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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Gasterosteus aculeatus and fru-miR-1

665 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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TYW1 ENSGACT00000016809 tRNA wybutosine-synthesizing protein 1 homolog A (Radical S-adenosyl methionine and flavodoxin domain-containing protein 1). [Source:Uniprot/SWISSPROT;Acc:Q9NV66]
17.0576 -14.15 0.00249316 500 5 1 7 [+] picture button
DPP7 ENSGACT00000004364 Dipeptidyl-peptidase 2 precursor (EC 3.4.14.2) (Dipeptidyl-peptidase II) (DPP II) (Dipeptidyl aminopeptidase II) (Quiescent cell proline dipeptidase) (Dipeptidyl peptidase 7). [Source:Uniprot/SWISSPROT;Acc:Q9UHL4]
17.0555 -16.49 0.00250201 195 5 2 9 [+] picture button
RBM28 ENSGACT00000016724 RNA-binding protein 28 (RNA-binding motif protein 28). [Source:Uniprot/SWISSPROT;Acc:Q9NW13]
17.0555 -14.54 0.00250201 218 7 2 12 [+] picture button
WDSOF1 ENSGACT00000006456 WD repeats and SOF1 domain containing [Source:RefSeq_peptide;Acc:NP_056235]
17.0555 -13.18 0.00250201 275 6 1 8 [+] picture button
NAGK ENSGACT00000026307 N-acetylglucosamine kinase (EC 2.7.1.59) (GlcNAc kinase). [Source:Uniprot/SWISSPROT;Acc:Q9UJ70]
17.0555 -16.96 0.00250201 266 5 1 16 [+] picture button
KLHL4 ENSGACT00000023431 Kelch-like protein 4. [Source:Uniprot/SWISSPROT;Acc:Q9C0H6]
17.2427 -14.84 0.00276473 500 3 4 4 [+] picture button
ENSGACT00000016672 NOT ANNOTATED
16.8101 -19.81 0.00280472 362 10 1 12 [+] picture button
PLCXD1 (3 of 3) ENSGACT00000018331 phosphatidylinositol-specific phospholipase C, X domain containing 1 [Source:RefSeq_peptide;Acc:NP_060860]
16.9851 -14.02 0.00281778 330 5 1 8 [+] picture button
DENND4A ENSGACT00000006461 C-myc promoter-binding protein (DENN domain-containing protein 4A). [Source:Uniprot/SWISSPROT;Acc:Q7Z401]
17.6444 -13.82 0.00286273 365 7 2 13 [+] picture button
PPM1D (1 of 2) ENSGACT00000017951 Protein phosphatase 2C isoform delta (EC 3.1.3.16) (PP2C-delta) (p53- induced protein phosphatase 1) (Protein phosphatase magnesium- dependent 1 delta). [Source:Uniprot/SWISSPROT;Acc:O15297]
19.4505 -19.13 0.00289473 500 3 2 5 [+] picture button
WIF1 ENSGACT00000015613 Wnt inhibitory factor 1 precursor (WIF-1). [Source:Uniprot/SWISSPROT;Acc:Q9Y5W5]
17.4088 -15.49 0.00293123 500 3 1 5 [+] picture button
NP_598375.2 ENSGACT00000001542 DNA helicase HEL308 [Source:RefSeq_peptide;Acc:NP_598375]
16.956 -13.64 0.00295955 500 4 1 5 [+] picture button
INTS10 ENSGACT00000023769 Integrator complex subunit 10 (Int10). [Source:Uniprot/SWISSPROT;Acc:Q9NVR2]
17.1692 -12.03 0.00296927 284 9 1 12 [+] picture button
ENSGACT00000026756 clathrin, heavy polypeptide (Hc) [Source:RefSeq_peptide;Acc:NP_001005391]clathrin, heavy polypeptide (Hc) [Source:RefSeq_peptide;Acc:NP_001005391] BY ORTHOLOGY TO:ENSDART00000063849
17.9012 -14.25 0.00298111 500 5 3 8 [+] picture button
SLC12A1 ENSGACT00000022179 Solute carrier family 12 member 1 (Bumetanide-sensitive sodium- (potassium)-chloride cotransporter 2) (Kidney-specific Na-K-Cl symporter). [Source:Uniprot/SWISSPROT;Acc:Q13621]
18.2685 -16.7 0.00298534 500 5 1 10 [+] picture button
AHCYL1 (2 of 2) ENSGACT00000010487 Putative adenosylhomocysteinase 2 (EC 3.3.1.1) (S-adenosyl-L- homocysteine hydrolase 2) (AdoHcyase 2) (S-adenosylhomocysteine hydrolase-like 1) (DC-expressed AHCY-like molecule). [Source:Uniprot/SWISSPROT;Acc:O43865]
18.161 -17.21 0.00299001 500 8 2 8 [+] picture button
SYTL2 (2 of 2) ENSGACT00000026614 Synaptotagmin-like protein 2 (Exophilin-4). [Source:Uniprot/SWISSPROT;Acc:Q9HCH5]
16.764 -11.33 0.00299001 500 4 1 4 [+] picture button
UBAC1 ENSGACT00000018499 Ubiquitin-associated domain-containing protein 1 (E3 ubiquitin-protein ligase subunit KPC2) (Kip1 ubiquitination-promoting complex protein 2) (Glialblastoma cell differentiation-related protein 1). [Source:Uniprot/SWISSPROT;Acc:Q9BSL1]
16.7631 -13.27 0.00300862 500 7 9 7 [+] picture button
CPSF1 ENSGACT00000011619 Cleavage and polyadenylation specificity factor subunit 1 (Cleavage and polyadenylation specificity factor 160 kDa subunit) (CPSF 160 kDa subunit). [Source:Uniprot/SWISSPROT;Acc:Q10570]
16.9418 -10.78 0.00303116 137 1 1 2 [+] picture button
LOC645619 ENSGACT00000009518 Adenylate kinase isoenzyme 4, mitochondrial (EC 2.7.4.3) (Adenylate kinase 3-like 1) (ATP-AMP transphosphorylase). [Source:Uniprot/SWISSPROT;Acc:Q9WUS0]Adenylate kinase isoenzyme 4, mitochondrial (EC 2.7.4.3) (Adenylate kinase 3-like 1) (ATP-AMP transphosphorylase). [Source:Uniprot/SWISSPROT;Acc:Q9WUS0] BY ORTHOLOGY TO:ENSRNOT00000015601
16.9789 -15.39 0.00318276 500 9 1 11 [+] picture button
NDUFB8 ENSGACT00000003175 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) (NADH-ubiquinone oxidoreductase ASHI subunit) (Complex I-ASHI) (CI-ASHI). [Source:Uniprot/SWISSPROT;Acc:O95169]
16.9789 -12.46 0.00320147 500 1 1 2 [+] picture button
NOLA3 ENSGACT00000025025 H/ACA ribonucleoprotein complex subunit 3 (Nucleolar protein family A member 3) (snoRNP protein NOP10). [Source:Uniprot/SWISSPROT;Acc:Q9NPE3]
16.9045 -16.73 0.00322738 500 3 1 6 [+] picture button
ENY2 ENSGACT00000007021 enhancer of yellow 2 homolog [Source:RefSeq_peptide;Acc:NP_064574]
17.0288 -16.68 0.00328073 516 6 1 6 [+] picture button
GGCX ENSGACT00000022751 Vitamin K-dependent gamma-carboxylase (EC 6.4.-.-) (Gamma-glutamyl carboxylase) (Vitamin K gamma glutamyl carboxylase). [Source:Uniprot/SWISSPROT;Acc:P38435]
16.487 -10.58 0.00331513 318 9 2 13 [+] picture button
PTPRE (1 of 2) ENSGACT00000003497 Receptor-type tyrosine-protein phosphatase epsilon precursor (EC 3.1.3.48) (Protein-tyrosine phosphatase epsilon) (R-PTP-epsilon). [Source:Uniprot/SWISSPROT;Acc:P23469]
16.5441 -13.48 0.00334627 500 5 3 5 [+] picture button
COPZ1 ENSGACT00000012491 Coatomer subunit zeta-1 (Zeta-1 coat protein) (Zeta-1 COP). [Source:Uniprot/SWISSPROT;Acc:P61923]
16.8824 -14.17 0.00334922 528 4 1 7 [+] picture button
DCTN4 ENSGACT00000024350 Dynactin subunit 4 (Dynactin subunit p62). [Source:Uniprot/SWISSPROT;Acc:Q9UJW0]
17.4698 -12.24 0.00336454 500 5 1 5 [+] picture button
BTBD14B (1 of 2) ENSGACT00000016888 BTB/POZ domain-containing protein 14B (Nucleus accumbens-1) (NAC-1). [Source:Uniprot/SWISSPROT;Acc:Q96RE7]
17.3854 -15.88 0.00337524 500 5 2 6 [+] picture button
FEM1C ENSGACT00000009855 feminization 1 homolog a [Source:RefSeq_peptide;Acc:NP_064562]
17.1425 -16.91 0.00337911 500 7 3 8 [+] picture button
Q96CK5_HUMAN ENSGACT00000012060 Homolog of Homo sapiens "PREDICTED "KIAA0226 gene product [Source:IPI;Acc:IPI00022496]"Homolog of Homo sapiens "PREDICTED "KIAA0226 gene product [Source:IPI;Acc:IPI00022496]" BY ORTHOLOGY TO:SINFRUT00000163195
16.5815 -9.41 0.00338841 500 7 3 10 [+] picture button
GLRX2 ENSGACT00000007779 Glutaredoxin-2, mitochondrial precursor. [Source:Uniprot/SWISSPROT;Acc:Q9NS18]
16.8753 -12.29 0.00338909 680 6 3 8 [+] picture button
LGALS4 ENSGACT00000017110 Galectin-4 (Lactose-binding lectin 4) (L-36 lactose-binding protein) (L36LBP) (Antigen NY-CO-27). [Source:Uniprot/SWISSPROT;Acc:P56470]
20.1255 -18.99 0.0034026 122 3 1 5 [+] picture button
LGALS4 ENSGACT00000017124 Galectin-4 (Lactose-binding lectin 4) (L-36 lactose-binding protein) (L36LBP) (Antigen NY-CO-27). [Source:Uniprot/SWISSPROT;Acc:P56470]
20.1255 -18.99 0.0034026 74 2 1 4 [+] picture button
LGALS4 ENSGACT00000017118 Galectin-4 (Lactose-binding lectin 4) (L-36 lactose-binding protein) (L36LBP) (Antigen NY-CO-27). [Source:Uniprot/SWISSPROT;Acc:P56470]
20.1255 -18.99 0.0034026 105 3 1 5 [+] picture button
MRPS14 ENSGACT00000018206 Mitochondrial 28S ribosomal protein S14 (S14mt) (MRP-S14). [Source:Uniprot/SWISSPROT;Acc:O60783]
16.8715 -15.72 0.00341111 500 6 3 7 [+] picture button
CD81 (1 of 2) ENSGACT00000016752 CD81 antigen (26 kDa cell surface protein TAPA-1) (Target of the antiproliferative antibody 1) (Tetraspanin-28) (Tspan-28). [Source:Uniprot/SWISSPROT;Acc:P60033]
16.8715 -16.62 0.00341111 500 5 1 5 [+] picture button
ENSGACT00000010739 keratin [Source:RefSeq_peptide;Acc:NP_001011879]keratin [Source:RefSeq_peptide;Acc:NP_001011879] BY ORTHOLOGY TO:SINFRUT00000172602
16.8715 -19.1 0.00341111 500 2 1 5 [+] picture button
ALAS1 (2 of 2) ENSGACT00000009301 5-aminolevulinate synthase, nonspecific, mitochondrial precursor (EC 2.3.1.37) (5-aminolevulinic acid synthase) (Delta-aminolevulinate synthase) (Delta-ALA synthetase) (ALAS-H). [Source:Uniprot/SWISSPROT;Acc:P13196]
17.3966 -13.8 0.00346828 117 4 1 6 [+] picture button
ENSGACT00000014587 Homolog of Homo sapiens "Eukaryotic initiation factor 5A isoform I variant A [Source:IPI;Acc:IPI00376005]"Homolog of Homo sapiens "Eukaryotic initiation factor 5A isoform I variant A [Source:IPI;Acc:IPI00376005]" BY ORTHOLOGY TO:SINFRUT00000127803
16.8879 -13.52 0.00354572 391 8 3 11 [+] picture button
NFYB ENSGACT00000025612 Nuclear transcription factor Y subunit beta (Nuclear transcription factor Y subunit B) (NF-YB) (CAAT-box DNA-binding protein subunit B). [Source:Uniprot/SWISSPROT;Acc:P25208]
16.9396 -13.92 0.00358698 428 7 4 11 [+] picture button
TFR2 ENSGACT00000001511 Transferrin receptor protein 2 (TfR2). [Source:Uniprot/SWISSPROT;Acc:Q9UP52]
16.9279 -12.1 0.00363674 500 7 1 9 [+] picture button
ENSGACT00000003082 NOT ANNOTATED
16.7434 -16.4 0.00365807 605 3 1 2 [+] picture button
SMARCA5 ENSGACT00000022818 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 (EC 3.6.1.-) (SWI/SNF-related matrix- associated actin-dependent regulator of chromatin A5) (Sucrose nonfermenting protein 2 homolog) (hSNF2H). [Source:Uniprot/SWISSPROT;Acc:O60264]
16.9712 -13.37 0.00366759 383 8 3 11 [+] picture button
HNRGT_HUMAN ENSGACT00000022823 Testis-specific heterogeneous nuclear ribonucleoprotein G-T (hnRNP G- T). [Source:Uniprot/SWISSPROT;Acc:O75526]
16.8281 -10.51 0.00366816 290 3 5 10 [+] picture button
RSHL3 ENSGACT00000002633 radial spokehead-like 3 [Source:RefSeq_peptide;Acc:NP_001010892]
16.3342 -10.53 0.00366916 500 6 1 8 [+] picture button
PHF5A ENSGACT00000006330 PHD finger-like domain-containing protein 5A (PHD finger-like domain protein 5A) (Splicing factor 3B-associated 14 kDa protein) (SF3b14b). [Source:Uniprot/SWISSPROT;Acc:Q7RTV0]
16.8228 -11.44 0.00370065 500 8 2 7 [+] picture button
CLDN10 ENSGACT00000001726 Claudin-10 (OSP-like protein). [Source:Uniprot/SWISSPROT;Acc:P78369]
16.8228 -12.14 0.00370065 500 5 1 5 [+] picture button
B4GALT4 ENSGACT00000027406 Beta-1,4-galactosyltransferase 4 (EC 2.4.1.-) (Beta-1,4-GalTase 4) (Beta4Gal-T4) (b4Gal-T4) (UDP-galactose:beta-N-acetylglucosamine beta- 1,4-galactosyltransferase 4) (UDP-Gal:beta-GlcNAc beta-1,4- galactosyltransferase 4) [Includes: N-acetyllactosamine s [Source:Uniprot/SWISSPROT;Acc:O60513]
17.1939 -13.65 0.00380993 500 9 2 14 [+] picture button
TASP1 ENSGACT00000006025 Threonine aspartase 1 (EC 3.4.25.-) (Taspase-1) [Contains: Threonine aspartase subunit alpha; Threonine aspartase subunit beta]. [Source:Uniprot/SWISSPROT;Acc:Q9H6P5]
17.0864 -15.95 0.00382841 500 6 2 11 [+] picture button
EDD1 ENSGACT00000006204 E3 ubiquitin-protein ligase EDD1 (EC 6.3.2.-) (Hyperplastic discs protein homolog) (hHYD) (Progestin-induced protein). [Source:Uniprot/SWISSPROT;Acc:O95071]
17.7377 -13.02 0.00383452 354 7 8 12 [+] picture button

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