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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Gasterosteus aculeatus and fru-miR-1

665 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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TXNL5 ENSGACT00000014525 Thioredoxin-like protein 5 (14 kDa thioredoxin-related protein) (TRP14) (Protein 42-9-9). [Source:Uniprot/SWISSPROT;Acc:Q9BRA2]
16.7931 -11.98 0.0038888 500 9 1 14 [+] picture button
GMPS ENSGACT00000009364 GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2) (Glutamine amidotransferase) (GMP synthetase). [Source:Uniprot/SWISSPROT;Acc:P49915]
17.1692 -11.97 0.00390535 114 3 5 5 [+] picture button
Q8IXV1_HUMAN (2 of 2) ENSGACT00000024987 GLT8D3 protein. [Source:Uniprot/SPTREMBL;Acc:Q8IXV1]
16.3878 -16.46 0.00390568 500 5 2 5 [+] picture button
CCT3 ENSGACT00000013579 T-complex protein 1 subunit gamma (TCP-1-gamma) (CCT-gamma) (hTRiC5). [Source:Uniprot/SWISSPROT;Acc:P49368]
17.3534 -14.1 0.00397398 500 4 1 5 [+] picture button
ENSGACT00000000583 NOT ANNOTATED
17.2829 -9.84 0.00400031 209 3 1 4 [+] picture button
NP_001005920.2 ENSGACT00000019669 Similar to C. Elegans protein F17C8.5. [Source:Uniprot/SPTREMBL;Acc:Q96S16]
16.7144 -10.82 0.00400031 317 5 1 11 [+] picture button
ENSGACT00000011867 NOT ANNOTATED
17.2237 -16.67 0.00407164 500 4 1 4 [+] picture button
C3orf58 ENSGACT00000004911 Uncharacterized protein C3orf58 precursor. [Source:Uniprot/SWISSPROT;Acc:Q8NDZ4]
16.9116 -14.56 0.00407502 500 7 2 10 [+] picture button
MMACHC ENSGACT00000019260 Methylmalonic aciduria and homocystinuria type C protein. [Source:Uniprot/SWISSPROT;Acc:Q9Y4U1]
16.764 -14.02 0.00408222 500 4 1 8 [+] picture button
CRSP3 ENSGACT00000017494 CRSP complex subunit 3 (Cofactor required for Sp1 transcriptional activation subunit 3) (Transcriptional coactivator CRSP130) (Vitamin D3 receptor-interacting protein complex 130 kDa component) (DRIP130) (Activator-recruited cofactor 130 kDa component) (A [Source:Uniprot/SWISSPROT;Acc:Q9ULK4]
16.764 -17.19 0.00408222 500 6 1 9 [+] picture button
ENSGACT00000011030 NOT ANNOTATED
16.8476 -14.01 0.00413676 424 3 1 5 [+] picture button
GAPDHS ENSGACT00000007887 Glyceraldehyde-3-phosphate dehydrogenase, testis-specific (EC 1.2.1.12) (Spermatogenic cell-specific glyceraldehyde 3-phosphate dehydrogenase 2) (GAPDH-2). [Source:Uniprot/SWISSPROT;Acc:O14556]
17.1939 -14.24 0.00414392 500 9 1 9 [+] picture button
PTPRA ENSGACT00000020332 Vacuolar protein sorting-associated protein 16 homolog (hVPS16). [Source:Uniprot/SWISSPROT;Acc:Q9H269]
16.764 -16.19 0.00426586 500 8 1 7 [+] picture button
SLC22A15 ENSGACT00000014709 solute carrier family 22 (organic cation transporter), member 15 [Source:RefSeq_peptide;Acc:NP_060890]
19.3431 -22.35 0.00426586 500 6 1 7 [+] picture button
ENSGACT00000006271 NOT ANNOTATED
16.764 -14.22 0.00426586 500 7 2 9 [+] picture button
SLC35D1 (2 of 2) ENSGACT00000021349 UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter (UDP- GlcA/UDP-GalNAc transporter) (Solute carrier family 35 member D1) (UDP-galactose transporter-related protein 7) (UGTrel7). [Source:Uniprot/SWISSPROT;Acc:Q9NTN3]
16.4416 -10.91 0.00426586 500 7 1 6 [+] picture button
KLHL6 ENSGACT00000005034 Kelch-like protein 6. [Source:Uniprot/SWISSPROT;Acc:Q8WZ60]
16.487 -13.61 0.00432612 173 4 3 7 [+] picture button
RBM39 (1 of 2) ENSGACT00000003678 RNA-binding protein 39 (RNA-binding motif protein 39) (RNA-binding region-containing protein 2) (Hepatocellular carcinoma protein 1) (Splicing factor HCC1). [Source:Uniprot/SWISSPROT;Acc:Q14498]
18.1615 -13.73 0.00437839 340 7 3 13 [+] picture button
Q96CK5_HUMAN ENSGACT00000012045 NOT ANNOTATED
16.4133 -9.41 0.0044619 549 8 1 7 [+] picture button
ELK3 ENSGACT00000025364 ETS domain-containing protein Elk-3 (ETS-related protein NET) (ETS- related protein ERP) (SRF accessory protein 2) (SAP-2). [Source:Uniprot/SWISSPROT;Acc:P41970]
16.764 -10.88 0.00455164 500 2 1 4 [+] picture button
PERP ENSGACT00000014017 p53 apoptosis effector related to PMP-22 (Keratinocytes-associated protein 1) (KCP-1) (P53-induced protein PIGPC1) (Transmembrane protein THW). [Source:Uniprot/SWISSPROT;Acc:Q96FX8]
19.7844 -20.22 0.00460599 219 3 2 7 [+] picture button
RGS6 (2 of 2) ENSGACT00000010635 Regulator of G-protein signaling 6 (RGS6) (S914). [Source:Uniprot/SWISSPROT;Acc:P49758]
16.8597 -14.97 0.00463799 653 3 1 3 [+] picture button
NLK ENSGACT00000006619 Serine/threonine kinase NLK (EC 2.7.11.24) (Nemo-like kinase) (Protein LAK1). [Source:Uniprot/SWISSPROT;Acc:Q9UBE8]
16.6792 -9.66 0.0047004 500 5 1 5 [+] picture button
MYC ENSGACT00000005889 Myc proto-oncogene protein (c-Myc) (Transcription factor p64). [Source:Uniprot/SWISSPROT;Acc:P01106]
16.6522 -16.05 0.004778 500 9 13 15 [+] picture button
NEIL3 ENSGACT00000021892 Endonuclease VIII-like 3 (Nei-like 3) (DNA glycosylase FPG2). [Source:Uniprot/SWISSPROT;Acc:Q8TAT5]
17.1692 -12.24 0.00479138 195 3 2 7 [+] picture button
GTF3C1 ENSGACT00000025847 General transcription factor 3C polypeptide 1 (Transcription factor IIIC-subunit alpha) (TF3C-alpha) (TFIIIC 220 kDa subunit) (TFIIIC220) (TFIIIC box B-binding subunit). [Source:Uniprot/SWISSPROT;Acc:Q12789]
16.3733 -13 0.00480023 111 2 1 3 [+] picture button
CACNA1C ENSGACT00000026077 Voltage-dependent L-type calcium channel subunit alpha-1C (Voltage- gated calcium channel subunit alpha Cav1.2) (Calcium channel, L type, alpha-1 polypeptide, isoform 1, cardiac muscle). [Source:Uniprot/SWISSPROT;Acc:Q13936]
17.4045 -15.25 0.00481738 500 6 1 9 [+] picture button
LTBP3 ENSGACT00000027440 Latent-transforming growth factor beta-binding protein 3 precursor (LTBP-3). [Source:Uniprot/SWISSPROT;Acc:Q9NS15]
17.5732 -16.57 0.00482687 500 4 2 5 [+] picture button
RNPC3 ENSGACT00000002673 RNA-binding region (RNP1, RRM) containing 3 [Source:RefSeq_peptide;Acc:NP_060089]
18.0375 -17.99 0.00483431 342 6 1 9 [+] picture button
ENSGACT00000010272 Homolog of Brachydanio rerio "Fibronectin 1a isoform 1. [Source:Uniprot/SPTREMBL;Acc:O93406]"Homolog of Brachydanio rerio "Fibronectin 1a isoform 1. [Source:Uniprot/SPTREMBL;Acc:O93406]" BY ORTHOLOGY TO:SINFRUT00000155995
17.5816 -13.02 0.00484705 500 5 2 5 [+] picture button
EFNB2 (2 of 2) ENSGACT00000020303 Ephrin-B2 precursor (EPH-related receptor tyrosine kinase ligand 5) (LERK-5) (HTK ligand) (HTK-L). [Source:Uniprot/SWISSPROT;Acc:P52799]
16.6565 -14.75 0.00487977 500 7 2 8 [+] picture button
THBS4 (2 of 2) ENSGACT00000013074 Thrombospondin-4 precursor. [Source:Uniprot/SWISSPROT;Acc:P35443]
16.6565 -17.24 0.00487977 500 6 1 7 [+] picture button
NP_060290.3 ENSGACT00000023093 HBE269. [Source:Uniprot/SPTREMBL;Acc:Q8NHD1]
16.6565 -17.33 0.00487977 500 3 1 3 [+] picture button
NEK2 ENSGACT00000013125 Serine/threonine-protein kinase Nek2 (EC 2.7.11.1) (NimA-related protein kinase 2) (NimA-like protein kinase 1) (HSPK 21). [Source:Uniprot/SWISSPROT;Acc:P51955]
17.4171 -10.66 0.00492042 500 5 1 6 [+] picture button
ELMO2 ENSGACT00000000535 Engulfment and cell motility protein 2 (CED-12 homolog A) (hCED-12A). [Source:Uniprot/SWISSPROT;Acc:Q96JJ3]
18.3123 -17.29 0.00494571 500 4 1 5 [+] picture button
PLCL2 ENSGACT00000017253 phospholipase C-like 2 [Source:RefSeq_peptide;Acc:NP_055999]
16.8802 -15.12 0.00497969 500 8 3 10 [+] picture button
Q8TBD9_HUMAN ENSGACT00000003532 VPRBP protein. [Source:Uniprot/SPTREMBL;Acc:Q8TBD9]
16.9611 -9.4 0.00498219 500 3 1 5 [+] picture button
C8orf59 ENSGACT00000006612 Uncharacterized protein C8orf59. [Source:Uniprot/SPTREMBL;Acc:Q8N0T1]
16.678 -14.82 0.00498703 566 6 2 6 [+] picture button
FAM117A (2 of 2) ENSGACT00000009401 Protein FAM117A (C/EBP-induced protein). [Source:Uniprot/SWISSPROT;Acc:Q9C073]
16.6928 -17.81 0.0050629 500 4 4 4 [+] picture button
LYRM1 ENSGACT00000011327 LYR motif-containing protein 1. [Source:Uniprot/SWISSPROT;Acc:O43325]
16.9111 -13.44 0.00506839 364 6 1 9 [+] picture button
LSS ENSGACT00000003424 Lanosterol synthase (EC 5.4.99.7) (Oxidosqualene--lanosterol cyclase) (2,3-epoxysqualene--lanosterol cyclase) (OSC). [Source:Uniprot/SWISSPROT;Acc:P48449]
17.6659 -11.49 0.00514555 489 4 1 5 [+] picture button
SCAMP4 ENSGACT00000003473 secretory carrier membrane protein 4 (SCAMP4), mRNA [Source:RefSeq_dna;Acc:NM_079834]
17.8386 -20.68 0.00520258 500 3 1 4 [+] picture button
C1orf149 ENSGACT00000003437 Uncharacterized protein C1orf149 (Sarcoma antigen NY-SAR-91). [Source:Uniprot/SWISSPROT;Acc:Q9HAF1]
16.7265 -13.23 0.00530777 500 3 2 4 [+] picture button
NP_001073865.1 (2 of 2) ENSGACT00000018703 similar to transmembrane protein 28 (LOC728215), mRNA [Source:RefSeq_dna;Acc:NM_001080396]
19.6049 -20.81 0.00540071 500 4 1 6 [+] picture button
PIGF ENSGACT00000003639 Phosphatidylinositol-glycan biosynthesis class F protein (PIG-F) (GPI11 homolog). [Source:Uniprot/SWISSPROT;Acc:Q07326]
16.6007 -12.95 0.00542907 94 3 1 7 [+] picture button
HDAC8 ENSGACT00000024832 Histone deacetylase 8 (HD8). [Source:Uniprot/SWISSPROT;Acc:Q9BY41]
16.5864 -14.91 0.00547924 500 5 1 8 [+] picture button
HSDL2 ENSGACT00000020408 hydroxysteroid dehydrogenase like 2 [Source:RefSeq_peptide;Acc:NP_115679]
16.6768 -12.14 0.00548651 326 5 1 8 [+] picture button
ENSGACT00000026723 CDNA FLJ90374 fis, clone NT2RP2004648, weakly similar to Mouse beta- galactosidase (BGAL) gene. [Source:Uniprot/SPTREMBL;Acc:Q8NCB3]CDNA FLJ90374 fis, clone NT2RP2004648, weakly similar to Mouse beta- galactosidase (BGAL) gene. [Source:Uniprot/SPTREMBL;Acc:Q8NCB3] BY ORTHOLOGY TO:SINFRUT00000163312
16.5778 -18.92 0.00555696 500 2 1 2 [+] picture button
KHSRP (1 of 2) ENSGACT00000025154 Far upstream element-binding protein 2 (FUSE-binding protein 2) (KH type-splicing regulatory protein) (KSRP) (p75). [Source:Uniprot/SWISSPROT;Acc:Q92945]
16.5778 -15.92 0.00555696 500 2 1 4 [+] picture button
ATP6V1C1 (1 of 2) ENSGACT00000006862 Vacuolar ATP synthase subunit C (EC 3.6.3.14) (V-ATPase C subunit) (Vacuolar proton pump C subunit). [Source:Uniprot/SWISSPROT;Acc:P21283]
17.1767 -19.38 0.00558234 645 2 1 3 [+] picture button

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