IHECRE00004636.6 LIVE IHEC harmonized v2.0 JSON  

Species Homo sapiens
Type Single donor
Status Partial
Project ENCODE
Description Reference epigenome for human gastrocnemius medialis (54 year old male)
Previous versions IHECRE00004636.5   IHECRE00004636.4   IHECRE00004636.3   IHECRE00004636.2   IHECRE00004636.1  

Metadata


Biomaterial type primary tissue
Tissue type gastrocnemius medialis
Biospecimen
    Broad label muscle
    Intermediate label muscle organ
    Curated label Muscle Skeletal Gastrocnemius
    Ontology curie UBERON:0011907
Biospecimen disease
    Broad label Healthy/None
    Ontology curie NCIM:C0549184
Donor
    Type Single donor
    ID ENCDO451RUA
    Age 54
    Age unit year
    Life stage adult
    Sex male
    Health status ontology curie NCIM:C0549184

Experimental data


Assay Type Experiment Type Archive Primary ID Secondary ID URL
ChIP-Seq ChIP-Seq Input ENCODE ENCSR126QXT None https://www.encodeproject.org/experiments/ENCSR126QXT
ChIP-Seq Histone H3K36me3 ENCODE ENCSR105YNJ None https://www.encodeproject.org/experiments/ENCSR105YNJ
ChIP-Seq Histone H3K4me1 ENCODE ENCSR161HZJ None https://www.encodeproject.org/experiments/ENCSR161HZJ
ATAC-seq Chromatin Accessibility ENCODE ENCSR308HPZ None https://www.encodeproject.org/experiments/ENCSR308HPZ
ChIP-Seq Histone H3K27me3 ENCODE ENCSR423LXQ None https://www.encodeproject.org/experiments/ENCSR423LXQ
miRNA-Seq smRNA-Seq ENCODE ENCSR491VSN None https://www.encodeproject.org/experiments/ENCSR491VSN
ChIP-Seq Histone H3K9me3 ENCODE ENCSR697RIW None https://www.encodeproject.org/experiments/ENCSR697RIW
ChIP-Seq ChIP-Seq Input ENCODE ENCSR897RRA None https://www.encodeproject.org/experiments/ENCSR897RRA
ChIP-Seq Histone H3K27ac ENCODE ENCSR948YYZ None https://www.encodeproject.org/experiments/ENCSR948YYZ
RNA-Seq total-RNA-Seq ENCODE ENCSR967JPI None https://www.encodeproject.org/experiments/ENCSR967JPI
ChIP-Seq Histone H3K4me3 ENCODE ENCSR972ETR None https://www.encodeproject.org/experiments/ENCSR972ETR
ChIP-Seq Transcription Factor ENCODE ENCSR998NQG None https://www.encodeproject.org/experiments/ENCSR998NQG
DNase-Hypersensitivity Chromatin Accessibility ENCODE ENCSR520BAD None https://www.encodeproject.org/experiments/ENCSR520BAD