Dublin plasmid pOU1115 CP001143.1 5 20140515 439851 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 plasmid pCT02021853_74 AY178821.1 2 20040731 149539 Salmonella enterica subsp. enterica serovar Enteritidis plasmid pB AY079201.1 3 20050416 149539 Salmonella enterica subsp. enterica serovar Enteritidis plasmid pC AY079200.1 1 20020318 149539 Salmonella enterica subsp. enterica serovar Enteritidis plasmid pK AY079199.1 1 20020318 149539 Salmonella enterica subsp. enterica serovar Enteritidis plasmid pP EU219533.1 2 20091106 149539 Salmonella enterica subsp. enterica serovar Enteritidis plasmid pSE34 HM231165.1 1 20100719 149539 Salmonella enterica subsp. enterica serovar Enteritidis strain PVCM07-2008 plasmid pVCM04 CP001119.1 5 20140515 454169 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 plasmid pSL476_3 CP001118.1 5 20140515 454169 Salmonella enterica subsp. enterica serovar Heidelberg str. SL476 plasmid pSL476_91 CP002090.1 2 20110715 192955 Salmonella enterica subsp. enterica serovar Kentucky plasmid pCS0010A CP002089.1 2 20110715 192955 Salmonella enterica subsp. enterica serovar Kentucky plasmid pSSAP03302A CP001123.1 2 20090916 439842 Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188 plasmid pCVM29188_46 CP001121.1 2 20090916 439842 Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188 plasmid pCVM29188_101 CP001122.1 2 20090916 439842 Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188 plasmid pCVM29188_146 EU331425.1 2 20090329 108619 Salmonella enterica subsp. enterica serovar Newport plasmid pA172 GQ470395.1 1 20100407 108619 Salmonella enterica subsp. enterica serovar Newport strain SN11/00 plasmid pSN11/00Kan CP001112.1 5 20140515 423368 Salmonella enterica subsp. enterica serovar Newport str. SL254 plasmid pSL254_3 CP000604.1 6 20140515 423368 Salmonella enterica subsp. enterica serovar Newport str. SL254 plasmid pSN254 EF150947.1 2 20090325 54388 Salmonella enterica subsp. enterica serovar Paratyphi A plasmid pGY1 CP000858.1 5 20140515 476213 Salmonella enterica subsp. enterica serovar Paratyphi C str. RKS4594 plasmid pSPCV CP001126.1 5 20140515 439843 Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 plasmid pCVM19633_4 CP001125.1 5 20140515 439843 Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 plasmid pCVM19633_110 AM419040.1 6 20081023 90370 Salmonella enterica subsp. enterica serovar Typhi linear plasmid pBSSB1 AF250878.1 6 20061223 90370 Salmonella enterica subsp. enterica serovar Typhi plasmid AF105019.1 3 20050415 90370 Salmonella enterica subsp. enterica serovar Typhi plasmid R27 AL513383.1 8 20150206 220341 Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid pHCM1 AL513384.1 8 20150206 220341 Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid pHCM2 AP005147.1 13 20101223 90371 Salmonella enterica subsp. enterica serovar Typhimurium plasmid R64 X01654.1 3 20020707 90371 Salmonella enterica subsp. enterica serovar Typhimurium low copy number plasmid pSC101 L05392.1 6 20121101 90371 Salmonella enterica subsp. enterica serovar Typhimurium plasmid NTP16, DQ916413.1 2 20061006 90371 Salmonella enterica subsp. enterica serovar Typhimurium plasmid pAnkS AJ634602.1 4 20081023 90371 Salmonella enterica subsp. enterica serovar Typhimurium plasmid pFPTB1 FN432031.1 3 20091209 90371 Salmonella enterica subsp. enterica serovar Typhimurium plasmid pSLT-BT GQ379901.1 2 20101223 90371 Salmonella enterica subsp. enterica serovar Typhimurium plasmid pSRC15 EU715253.1 2 20081216 90371 Salmonella enterica subsp. enterica serovar Typhimurium plasmid pST728/06-2 AM746977.1 3 20081023 90371 Salmonella enterica subsp. enterica serovar Typhimurium plasmid pTPqnrS-1a AY333434.1 5 20070111 90371 Salmonella enterica subsp. enterica serovar Typhimurium plasmid pU302L AY333433.1 3 20070111 90371 Salmonella enterica subsp. enterica serovar Typhimurium plasmid pU302S AB576781.2 6 20131031 90371 Salmonella enterica subsp. enterica serovar Typhimurium plasmid pYT1 AY046276.1 9 20121101 90371 Salmonella enterica subsp. enterica serovar Typhimurium plasmid R46 CP001362.1 5 20140515 588858 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S unnamed plasmid HF937209.1 3 20150227 85569 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 plasmid pDT104 AP014566.1 1 20140627 996633 Salmonella enterica subsp. enterica serovar Typhimurium str. L-3553 plasmid pST3553 AE006471.1 10 20140701 99287 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 plasmid pSLT HE654725.1 3 20150227 216597 Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 plasmid pCol1B9_SL1344 HE654726.1 3 20150227 216597 Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 plasmid pRSF1010_SL1344 HE654724.1 3 20150227 216597 Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 plasmid pSLT_SL1344 HG428759.1 1 20140331 1401642 Salmonella enterica subsp. enterica serovar Typhimurium str. STM709 AP011958.1 1 20131013 718274 Salmonella enterica subsp. enterica serovar Typhimurium str. T000240 plasmid pSTMDT12_L AP011959.1 1 20131013 718274 Salmonella enterica subsp. enterica serovar Typhimurium str. T000240 plasmid pSTMDT12_S CP001149.1 1 20080911 465517 Salmonella enterica subsp. enterica serovar Virchow str. SL491 plasmid pSL491_3 CP001148.1 1 20080911 465517 Salmonella enterica subsp. enterica serovar Virchow str. SL491 plasmid pSL491_5 DQ268764.2 3 20090501 356621 Salmonella enterica subsp. enterica serovar Westhampton plasmid pWES-1 CP001740.1 5 20140515 526218 Sebaldella termitidis ATCC 33386 plasmid pSTERM01 CP001741.1 6 20140515 526218 Sebaldella termitidis ATCC 33386 plasmid pSTERMP2 Z49917.1 7 20061114 971 Selenomonas ruminantium plasmid pJJM1 AF141869.1 4 20030704 971 Selenomonas ruminantium plasmid pJW1 AB003192.1 5 20051123 971 Selenomonas ruminantium plasmid pONE429 AB003193.1 5 20051123 971 Selenomonas ruminantium plasmid pONE430 AF113972.1 1 19990819 971 Selenomonas ruminantium plasmid pSR1 AY572460.1 2 20050603 971 Selenomonas ruminantium plasmid pSRD191 DQ186900.1 1 20050922 971 Selenomonas ruminantium strain 19 plasmid pSRD192 AP012299.1 1 20120329 927704 Selenomonas ruminantium subsp. lactilytica TAM6421 plasmid pSRC1 AP012293.1 1 20120329 927704 Selenomonas ruminantium subsp. lactilytica TAM6421 plasmid pSRC2 AP012300.1 1 20120329 927704 Selenomonas ruminantium subsp. lactilytica TAM6421 plasmid pSRC3 AP012294.1 1 20120329 927704 Selenomonas ruminantium subsp. lactilytica TAM6421 plasmid pSRC4 AP012301.1 1 20120329 927704 Selenomonas ruminantium subsp. lactilytica TAM6421 plasmid pSRC5 AP012295.1 1 20120329 927704 Selenomonas ruminantium subsp. lactilytica TAM6421 plasmid pSRC6 AP012296.1 1 20120329 927704 Selenomonas ruminantium subsp. lactilytica TAM6421 plasmid pSRC7 AP012297.1 1 20120329 927704 Selenomonas ruminantium subsp. lactilytica TAM6421 plasmid pSRC8 AP012298.1 1 20120329 927704 Selenomonas ruminantium subsp. lactilytica TAM6421 plasmid pSRC9 M11320.1 2 20130131 2517 Sequencing vector pAA3.7X AF135182.4 7 20070814 42906 Serratia entomophila plasmid pADAP EU697813.1 3 20091006 615 Serratia marcescens plasmid pRK10 BX664015.1 6 20081023 615 Serratia marcescens plasmid R478 U59131.1 2 19990706 615 Serratia marcescens plasmid R478 AP013064.1 3 20141001 1334564 Serratia marcescens SM39 plasmid pSMC1 AP013065.1 3 20141001 1334564 Serratia marcescens SM39 plasmid pSMC2 CP000827.1 5 20140515 399741 Serratia proteamaculans 568 plasmid pSPRO01 CP000564.1 5 20140515 325240 Shewanella baltica OS155 plasmid pSbal01 CP000565.1 5 20140515 325240 Shewanella baltica OS155 plasmid pSbal02 CP000566.1 5 20140515 325240 Shewanella baltica OS155 plasmid pSbal03 CP000567.1 4 20140515 325240 Shewanella baltica OS155 plasmid pSbal04 CP000754.1 4 20140515 402882 Shewanella baltica OS185 plasmid pS18501 CP000892.1 2 20131212 399599 Shewanella baltica OS195 plasmid pS19501 CP000893.1 2 20131212 399599 Shewanella baltica OS195 plasmid pS19502 CP000894.1 2 20131212 399599 Shewanella baltica OS195 plasmid pS19503 CP001253.1 2 20131212 407976 Shewanella baltica OS223 plasmid pS22301 CP001254.1 2 20131212 407976 Shewanella baltica OS223 plasmid pS22302 CP001255.1 2 20131212 407976 Shewanella baltica OS223 plasmid pS22303 AE014300.1 8 20140515 211586 Shewanella oneidensis MR-1 megaplasmid FJ626843.1 2 20090624 592146 Shewanella sp. 33B plasmid pSFKW33 CP000470.1 5 20140515 94122 Shewanella sp. ANA-3 plasmid 1 CP000445.1 5 20140515 60481 Shewanella sp. MR-7 plasmid1 CP001058.1 4 20140515 344609 Shigella boydii CDC 3083-94 plasmid pBS512_2 CP001060.1 4 20140515 344609 Shigella boydii CDC 3083-94 plasmid pBS512_5 CP001061.1 4 20140515 344609 Shigella boydii CDC 3083-94 plasmid pBS512_7 CP001059.1 4 20140515 344609 Shigella boydii CDC 3083-94 plasmid pBS512_33 CP001062.1 4 20140515 344609 Shigella boydii CDC 3083-94 plasmid pBS512_211 CP000037.1 4 20140202 300268 Shigella boydii Sb227 plasmid pSB4_227 CP000035.1 3 20140202 300267 Shigella dysenteriae Sd197 plasmid pSD1_197 CP000640.1 5 20140515 300267 Shigella dysenteriae Sd197 plasmid pSD197_spA AY879342.1 2 20090924 623 Shigella flexneri plasmid pSF5 AY028316.1 1 20010509 42897 Shigella flexneri 2a plasmid p2457TS2 AF386526.1 11 20140807 198214 Shigella flexneri 2a str. 301 virulence plasmid pCP301 AP000342.1 14 20130214 1288825 Shigella flexneri 2b plasmid R100 AF348706.1 4 20070501 424718 Shigella flexneri 5a plasmid virulence plasmid pWR501 CP001384.1 5 20140515 591020 Shigella flexneri 2002017 plasmid pSFxv_1 CP001385.1 5 20140515 591020 Shigella flexneri 2002017 plasmid pSFxv_2 CP001386.1 5 20140515 591020 Shigella flexneri 2002017 plasmid pSFxv_3 CP001387.1 5 20140515 591020 Shigella flexneri 2002017 plasmid pSFxv_4 CP001388.1 5 20140515 591020 Shigella flexneri 2002017 plasmid pSFxv_5 AF282884.1 1 20010627 624 Shigella sonnei plasmid ColJs AB021078.1 13 20130214 624 Shigella sonnei plasmid P9 FN594520.1 1 20100107 624 Shigella sonnei plasmid pEG356 AF497970.1 2 20050415 624 Shigella sonnei plasmid pKKTET7 M38574.1 5 20121101 624 Shigella sonnei plasmid pKYM HE616529.1 3 20150227 216599 Shigella sonnei 53G plasmid A HE616530.1 3 20150227 216599 Shigella sonnei 53G plasmid B HE616531.1 3 20150227 216599 Shigella sonnei 53G plasmid C HE616532.1 3 20150227 216599 Shigella sonnei 53G plasmid E CP000039.1 7 20140515 300269 Shigella sonnei Ss046 plasmid pSS CP000641.1 5 20140515 300269 Shigella sonnei Ss046 plasmid pSS046_spA CP000642.1 5 20140515 300269 Shigella sonnei Ss046 plasmid pSS046_spB CP000643.1 5 20140515 300269 Shigella sonnei Ss046 plasmid pSS046_spC FN543094.1 6 20150227 693216 Siccibacter turicensis z3032 plasmid pCTU1 FN543095.1 6 20150227 693216 Siccibacter turicensis z3032 plasmid pCTU2 FN543096.1 6 20150227 693216 Siccibacter turicensis z3032 plasmid pCTU3 FR872581.1 3 20150227 331113 Simkania negevensis Z plasmid pSn HE616891.1 3 20150206 1117943 Sinorhizobium fredii HH103 plasmid pSfHH103a HE616892.1 3 20150206 1117943 Sinorhizobium fredii HH103 plasmid pSfHH103b HE616893.1 3 20150206 1117943 Sinorhizobium fredii HH103 plasmid pSfHH103c HE616899.1 3 20150206 1117943 Sinorhizobium fredii HH103 plasmid pSfHH103e U00090.2 4 20140131 394 Sinorhizobium fredii NGR234 plasmid pNGR234a CP000874.1 5 20140515 394 Sinorhizobium fredii NGR234 plasmid pNGR234b CP000739.1 5 20140515 366394 Sinorhizobium medicae WSM419 plasmid pSMED01 CP000740.1 6 20140515 366394 Sinorhizobium medicae WSM419 plasmid pSMED02 CP000741.1 5 20140515 366394 Sinorhizobium medicae WSM419 plasmid pSMED03 AF327371.1 4 20030704 382 Sinorhizobium meliloti plasmid pRm1132f DQ145546.1 3 20060516 382 Sinorhizobium meliloti plasmid pSmeSM11a EF066650.1 2 20070524 382 Sinorhizobium meliloti plasmid pSmeSM11b AE006469.1 10 20101119 266834 Sinorhizobium meliloti 1021 plasmid pSymA AL591985.1 7 20150307 266834 Sinorhizobium meliloti 1021 plasmid pSymB CP002784.1 3 20130425 693982 Sinorhizobium meliloti AK83 plasmid pSINME01 CP002785.1 3 20130425 693982 Sinorhizobium meliloti AK83 plasmid pSINME02 HE995406.1 2 20150227 1230587 Sinorhizobium meliloti Rm41 plasmid pRM41A HE995407.1 2 20150227 1230587 Sinorhizobium meliloti Rm41 plasmid pSYMA HE995408.1 2 20150227 1230587 Sinorhizobium meliloti Rm41 plasmid pSYMB AJ868433.1 4 20061114 63612 Sodalis glossinidius plasmid pSG1 from Glossina austeni AJ868434.1 3 20061114 63612 Sodalis glossinidius plasmid pSG1 from Glossina palpalis palpalis AJ868436.1 3 20051031 63612 Sodalis glossinidius plasmid pSG2 from Glossina austini AJ868435.1 2 20051014 63612 Sodalis glossinidius plasmid pSG2 from Glossina palpalis palpalis AJ868437.1 2 20051014 63612 Sodalis glossinidius plasmid pSG3 from Glossina palpalis palpalis AJ868439.1 2 20051014 63612 Sodalis glossinidius plasmid pSG4 from Glossina austini AJ868438.1 2 20051014 63612 Sodalis glossinidius plasmid pSG4 from Glossina palpalis palpalis AP008233.1 7 20081214 343509 Sodalis glossinidius str. 'morsitans' plasmid pSG1 AP008234.1 7 20081214 343509 Sodalis glossinidius str. 'morsitans' plasmid pSG2 AP008235.1 7 20081214 343509 Sodalis glossinidius str. 'morsitans' plasmid pSG3 AP012158.1 3 20120615 1002809 Solibacillus silvestris StLB046 plasmid pSSIL1 CP002800.1 3 20140516 690566 Sphingobium chlorophenolicum L-1 plasmid pSPHCH01 AP010805.1 4 20140704 452662 Sphingobium japonicum UT26S plasmid pCHQ1 AP010806.1 4 20140704 452662 Sphingobium japonicum UT26S plasmid pUT1 AP010807.1 3 20140704 452662 Sphingobium japonicum UT26S plasmid pUT2 AP012223.1 2 20120202 627192 Sphingobium sp. SYK-6 plasmid AY787146.1 2 20050416 121428 Sphingobium xenophagum plasmid pSx-Qyy AB265740.1 1 20060714 13690 Sphingobium yanoikuyae plasmid pYAN-1 AB265741.1 2 20080425 13690 Sphingobium yanoikuyae plasmid pYAN-2 AB231906.2 4 20100303 90322 Sphingomonas sp. A1 plasmid pA1 AB270530.1 7 20110121 164608 Sphingomonas sp. KA1 plasmid pCAR3 CP000700.1 6 20140515 392499 Sphingomonas wittichii RW1 plasmid pSWIT01 CP000701.1 6 20140515 392499 Sphingomonas wittichii RW1 plasmid pSWIT02 CP000357.1 8 20140515 317655 Sphingopyxis alaskensis RB2256 F plasmid AB534719.1 3 20150120 33050 Sphingopyxis macrogoltabida plasmid pSM103mini AJ972409.1 1 20050602 2133 Spiroplasma citri plasmid pBJS-O AJ969069.1 2 20060308 2133 Spiroplasma citri plasmid pSci1 AJ969070.1 2 20060308 2133 Spiroplasma citri plasmid pSci2 AJ969071.1 2 20060308 2133 Spiroplasma citri plasmid pSci3 AJ969072.1 2 20060308 2133 Spiroplasma citri plasmid pSci4 AJ969073.1 2 20060308 2133 Spiroplasma citri plasmid pSci5 AJ969074.1 2 20060308 2133 Spiroplasma citri plasmid pSci6 AJ966734.1 2 20080514 2133 Spiroplasma citri plasmid pSciA AY528560.1 3 20050301 47834 Spiroplasma kunkelii strain CR2-3x plasmid pSKU146 CP001770.1 5 20140515 504472 Spirosoma linguale DSM 74 plasmid pSLIN01 CP001771.1 5 20140515 504472 Spirosoma linguale DSM 74 plasmid pSLIN02 CP001772.1 5 20140515 504472 Spirosoma linguale DSM 74 plasmid pSLIN03 CP001773.1 5 20140515 504472 Spirosoma linguale DSM 74 plasmid pSLIN04 CP001774.1 5 20140515 504472 Spirosoma linguale DSM 74 plasmid pSLIN05 CP001775.1 5 20140515 504472 Spirosoma linguale DSM 74 plasmid pSLIN06 CP001776.1 5 20140515 504472 Spirosoma linguale DSM 74 plasmid pSLIN07 CP001777.1 5 20140515 504472 Spirosoma linguale DSM 74 plasmid pSLIN08 GU584223.1 4 20120420 1571 Sporosarcina ureae plasmid pSU1 strain DMV4 FM207042.1 3 20150227 1280 Staphylococcus aureus plasmid pGO1 AE017171.1 4 20100308 1280 Staphylococcus aureus plasmid pLW043 GQ900387.1 2 20091219 1280 Staphylococcus aureus plasmid pCM05 GQ900378.1 3 20111123 1280 Staphylococcus aureus plasmid pI258 GQ900446.1 2 20091230 1280 Staphylococcus aureus plasmid pSK62 GQ900447.1 2 20091230 1280 Staphylococcus aureus plasmid pSK67 GQ900444.1 2 20091230 1280 Staphylococcus aureus plasmid pSK76 GQ900448.1 2 20091230 1280 Staphylococcus aureus plasmid pSK156 GQ900398.1 2 20091203 1280 Staphylococcus aureus plasmid pWBG744 GQ900389.1 2 20091203 1280 Staphylococcus aureus plasmid pWBG745 GQ900390.1 2 20091203 1280 Staphylococcus aureus plasmid pWBG746 GQ900399.1 2 20091203 1280 Staphylococcus aureus plasmid pWBG747 GQ900391.1 2 20091203 1280 Staphylococcus aureus plasmid pWBG749 GQ900392.1 2 20091203 1280 Staphylococcus aureus plasmid pWBG750 GQ900393.1 3 20111123 1280 Staphylococcus aureus plasmid pWBG751 GQ900394.1 2 20091203 1280 Staphylococcus aureus plasmid pWBG752 GQ900395.1 2 20091203 1280 Staphylococcus aureus plasmid pWBG753 GQ900396.1 2 20091203 1280 Staphylococcus aureus plasmid pWBG754 GQ900397.1 2 20091203 1280 Staphylococcus aureus plasmid pWBG757 GQ900400.1 2 20091203 1280 Staphylococcus aureus plasmid pWBG758 GQ900401.1 2 20091203 1280 Staphylococcus aureus plasmid pWBG759 GQ900467.1 2 20091206 1280 Staphylococcus aureus plasmid pWBG763 GQ900468.1 2 20091206 1280 Staphylococcus aureus plasmid pWBG764 GQ900377.1 2 20091219 1280 Staphylococcus aureus plasmid SAP012A GQ900379.1 2 20091219 1280 Staphylococcus aureus plasmid SAP014A GQ900380.1 2 20091219 1280 Staphylococcus aureus plasmid SAP015A GQ900500.1 2 20091219 1280 Staphylococcus aureus plasmid SAP015B fragment GQ900501.1 2 20091219 1280 Staphylococcus aureus plasmid SAP015B fragment GQ900502.1 2 20091219 1280 Staphylococcus aureus plasmid SAP015B fragment GQ900382.1 2 20091219 1280 Staphylococcus aureus plasmid SAP017A GQ900385.1 2 20091219 1280 Staphylococcus aureus plasmid SAP019A GQ900388.1 2 20091219 1280 Staphylococcus aureus plasmid SAP027A GQ900403.1 2 20091219 1280 Staphylococcus aureus plasmid SAP046A GQ900404.1 2 20091219 1280 Staphylococcus aureus plasmid SAP046B GQ900405.1 2 20091219 1280 Staphylococcus aureus plasmid SAP047A GQ900406.1 2 20091219 1280 Staphylococcus aureus plasmid SAP048A GQ900407.1 2 20091219 1280 Staphylococcus aureus plasmid SAP049A GQ900408.1 2 20091219 1280 Staphylococcus aureus plasmid SAP049B GQ900409.1 2 20091219 1280 Staphylococcus aureus plasmid SAP050A GQ900410.1 2 20091219 1280 Staphylococcus aureus plasmid SAP051A GQ900411.1 2 20091219 1280 Staphylococcus aureus plasmid SAP051B GQ900412.1 2 20091219 1280 Staphylococcus aureus plasmid SAP052A GQ900413.1 2 20091219 1280 Staphylococcus aureus plasmid SAP053A GQ900414.1 2 20091209 1280 Staphylococcus aureus plasmid SAP055A GQ900415.1 2 20091209 1280 Staphylococcus aureus plasmid SAP057A GQ900416.1 2 20091209 1280 Staphylococcus aureus plasmid SAP060A GQ900417.1 2 20091209 1280 Staphylococcus aureus plasmid SAP060B GQ900418.1 2 20091209 1280 Staphylococcus aureus plasmid SAP063A GQ900419.1 2 20091209 1280 Staphylococcus aureus plasmid SAP064A GQ900420.1 2 20091209 1280 Staphylococcus aureus plasmid SAP065A GQ900510.1 2 20091209 1280 Staphylococcus aureus plasmid SAP067B replication and maintenance protein (SAP067B_001) gene GQ900421.1 2 20091209 1280 Staphylococcus aureus plasmid SAP068A GQ900422.1 2 20091209 1280 Staphylococcus aureus plasmid SAP069A GQ900423.1 2 20091209 1280 Staphylococcus aureus plasmid SAP070A GQ900424.1 2 20091209 1280 Staphylococcus aureus plasmid SAP072A GQ900425.1 2 20091209 1280 Staphylococcus aureus plasmid SAP073A GQ900426.1 2 20091209 1280 Staphylococcus aureus plasmid SAP074A GQ900427.1 2 20091209 1280 Staphylococcus aureus plasmid SAP076A GQ900511.1 2 20091209 1280 Staphylococcus aureus plasmid SAP076B replication and maintenance protein (SAP076B_001) gene GQ900428.1 2 20091209 1280 Staphylococcus aureus plasmid SAP077A GQ900429.1 2 20091209 1280 Staphylococcus aureus plasmid SAP077B GQ900430.1 2 20091209 1280 Staphylococcus aureus plasmid SAP078A GQ900431.1 3 20111123 1280 Staphylococcus aureus plasmid SAP078B GQ900432.1 3 20100826 1280 Staphylococcus aureus plasmid SAP079A GQ900433.1 3 20100826 1280 Staphylococcus aureus plasmid SAP080A GQ900434.1 3 20100826 1280 Staphylococcus aureus plasmid SAP082A GQ900436.1 2 20091230 1280 Staphylococcus aureus plasmid SAP084A GQ900437.1 2 20091230 1280 Staphylococcus aureus plasmid SAP085A GQ900438.1 3 20111123 1280 Staphylococcus aureus plasmid SAP085B GQ900439.1 2 20091230 1280 Staphylococcus aureus plasmid SAP087A GQ900440.1 2 20091230 1280 Staphylococcus aureus plasmid SAP089A GQ900441.1 2 20091230 1280 Staphylococcus aureus plasmid SAP093A GQ900442.1 2 20091230 1280 Staphylococcus aureus plasmid SAP093B GQ900443.1 2 20091230 1280 Staphylococcus aureus plasmid SAP094A GQ900445.1 2 20091230 1280 Staphylococcus aureus plasmid SAP095B GQ900449.1 2 20091230 1280 Staphylococcus aureus plasmid SAP099B GQ900450.2 2 20091230 1280 Staphylococcus aureus plasmid SAP104A GQ900451.2 2 20091230 1280 Staphylococcus aureus plasmid SAP104B U38429.1 5 20050417 1280 Staphylococcus aureus chloramphenicol resistance plasmid pKH7 AP003089.1 3 20070106 1280 Staphylococcus aureus E-1 plasmid EDINA AB254848.1 2 20061114 1280 Staphylococcus aureus IMCJ1308 plasmid pSA1308 AB255366.1 1 20060401 1280 Staphylococcus aureus IMCJ1379 plasmid pSA1379 AF128883.1 3 20061223 1280 Staphylococcus aureus plasmid U36911.1 7 20070210 1280 Staphylococcus aureus plasmid J3356::POX7;1 U36912.1 7 20070210 1280 Staphylococcus aureus plasmid J3356::POX7;3 U36910.1 7 20070112 1280 Staphylococcus aureus plasmid J3358 AY917098.1 2 20060216 1280 Staphylococcus aureus plasmid pBORa53 V01277.1 5 20050418 1280 Staphylococcus aureus plasmid pC194 X02166.1 8 20081023 1280 Staphylococcus aureus plasmid pC221 X02529.1 11 20081023 1280 Staphylococcus aureus plasmid pC221 AY355285.1 3 20061114 1280 Staphylococcus aureus plasmid pC223 V01278.1 8 20061114 1280 Staphylococcus aureus plasmid pE194 AF151117.1 2 20030703 1280 Staphylococcus aureus plasmid pKH3 EU168704.2 3 20080510 1280 Staphylococcus aureus plasmid pKH12 EU365621.1 2 20080830 1280 Staphylococcus aureus plasmid pKH16 EU365622.1 2 20080830 1280 Staphylococcus aureus plasmid pKH17 EU333812.1 2 20080510 1280 Staphylococcus aureus plasmid pKH18 EU350089.1 2 20080510 1280 Staphylococcus aureus plasmid pKH19 EU350090.1 2 20080510 1280 Staphylococcus aureus plasmid pKH20 EU350088.1 2 20080510 1280 Staphylococcus aureus plasmid pKH21 AP004832.1 7 20050416 1280 Staphylococcus aureus plasmid pMW2 M16217.1 9 20121101 1280 Staphylococcus aureus plasmid pNS1 AJ512814.1 4 20061114 1280 Staphylococcus aureus plasmid pNVH01 AF241888.2 6 20091107 1280 Staphylococcus aureus plasmid pRJ6 X06627.1 10 20010310 1280 Staphylococcus aureus plasmid pS194 GU565967.1 1 20100721 1280 Staphylococcus aureus plasmid pSK1 U96609.1 4 20061114 1280 Staphylococcus aureus plasmid pSK3 U96610.1 4 20061114 1280 Staphylococcus aureus plasmid pSK6 AF051917.1 5 20050415 1280 Staphylococcus aureus plasmid pSK41 V01282.1 4 20050418 1280 Staphylococcus aureus plasmid pSN2 J01764.1 9 20121101 1280 Staphylococcus aureus plasmid pT181 AB369999.1 1 20071205 1280 Staphylococcus aureus plasmid pTZ4 AB304512.1 3 20101223 1280 Staphylococcus aureus plasmid pTZ2162 AY373761.1 2 20050416 1280 Staphylococcus aureus plasmid pUB101 M19465.1 8 20121101 1280 Staphylococcus aureus plasmid pUB110 EU366902.1 2 20080129 1280 Staphylococcus aureus plasmid pV030-8 FJ207465.1 3 20090115 1280 Staphylococcus aureus plasmid pVGA DQ088624.1 1 20050704 1280 Staphylococcus aureus plasmid pWBG738 EF537646.1 2 20080420 1280 Staphylococcus aureus plasmid pWBG1773 CP002133.1 3 20101203 1280 Staphylococcus aureus strain 18805 plasmid p18805-P01 CP002134.1 3 20101203 1280 Staphylococcus aureus strain 18806 plasmid p18806-P03 CP002136.1 3 20101203 1280 Staphylococcus aureus strain 18807 plasmid p18807-P01 CP002135.1 3 20101203 1280 Staphylococcus aureus strain 18807 plasmid p18807-P03 CP002138.1 3 20101203 1280 Staphylococcus aureus strain 18808 plasmid p18808-P01 CP002137.1 3 20101203 1280 Staphylococcus aureus strain 18808 plasmid p18808-P03 CP002140.1 3 20101203 1280 Staphylococcus aureus strain 18809 plasmid p18809-P01 CP002139.1 3 20101203 1280 Staphylococcus aureus strain 18809 plasmid p18809-P03 CP002142.1 3 20101203 1280 Staphylococcus aureus strain 18810 plasmid p18810-P01 CP002141.1 3 20101203 1280 Staphylococcus aureus strain 18810 plasmid p18810-P03 CP002144.1 3 20101203 1280 Staphylococcus aureus strain 18811 plasmid p18811-P01 CP002143.1 3 20101203 1280 Staphylococcus aureus strain 18811 plasmid p18811-P03 CP002146.1 3 20101203 1280 Staphylococcus aureus strain 18813 plasmid p18809-P04 CP002145.1 3 20101203 1280 Staphylococcus aureus strain 18813 plasmid p18813-P03 CP002148.1 4 20111123 1280 Staphylococcus aureus strain 19321 plasmid p19321-P01 CP002147.1 3 20101203 1280 Staphylococcus aureus strain 19321 plasmid p19321-P03 GU562626.1 3 20120629 1280 Staphylococcus aureus strain E29 plasmid pDLK3 GU237136.1 2 20100427 1280 Staphylococcus aureus strain HUNSC491 plasmid pPR9 EU170347.1 2 20080311 1280 Staphylococcus aureus strain KH13 plasmid pKH13 EU164802.1 2 20080311 1280 Staphylococcus aureus strain KH28 plasmid pKH14 EU170348.1 2 20080311 1280 Staphylococcus aureus strain KH28 plasmid pKH15 CP002150.1 3 20101203 1280 Staphylococcus aureus strain LAC plasmid pLAC-P01 CP002149.1 3 20101203 1280 Staphylococcus aureus strain LAC plasmid pLAC-P03 M19652.1 12 20121101 1280 Staphylococcus aureus strain T48 plasmid pT48 U38428.1 3 20050417 1280 Staphylococcus aureus tetracycline resistance plasmid pKH6 AP003088.1 2 20050416 1280 Staphylococcus aureus TY4 plasmid ETB CP005289.1 4 20140515 1321369 Staphylococcus aureus Bmb9393 plasmid pBmb9393 HF937104.1 3 20150227 1305598 Staphylococcus aureus M1 plasmid pSK67-M1 CP000045.2 11 20140515 93062 Staphylococcus aureus subsp. aureus COL plasmid pT181 FR714928.1 3 20150227 889933 Staphylococcus aureus subsp. aureus ECT-R 2 plasmid pLUH01 FR714929.1 3 20150227 889933 Staphylococcus aureus subsp. aureus ECT-R 2 plasmid pLUH02 CP001784.1 4 20140516 681288 Staphylococcus aureus subsp. aureus ED98 plasmid pAVX CP001782.1 4 20140516 681288 Staphylococcus aureus subsp. aureus ED98 plasmid pAVY CP001783.1 4 20140516 681288 Staphylococcus aureus subsp. aureus ED98 plasmid pT181 CP000737.1 4 20140515 359787 Staphylococcus aureus subsp. aureus JH1 plasmid pSJH101 CP000704.1 5 20140515 359786 Staphylococcus aureus subsp. aureus JH9 plasmid pSJH901 CP002115.1 6 20140516 869816 Staphylococcus aureus subsp. aureus JKD6159 plasmid pSaa6159 FR821780.1 3 20150227 985006 Staphylococcus aureus subsp. aureus LGA251 plasmid pLGA251 FR821778.1 3 20150227 985002 Staphylococcus aureus subsp. aureus MSHR1132 plasmid pST75 BX571858.1 5 20150206 282459 Staphylococcus aureus subsp. aureus MSSA476 plasmid pSAS AP003367.1 13 20070519 158878 Staphylococcus aureus subsp. aureus Mu50 plasmid VRSAp AP003139.1 12 20080127 158879 Staphylococcus aureus subsp. aureus N315 plasmid pN315B HE579060.1 4 20150307 1074919 Staphylococcus aureus subsp. aureus ST228 plasmid pI1T1 isolate 10388 HE579062.1 4 20150307 1074919 Staphylococcus aureus subsp. aureus ST228 plasmid pI2T2 isolate 10497 HE579064.1 4 20150307 1074919 Staphylococcus aureus subsp. aureus ST228 plasmid pI3T3 isolate 15532 HE579066.1 4 20150227 1074919 Staphylococcus aureus subsp. aureus ST228 plasmid pI4T8 isolate 16035 HE579068.1 4 20150227 1074919 Staphylococcus aureus subsp. aureus ST228 plasmid pI5S5 isolate 16125 HE579070.1 4 20150307 1074919 Staphylococcus aureus subsp. aureus ST228 plasmid pI6T6, isolate 18341 HE579072.1 4 20150307 1074919 Staphylococcus aureus subsp. aureus ST228 plasmid pI7S6, isolate 18412 HE579074.1 4 20150227 1074919 Staphylococcus aureus subsp. aureus ST228 plasmid pI8T7, isolate 18583 AM990993.1 3 20150227 523796 Staphylococcus aureus subsp. aureus ST398 pS0385-1 plasmid AM990994.1 3 20150227 523796 Staphylococcus aureus subsp. aureus ST398 pS0385-2 plasmid AM990995.1 3 20150227 523796 Staphylococcus aureus subsp. aureus ST398 pS0385-3 plasmid FN377602.2 2 20100509 523796 Staphylococcus aureus subsp. aureus ST398 multiresistance plasmid pKKS825 FN390948.1 2 20120403 523796 Staphylococcus aureus subsp. aureus ST398 plasmid pKKS627, isolate 627 FN433597.1 3 20150227 663951 Staphylococcus aureus subsp. aureus TW20, plasmid pTW20_1 FN433598.1 3 20150227 663951 Staphylococcus aureus subsp. aureus TW20, plasmid pTW20_2 CP000256.1 8 20150211 451515 Staphylococcus aureus subsp. aureus USA300_FPR3757 plasmid pUSA01 CP000257.1 8 20150211 451515 Staphylococcus aureus subsp. aureus USA300_FPR3757 plasmid pUSA02 CP000258.1 9 20150211 451515 Staphylococcus aureus subsp. aureus USA300_FPR3757 plasmid pUSA03 CP000732.1 5 20150210 450394 Staphylococcus aureus subsp. aureus USA300_TCH959 plasmid pUSA300HOUMS CP001544.1 3 20131212 451516 Staphylococcus aureus subsp. aureus USA300_TCH1516 plasmid pUSA01-HOU CP000731.1 6 20140515 451516 Staphylococcus aureus subsp. aureus USA300_TCH1516 plasmid pUSA300HOUMR AM184099.1 2 20070328 46126 Staphylococcus chromogenes plasmid pLNU1 AM184102.1 2 20070328 46126 Staphylococcus chromogenes plasmid pLNU4 AM399080.1 3 20070328 46126 Staphylococcus chromogenes plasmid pLNU8 AM399082.1 3 20070328 46126 Staphylococcus chromogenes plasmid pLNU9 GQ900463.1 2 20091230 1282 Staphylococcus epidermidis plasmid pSK103 GQ900462.1 2 20091230 1282 Staphylococcus epidermidis plasmid pSK105 GQ900464.1 2 20091230 1282 Staphylococcus epidermidis plasmid pSK108 GQ900381.1 2 20091219 1282 Staphylococcus epidermidis plasmid SAP016A GQ900402.1 2 20091219 1282 Staphylococcus epidermidis plasmid SAP045A GQ900452.1 2 20091230 1282 Staphylococcus epidermidis plasmid SAP105A GQ900453.1 2 20091230 1282 Staphylococcus epidermidis plasmid SAP105B GQ900454.2 2 20091230 1282 Staphylococcus epidermidis plasmid SAP106A GQ900455.1 2 20091230 1282 Staphylococcus epidermidis plasmid SAP106B GQ900456.1 2 20091230 1282 Staphylococcus epidermidis plasmid SAP107A GQ900457.1 2 20091230 1282 Staphylococcus epidermidis plasmid SAP107B GQ900458.1 2 20091230 1282 Staphylococcus epidermidis plasmid SAP108A GQ900459.1 2 20091230 1282 Staphylococcus epidermidis plasmid SAP108B GQ900460.1 2 20091230 1282 Staphylococcus epidermidis plasmid SAP108C GQ900461.2 2 20091230 1282 Staphylococcus epidermidis plasmid SAP108D GQ900465.1 2 20091230 1282 Staphylococcus epidermidis plasmid SAP110A GQ900466.1 2 20091230 1282 Staphylococcus epidermidis plasmid SAP110B AY092027.1 2 20050726 1282 Staphylococcus epidermidis CH plasmid pSepCH AM399083.1 3 20070328 1282 Staphylococcus epidermidis plasmid pLNU6 M12730.1 6 20121101 1282 Staphylococcus epidermidis plasmid pNE131 U40259.1 8 20071101 1282 Staphylococcus epidermidis trimethoprim resistance plasmid pSK639 AE015930.1 9 20140515 176280 Staphylococcus epidermidis ATCC 12228 plasmid pSE-12228-01 AE015931.1 8 20140515 176280 Staphylococcus epidermidis ATCC 12228 plasmid pSE-12228-02 AE015932.1 9 20140515 176280 Staphylococcus epidermidis ATCC 12228 plasmid pSE-12228-03 AE015933.1 9 20140515 176280 Staphylococcus epidermidis ATCC 12228 plasmid pSE-12228-04 AE015934.1 9 20140515 176280 Staphylococcus epidermidis ATCC 12228 plasmid pSE-12228-05 AE015935.1 9 20140515 176280 Staphylococcus epidermidis ATCC 12228 plasmid pSE-12228-06 HG813246.1 2 20150227 1449752 Staphylococcus epidermidis PM221 plasmid 1 HG813245.1 2 20150227 1449752 Staphylococcus epidermidis PM221 plasmid 2 HG813244.1 2 20150227 1449752 Staphylococcus epidermidis PM221 plasmid 3 HG813243.1 2 20150227 1449752 Staphylococcus epidermidis PM221 plasmid 4 CP000028.1 10 20140515 176279 Staphylococcus epidermidis RP62A plasmid pSERP AM184101.1 2 20070328 1283 Staphylococcus haemolyticus plasmid pLNU3, AM399081.1 3 20070328 1283 Staphylococcus haemolyticus plasmid pLNU7 AP006717.1 3 20101223 279808 Staphylococcus haemolyticus JCSC1435 plasmid pSHaeA AP006718.1 3 20101223 279808 Staphylococcus haemolyticus JCSC1435 plasmid pSHaeB AP006719.1 3 20101223 279808 Staphylococcus haemolyticus JCSC1435 plasmid pSHaeC FN677368.1 2 20120927 1284 Staphylococcus hyicus plasmid pKKS966 AJ888003.1 3 20050804 42858 Staphylococcus lentus plasmid pSTE2 U74623.1 4 20050418 28035 Staphylococcus lugdunensis strain 995 cadmium resistance plasmid pLUG10 AM040731.1 4 20070302 45972 Staphylococcus pasteuri plasmid pSP187 AM159501.1 2 20060609 29385 Staphylococcus saprophyticus pSES22 plasmid, isolate 44 AP008935.1 6 20070519 342451 Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 plasmid pSSP1 AP008936.1 6 20070519 342451 Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 plasmid pSSP2 FR687301.1 1 20110413 881952 Staphylococcus saprophyticus subsp. saprophyticus MS1146 plasmid pSSAP1 EU602348.1 2 20090327 1296 Staphylococcus sciuri plasmid pC194-like AJ579365.1 3 20050415 1296 Staphylococcus sciuri plasmid pSCFS1 AF093750.2 4 20050419 147467 Staphylococcus sciuri subsp. sciuri plasmid pACK6 AM184100.1 2 20070328 1286 Staphylococcus simulans plasmid pLNU2 AM399079.1 3 20070328 1286 Staphylococcus simulans plasmid pLNU5 EU930825.1 2 20091006 1287 Staphylococcus simulans bv. staphylolyticus plasmid pACK4 GU228571.1 2 20100704 1287 Staphylococcus simulans bv. staphylolyticus strain NRRL B-2628 plasmid pACK1 GU228572.1 2 20100704 1287 Staphylococcus simulans bv. staphylolyticus strain NRRL B-2628 plasmid pACK3 GQ900376.1 2 20091219 373067 Staphylococcus sp. 693-2 plasmid SAP008A DQ390456.1 1 20060706 373067 Staphylococcus sp. 693-2 plasmid pLEW6932 GQ900386.1 2 20091219 678601 Staphylococcus sp. CDC3 plasmid SAP020A GQ900383.1 2 20091219 678600 Staphylococcus sp. CDC25 plasmid SAP018A GQ900384.1 2 20091219 678600 Staphylococcus sp. CDC25 plasmid SAP018B AB125341.3 6 20100310 1292 Staphylococcus warneri plasmid pPI-1 AB125342.1 4 20100303 1292 Staphylococcus warneri plasmid pPI-2 AM040730.1 5 20081023 1292 Staphylococcus warneri plasmid pSW49 AM040729.1 5 20081023 1292 Staphylococcus warneri plasmid pSW174 L09673.1 5 20121101 40324 Stenotrophomonas maltophilia plasmid pNKH43 EF489910.1 2 20120629 40324 Stenotrophomonas maltophilia plasmid pSH1 EF535851.1 1 20080312 40324 Stenotrophomonas maltophilia plasmid pSM76 CP001780.1 5 20150109 519441 Streptobacillus moniliformis DSM 12112 plasmid pSMON01 U83488.1 5 20050418 1311 Streptococcus agalactiae plasmid pGB354 X72021.1 8 19971208 1311 Streptococcus agalactiae plasmid pGB3631 M29725.1 5 20121101 1311 Streptococcus agalactiae plasmid pLS1 X15669.1 7 19990210 1311 Streptococcus agalactiae plasmid pMV158 DQ173493.1 1 20060901 119602 Streptococcus dysgalactiae subsp. equisimilis plasmid pSdyT132 AY907345.1 3 20080112 119602 Streptococcus dysgalactiae subsp. equisimilis plasmid pW2580 FR824044.1 3 20150227 990317 Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069 plasmid pSGG1, strain ATCC BAA-2069 HE613570.1 4 20150227 1116231 Streptococcus macedonicus ACA-DC 198 plasmid pSMA198 AF050494.1 1 20010702 1309 Streptococcus mutans strain LM7 plasmid pLM7 AF068250.1 2 20041204 1309 Streptococcus mutans strain UA140 plasmid pUA140 EU685104.1 1 20090501 1318 Streptococcus parasanguinis plasmid pFW213 AF047696.1 5 20000303 1313 Streptococcus pneumoniae plasmid pDP1 AF047385.1 4 20000303 1313 Streptococcus pneumoniae plasmid pSMB1 AM279674.1 2 20070612 1313 Streptococcus pneumoniae plasmid pSpnP1 AY995189.1 1 20080101 1314 Streptococcus pyogenes plasmid pDN281 X66468.1 13 20050418 1314 Streptococcus pyogenes plasmid pMD101 EU192194.2 3 20130207 1314 Streptococcus pyogenes plasmid pRW35 AY357120.1 4 20061114 1314 Streptococcus pyogenes plasmid pSM19035 AY648561.1 3 20050826 1314 Streptococcus pyogenes strain 71-724 plasmid pDN571 AB019522.1 3 20050414 1307 Streptococcus suis plasmid pSSU1 FM252033.1 3 20150227 568814 Streptococcus suis BM407 plasmid pBM407 AY033392.1 2 20050416 1308 Streptococcus thermophilus plasmid pER13 AF177167.1 3 20050415 1308 Streptococcus thermophilus plasmid pER35 AF177168.1 3 20050415 1308 Streptococcus thermophilus plasmid pER36 AY250830.1 2 20031010 1308 Streptococcus thermophilus plasmid pND103 AF295100.1 5 20050415 1308 Streptococcus thermophilus plasmid pSMQ172 AY312235.1 2 20061114 1308 Streptococcus thermophilus plasmid pSMQ173b AY312234.1 2 20061114 1308 Streptococcus thermophilus plasmid pSMQ308 DQ295022.1 3 20070828 1308 Streptococcus thermophilus plasmid pSMQ-316 AJ566638.1 4 20061114 1308 Streptococcus thermophilus plasmid pt38 AF022180.1 6 20030704 1308 Streptococcus thermophilus strain ST371 cryptic plasmid pER371 CP000420.1 7 20140515 322159 Streptococcus thermophilus LMD-9 plasmid 1 CP000421.1 8 20140515 322159 Streptococcus thermophilus LMD-9 plasmid 2 AB058947.1 2 20050414 68570 Streptomyces albulus plasmid pNO33 AP005645.1 8 20070519 227882 Streptomyces avermitilis MA-4680 = NBRC 14893 plasmid SAP1 FQ859184.1 3 20150227 1003195 Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT CP003229.1 6 20150118 1003195 Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT X54107.1 7 20050418 1901 Streptomyces clavuligerus linear plasmid pSCL AL589148.1 7 20150206 1902 Streptomyces coelicolor plasmid SCP1 AJ414671.1 3 20050415 1902 Streptomyces coelicolor plasmid 2 (SCP2*) AL645771.1 8 20150206 100226 Streptomyces coelicolor A3(2) plasmid SCP2 AB010724.1 2 19980923 1904 Streptomyces cyaneus plasmid pSA1.1 D14281.2 8 20110807 52258 Streptomyces flavovirens plasmid pSN22 X80774.2 5 20070110 35758 Streptomyces ghanaensis plasmid pSG5 CP003721.1 4 20140515 1203460 Streptomyces hygroscopicus subsp. jinggangensis TL01 plasmid pSHJGH1 CP003722.1 4 20140515 1203460 Streptomyces hygroscopicus subsp. jinggangensis TL01 plasmid pSHJGH2 AB093554.1 1 20021016 39478 Streptomyces laurentii plasmid pSLS X69872.1 7 19940509 1914 Streptomyces lavendulae miniplasmid pSLG33 M21778.1 7 20121101 1916 Streptomyces lividans plasmid pIJ101 AY225511.1 3 20061114 1916 Streptomyces lividans strain 1326 plasmid SLP2 AJ243257.1 1 19991202 68242 Streptomyces natalensis plasmid pSNA1 U23762.1 4 20000304 1923 Streptomyces phaeochromogenes plasmid pJV1 AB088224.2 8 20110329 1928 Streptomyces rochei plasmid pSLA2-L DQ322649.1 2 20060908 364102 Streptomyces sp. 44030 plasmid pRL1 DQ322650.2 3 20060908 364103 Streptomyces sp. 44414 plasmid pRL2 AF533985.1 2 20030305 211464 Streptomyces sp. EN27 plasmid pEN2701 AY943952.1 2 20080530 319318 Streptomyces sp. F11 plasmid pFP11 AY943953.1 2 20080530 319426 Streptomyces sp. FQ1 plasmid pFP1 DQ322651.1 2 20060908 349971 Streptomyces sp. FR1 plasmid pFRL1 EU372836.1 2 20110805 405041 Streptomyces sp. HK1 plasmid pSHK1 GQ983381.1 3 20100630 682410 Streptomyces sp. W9 plasmid pCQ3 GQ984145.1 1 20091019 682314 Streptomyces sp. x3 plasmid pTSC2 GU226194.2 2 20110420 701045 Streptomyces sp. Y27 plasmid pWTY27 GQ919031.1 2 20100630 683081 Streptomyces sp. ZL12 plasmid pZL12 AM087403.1 2 20060502 54571 Streptomyces venezuelae plasmid pSVH1 AY211023.1 2 20050416 1935 Streptomyces violaceoruber strain SANK95570 plasmid pSV2 CP001815.1 5 20150118 479432 Streptosporangium roseum DSM 43021 plasmid pSROS01 AJ748322.1 2 20050415 43080 Sulfolobus islandicus plasmid pARN3 AJ748323.1 2 20130528 43080 Sulfolobus islandicus plasmid pARN4 AJ294536.1 2 20061114 43080 Sulfolobus islandicus plasmid pHEN7 AJ748324.1 2 20050415 43080 Sulfolobus islandicus plasmid pHVE14 AF233440.1 2 20050415 43080 Sulfolobus islandicus plasmid pING1 AJ748321.1 1 20041109 43080 Sulfolobus islandicus plasmid pKEF9 U36383.1 1 20100823 43080 Sulfolobus islandicus plasmid pRN1 U93082.1 5 20030523 43080 Sulfolobus islandicus plasmid pRN2 DQ335583.1 1 20060701 43080 Sulfolobus islandicus plasmid pSOG1 DQ335584.1 1 20060701 43080 Sulfolobus islandicus plasmid pSOG2 EU030940.1 2 20080227 43080 Sulfolobus islandicus plasmid pXZ1 CP001732.1 4 20140515 425944 Sulfolobus islandicus L.D.8.5 plasmid pLD8501 CP001405.1 5 20140515 419942 Sulfolobus islandicus Y.N.15.51 plasmid pYN01 AJ862826.1 3 20050415 299422 Sulfolobus neozealandicus plasmid pORA1 AY591755.1 3 20060531 2287 Sulfolobus solfataricus plasmid pIT3 DQ183185.1 2 20070615 2287 Sulfolobus solfataricus plasmid pSSVi AJ010405.1 7 20081023 84600 Sulfolobus sp. NOB8H2 conjugative plasmid pNOB8 AY517480.1 2 20050416 207809 Sulfolobus tengchongensis plasmid pTC AP013067.1 2 20140515 1163617 Sulfuricella denitrificans skB26 plasmid pSCD CP000101.1 5 20140515 1140 Synechococcus elongatus PCC 7942 plasmid 1 AF441790.2 6 20080523 1140 Synechococcus elongatus PCC 7942 plasmid pANL S89470.1 7 20040901 1140 Synechococcus elongatus PCC 7942 plasmid pUH24 AB018669.1 1 19981116 1131 Synechococcus sp. (strain:MA4) plasmid pMA4 CP000952.1 2 20131212 32049 Synechococcus sp. PCC 7002 ATCC 27264 plasmid pAQ1 CP000953.1 2 20131212 32049 Synechococcus sp. PCC 7002 plasmid pAQ3 CP000954.1 2 20131212 32049 Synechococcus sp. PCC 7002 plasmid pAQ4 CP000955.1 2 20131212 32049 Synechococcus sp. PCC 7002 plasmid pAQ5 CP000956.1 2 20131212 32049 Synechococcus sp. PCC 7002 plasmid pAQ6 CP000957.1 2 20131212 32049 Synechococcus sp. PCC 7002 plasmid pAQ7 D13972.1 11 20051208 32049 Synechococcus sp. PCC 7002 plasmid pAQ1 AP004311.1 6 20101223 1148 Synechocystis sp. PCC 6803 plasmid pSYSA AP004312.1 6 20101223 1148 Synechocystis sp. PCC 6803 plasmid pSYSG AP004310.1 6 20101223 1148 Synechocystis sp. PCC 6803 plasmid pSYSM AP006585.1 7 20101223 1148 Synechocystis sp. PCC 6803 plasmid pSYSX L25424.1 5 20010213 1148 Synechocystis sp. PCC 6803 plasmid pCB2.4 AF022806.1 2 20010531 53336 Tatumella citrea plasmid pUCD5000 AF128889.1 2 20000303 53336 Tatumella citrea strain ATCC31623 plasmid pPZG500 AB362339.1 3 20080827 51669 Tetragenococcus halophilus plasmid pHDC AB250926.1 2 20060302 51669 Tetragenococcus halophilus plasmid pSKPB18 CP004389.1 1 20150113 1123366 Thalassospira xiamenensis M-5 = DSM 17429 plasmid D88538.1 2 19980206 107832 Thanatephorus cucumeris linear plasmid pRS64-2 CP001282.1 3 20131212 85643 Thauera sp. MZ1T plasmid pTha01 CP003185.1 6 20140828 1094508 Thermoanaerobacterium saccharolyticum JW/SL-YS485 plasmid pMU3262 L38403.1 3 20030703 1517 Thermoanaerobacterium thermosaccharolyticum plasmid pNB2 EF495263.2 3 20071029 195522 Thermococcus nautili strain 30-1 plasmid pTN1 GU056177.1 2 20100907 195522 Thermococcus nautili strain 30/1 plasmid pTN2 GU056179.1 2 20100907 758583 Thermococcus sp. 26/2 plasmid pT26-2 GQ254849.1 2 20110310 563043 Thermococcus sp. AMT11 plasmid pAMT11 CP000506.1 5 20140515 368408 Thermofilum pendens Hrk 5 plasmid pTPEN01 CP001276.1 6 20150109 309801 Thermomicrobium roseum DSM 5159 plasmid AB190359.1 2 20060908 2303 Thermoplasma acidophilum plasmid pTA1 AJ810485.1 3 20060301 93929 Thermotoga petrophila plasmid pRKU1 EF407946.1 1 20070618 446041 Thermus sp. 4C plasmid pL4C EF407947.1 1 20070618 446041 Thermus sp. 4C plasmid pS4C DQ058601.1 1 20050524 274 Thermus thermophilus plasmid pTF62 AB119193.1 3 20040501 274 Thermus thermophilus plasmid pTT8 AP008228.1 2 20070519 300852 Thermus thermophilus HB8 plasmid pTT8 AP008227.1 2 20070519 300852 Thermus thermophilus HB8 plasmid pTT27 AE017222.1 9 20140515 262724 Thermus thermophilus HB27 plasmid pTT27 CP001906.1 4 20140515 396595 Thioalkalivibrio sp. K90mix plasmid pTK9001 AP012274.1 3 20150213 1076588 Thiolapillus brandeum Hiromi1 plasmid pTBH10 AP012275.1 3 20150213 1076588 Thiolapillus brandeum Hiromi1 plasmid pTBH13 FP475957.1 5 20150227 426114 Thiomonas arsenitoxydans plasmid pTHI CP002022.1 4 20140515 75379 Thiomonas intermedia K12 plasmid pTINT01 CP002023.1 4 20140515 75379 Thiomonas intermedia K12 plasmid pTINT02 DQ119297.1 2 20061101 35770 Tomato big bud phytoplasma plasmid pTBBperi AF112856.1 2 20040109 158 Treponema denticola plasmid pTS1 CP002060.1 5 20140515 551115 'Nostoc azollae' 0708 plasmid pAzo01 CP002061.1 5 20140515 551115 'Nostoc azollae' 0708 plasmid pAzo02 U83788.1 3 20000304 1661 Trueperella pyogenes plasmid pAP1 AY255627.1 2 20050416 1661 Trueperella pyogenes plasmid pAP2 CP001967.1 4 20140515 521096 Tsukamurella paurometabola DSM 20162 plasmid pTpau01 AM261282.1 4 20130212 77133 Uncultured bacterium IncP-1 plasmid pKJK5 AJ863570.1 7 20130212 77133 Uncultured bacterium IncP-1beta multiresistance plasmid pB8 AJ564903.1 6 20081023 77133 Uncultured bacterium IncP-1beta multiresistance plasmid pB10 AM157767.1 5 20130212 77133 Uncultured bacterium IncP-1gamma plasmid QKH54 Z74787.1 15 20130212 77133 Uncultured bacterium IncQ-like plasmid pIE1107 AM048832.1 6 20081023 77133 Uncultured bacterium mercury resistance plasmid pTP6 AJ698325.1 5 20081023 77133 Uncultured bacterium multiresistance plasmid pRSB101 AJ639924.1 6 20130212 77133 Uncultured bacterium plasmid pB3 AJ431260.1 6 20070718 77133 Uncultured bacterium plasmid pB4 AJ271879.1 3 20051003 77133 Uncultured bacterium plasmid pIE1130 AJ297913.2 5 20130212 77133 uncultured bacterium plasmid pIPO2T AB244976.1 9 20130214 77133 Uncultured bacterium plasmid pLB1 DQ839391.1 2 20070317 77133 Uncultured bacterium plasmid pRSB105 AJ304453.1 9 20130212 77133 Uncultured bacterium plasmid pSB102 AJ744860.1 5 20081023 77133 uncultured bacterium plasmid pTB11 AM263037.1 1 20060612 77133 Uncultured bacterium plasmid pTRACA FN429765.1 2 20100316 77133 Uncultured bacterium plasmid pTRACA18 FN429766.1 2 20100316 77133 Uncultured bacterium plasmid pTRACA20 FN429767.1 2 20100316 77133 Uncultured bacterium plasmid pTRACA22 FN429768.1 2 20100316 77133 Uncultured bacterium plasmid pTRACA30 AM263036.1 2 20061114 77133 Uncultured bacterium plasmid pTRACA 17 FJ012881.1 2 20090410 558688 Uncultured bacterium HH1107 plasmid pHH1107 FJ012882.1 2 20090410 558689 Uncultured bacterium HHV35 plasmid pHHV35 FJ012880.1 2 20090410 558687 Uncultured bacterium HHV216 plasmid pHHV216 AJ293027.1 3 20061114 136143 Uncultured eubacterium pIE1115 plasmid pIE1115 AP009511.1 4 20081214 471821 Uncultured Termite group 1 bacterium phylotype Rs-D17 plasmid pTGRD1 AP009512.1 4 20081214 471821 Uncultured Termite group 1 bacterium phylotype Rs-D17 plasmid pTGRD2 AP009513.1 4 20081214 471821 Uncultured Termite group 1 bacterium phylotype Rs-D17 plasmid pTGRD3 CP000543.1 4 20140515 391735 Verminephrobacter eiseniae EF01-2 plasmid pVEIS01 GQ395338.1 1 20090831 663 Vibrio alginolyticus strain E259 plasmid pVAE259 AM238700.1 1 20070406 105260 Listonella anguillarum serovar O2 plasmid pLO2 AY312585.1 4 20110621 882102 Vibrio anguillarum 775 plasmid pJM1 CP000791.1 7 20140515 338187 Vibrio campbellii ATCC BAA-1116 plasmid pVIBHAR DQ787203.1 2 20140630 666 Vibrio cholerae plasmid pVCG1.1 DQ787204.1 2 20140630 666 Vibrio cholerae plasmid pVCG1.2 DQ787205.1 2 20140630 666 Vibrio cholerae plasmid pVCG4.1 AF052650.1 4 20030704 666 Vibrio cholerae strain O395P plasmid pTLC AY876057.1 3 20091002 666 Vibrio cholerae strain SIO plasmid pSIO1 EU574928.1 2 20090724 676 Vibrio fluvialis strain BD146 plasmid pBD146 EU156059.1 1 20080518 28173 Vibrio nigripulchritudo plasmid pSFn1 FP893246.1 1 20110218 28173 Vibrio nigripulchritudo plasmid VIBNI_pA AP000581.2 4 20030529 670 Vibrio parahaemolyticus plasmid pO3K6 D85144.1 7 20070915 670 Vibrio parahaemolyticus plasmid pSA19 GQ131302.1 1 20090623 670 Vibrio parahaemolyticus strain A5-5 plasmid pZY5 EU159455.1 1 20080518 62153 Vibrio shilonii plasmid pAK1 AF149757.1 3 20030703 65384 Vibrio sp. 41 cryptic plasmid pPS41 CP000756.1 2 20100308 452802 Vibrio sp. 0908 plasmid p0908 CP000757.1 2 20100308 452804 Vibrio sp. 09022 plasmid p09022A CP000755.1 2 20100308 452803 Vibrio sp. 23023 plasmid p23023 AB262966.1 2 20110406 203842 Vibrio sp. TC68 plasmid TC68 EU573358.1 3 20110707 52443 Vibrio tapetis plasmid pVT1 AM293860.1 2 20080304 672 Vibrio vulnificus plasmid pC4602-2 AM293859.1 2 20080304 672 Vibrio vulnificus plasmid pC4602-1 DQ288663.1 5 20090605 672 Vibrio vulnificus strain MP-4 plasmid pMP1 AM293858.1 3 20090416 672 Vibrio vulnificusplasmid plasmid pR99 AP005352.1 6 20070519 196600 Vibrio vulnificus YJ016 plasmid pYJ016 CP001929.1 4 20140515 716544 Waddlia chondrophila WSU 86-1044 plasmid pWc AY188776.1 5 20060325 137591 Weissella cibaria plasmid pKLCA AF546865.2 4 20060325 137591 Weissella cibaria plasmid pKLCB EU236595.3 4 20130417 137591 Weissella cibaria plasmid pKW2130 AB063523.1 6 20081213 36870 Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis plasmid pWb1 CP000782.1 4 20140515 78245 Xanthobacter autotrophicus Py2 plasmid pXAUT01 FP340279.1 2 20150227 29447 Xanthomonas albilineans str. GPE PC73 plasmid plasmI FP340278.1 2 20150227 29447 Xanthomonas albilineans str. GPE PC73 plasmid plasmII FP340277.1 2 20150227 29447 Xanthomonas albilineans str. GPE PC73 plasmid plasmIII AY780631.1 2 20060804 92830 Xanthomonas axonopodis pv. glycines plasmid pAG1 AY780633.1 2 20060804 92830 Xanthomonas axonopodis pv. glycines plasmid pXAG82 AY780632.1 2 20060804 92830 Xanthomonas axonopodis pv. glycines strain 8ra plasmid pXAG81 AE008924.1 10 20140515 190486 Xanthomonas axonopodis pv. citri str. 306 plasmid pXAC33 AE008925.1 11 20140515 190486 Xanthomonas axonopodis pv. citri str. 306 plasmid pXAC64 AY228335.1 4 20070421 346 Xanthomonas citri plasmid pXcB CP003779.1 6 20140515 1137651 Xanthomonas citri subsp. citri Aw12879 plasmid pXcaw19 CP003780.1 6 20140515 1137651 Xanthomonas citri subsp. citri Aw12879 plasmid pXcaw58 AM039948.1 3 20150227 456327 Xanthomonas euvesicatoria plasmid pXCV2 AM039949.1 4 20150227 456327 Xanthomonas euvesicatoria plasmid pXCV19 AM039950.1 4 20150227 456327 Xanthomonas euvesicatoria plasmid pXCV38 AM039951.1 4 20150227 456327 Xanthomonas euvesicatoria plasmid pXCV183 U78513.1 4 20030708 456327 Xanthomonas euvesicatoria plasmid pXV64 FO681495.1 3 20150307 366649 Xanthomonas fuscans subsp. fuscans str. 4834-R, plasmid pla FO681496.1 3 20150307 366649 Xanthomonas fuscans subsp. fuscans str. 4834-R, plasmid plb FO681497.1 3 20150307 366649 Xanthomonas fuscans subsp. fuscans str. 4834-R, plasmid plc FO818639.1 2 20150307 40576 Xenorhabdus bovienii str. CS03 plasmid XBC_p FO704549.1 2 20150307 351671 Xenorhabdus doucetiae str. FRM16 plasmid XD_p FN667743.1 3 20150227 406817 Xenorhabdus nematophila ATCC 19061 plasmid XNC1_p CP001822.1 3 20131216 446471 Xylanimonas cellulosilytica DSM 15894 plasmid pXCEL01 U71220.1 3 19971118 2371 Xylella fastidiosa plasmid pXF868 GU938457.1 3 20100627 2371 Xylella fastidiosa strain Riv11 plasmid pXF-RIV11 GU938458.1 3 20100627 2371 Xylella fastidiosa strain Riv16 plasmid pXF-RIV16 GU938459.1 3 20100627 2371 Xylella fastidiosa strain Riv19 plasmid pXF-RIV19 GU938460.1 3 20100627 2371 Xylella fastidiosa strain Riv25 plasmid pXF-RIV25 AE003850.3 14 20140515 160492 Xylella fastidiosa 9a5c plasmid pXF1.3 AE003851.1 15 20140515 160492 Xylella fastidiosa 9a5c plasmid pXF51 CP001012.1 6 20140515 405441 Xylella fastidiosa M23 plasmid pXFAS01 CP002166.1 6 20140515 788929 Xylella fastidiosa subsp. fastidiosa GB514 plasmid AE009443.1 9 20140515 183190 Xylella fastidiosa Temecula1 plasmid pXFPD1.3 AJ132618.1 5 20051003 630 Yersinia enterocolitica cryptic plasmid p29807 AM905950.1 2 20080918 630 Yersinia enterocolitica plasmid pYE854 AF102990.1 4 20050415 630 Yersinia enterocolitica plasmid pYVe227 AF336309.1 4 20050415 630 Yersinia enterocolitica plasmid pYVe8081 FJ696405.1 1 20090310 630 Yersinia enterocolitica strain 07-04449 plasmid pYe4449-1 FJ696406.1 1 20090310 630 Yersinia enterocolitica strain 07-04449 plasmid pYe4449-2 AY150843.2 3 20050416 630 Yersinia enterocolitica strain A127/90 plasmid pYVa127/90 AM286416.1 5 20150206 393305 Yersinia enterocolitica subsp. enterocolitica 8081 plasmid pYVe8081 CP009989.1 1 20150210 632 Yersinia pestis strain Nicholisk 41 plasmid 1 CP009990.1 1 20150210 632 Yersinia pestis strain Nicholisk 41 plasmid 2 CP009988.1 1 20150210 632 Yersinia pestis strain Nicholisk 41 plasmid 3 AF152923.1 3 20050415 632 Yersinia pestis CH971662 cryptic plasmid pYC AF053946.1 7 20111120 632 Yersinia pestis KIM 10 plasmid pCD1 strain KIM AF074612.1 6 20111120 632 Yersinia pestis KIM 10 plasmid pCD1 strain KIM5 AF053947.1 7 20111120 632 Yersinia pestis KIM 10 plasmid pMT1 AF053945.1 6 20111120 632 Yersinia pestis KIM 10 plasmid pPCP1 AJ698720.1 2 20050415 632 Yersinia pestis plasmid pG8786 CP000902.1 5 20140515 349746 Yersinia pestis Angola plasmid new_pCD CP000900.1 5 20140515 349746 Yersinia pestis Angola plasmid pMT-pPCP CP000311.1 6 20140515 360102 Yersinia pestis Antiqua plasmid pCD CP000309.1 6 20140515 360102 Yersinia pestis Antiqua plasmid pMT CP000310.1 6 20140515 360102 Yersinia pestis Antiqua plasmid pPCP AE017043.1 8 20140515 229193 Yersinia pestis biovar Microtus str. 91001 plasmid pCD1 AE017044.1 8 20140515 229193 Yersinia pestis biovar Microtus str. 91001 plasmid pCRY AE017045.1 9 20140515 229193 Yersinia pestis biovar Microtus str. 91001 plasmid pMT1 AE017046.1 9 20140515 229193 Yersinia pestis biovar Microtus str. 91001 plasmid pPCP1 CP000603.1 2 20150224 373665 Yersinia pestis biovar Orientalis str. IP275 plasmid pIP1202 CP000722.1 2 20091210 412420 Yersinia pestis CA88-4125 plasmid pCD1 CP000723.1 2 20091210 412420 Yersinia pestis CA88-4125 plasmid pMT1 AL117189.1 11 20150206 214092 Yersinia pestis CO92 plasmid pCD1 AL117211.1 13 20150206 214092 Yersinia pestis CO92 plasmid pMT1 AL109969.1 10 20150206 214092 Yersinia pestis CO92 plasmid pPCP1 CP001586.1 6 20150211 637382 Yersinia pestis D106004 plasmid pCD1 CP001587.1 6 20150211 637382 Yersinia pestis D106004 plasmid pMT1 CP001588.1 6 20150211 637382 Yersinia pestis D106004 plasmid pPCY1 CP001590.1 6 20150211 637385 Yersinia pestis D182038 plasmid pCD1 CP001591.1 6 20150211 637385 Yersinia pestis D182038 plasmid pMT1 CP001592.1 6 20150211 637385 Yersinia pestis D182038 plasmid pPCP1 AF074611.1 14 20140515 187410 Yersinia pestis KIM10+ plasmid pMT-1 CP000306.1 6 20140515 377628 Yersinia pestis Nepal516 plasmid pMT CP000307.1 6 20140515 377628 Yersinia pestis Nepal516 plasmid pPCP CP000669.1 5 20140515 386656 Yersinia pestis Pestoides F plasmid pCD CP000670.1 5 20140515 386656 Yersinia pestis Pestoides F plasmid pMT CP001594.1 6 20140515 637386 Yersinia pestis Z176003 plasmid pCD1 CP001595.1 6 20140515 637386 Yersinia pestis Z176003 plasmid pMT1 CP001596.1 6 20140515 637386 Yersinia pestis Z176003 plasmid pPCP1 FM178282.1 3 20120316 633 Yersinia pseudotuberculosis plasmid pGDT4 CP000718.1 6 20140515 349747 Yersinia pseudotuberculosis IP 31758 plasmid plasmid_59kb CP000719.1 6 20140515 349747 Yersinia pseudotuberculosis IP 31758 plasmid plasmid_153kb BX936400.1 4 20150227 273123 Yersinia pseudotuberculosis IP 32953 plasmid pYptb32953 BX936399.2 7 20150227 273123 Yersinia pseudotuberculosis IP 32953 pYV plasmid, CP001049.1 5 20140515 502801 Yersinia pseudotuberculosis PB1/+ plasmid pYPTS01 CP000602.1 2 20100308 29486 Yersinia ruckeri strain YR71 plasmid pYR1 M18274.1 8 20110313 4954 Zygosaccharomyces bailii plasmid pSB2 X02608.1 8 20081023 4957 Zygosaccharomyces bisporus plasmid pSB3 X02398.1 7 20081023 4956 Zygosaccharomyces rouxii plasmid pSR1 X14438.1 6 19950808 542 Zymomonas mobilis 2.7kb plasmid AJ009976.1 3 20010331 542 Zymomonas mobilis ATCC 10988 cryptic plasmid pZMO2 FN554922.1 1 20091031 542 Zymomonas mobilis cryptic plasmid pZMN1-1 AJ009975.1 4 20090707 542 Zymomonas mobilis cryptic plasmid pZMO1 AF030624.1 2 20000303 542 Zymomonas mobilis plasmid pZMO1 AY057845.1 2 20050416 542 Zymomonas mobilis strain ZM4 plasmid 1 EU709732.1 2 20080619 120045 Zymomonas mobilis subsp. mobilis plasmid pCP4.2 CP001723.1 4 20150211 622759 Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1001 CP001724.1 4 20150211 622759 Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1002 CP001725.1 4 20150211 622759 Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZA1003 CP001881.1 1 20100205 264203 Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 plasmid pZZM401 CP001882.1 1 20100205 264203 Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 plasmid pZZM402 CP001883.1 1 20100205 264203 Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 plasmid pZZM403 CP001884.1 1 20100205 264203 Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 plasmid pZZM404 CP001885.1 1 20100205 264203 Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 plasmid pZZM405 CP001105.1 2 20140131 515620 [Eubacterium] eligens ATCC 27750 unnamed 60kb plasmid CP001106.1 2 20140131 515620 [Eubacterium] eligens ATCC 27750 unnamed 626kb plasmid FR687372.1 1 20110904 749 [Pasteurella] aerogenes plasmid pCCK343 isolate B343