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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Gasterosteus aculeatus and fru-miR-1

665 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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USP52 ENSGACT00000014234 PAB-dependent poly(A)-specific ribonuclease subunit 2 (EC 3.1.13.4) (hPan2) (Inactive ubiquitin carboxyl-terminal hydrolase 52). [Source:Uniprot/SWISSPROT;Acc:Q504Q3]
17.624 -16.47 0.0000846699 223 4 1 7 [+] picture button
TMEM16A (1 of 2) ENSGACT00000003130 transmembrane protein 16A [Source:RefSeq_peptide;Acc:NP_060513]
16.5053 -9.67 0.000113231 500 2 2 2 [+] picture button
NPY ENSGACT00000009118 Neuropeptide Y precursor [Contains: Neuropeptide Y (Neuropeptide tyrosine) (NPY); C-flanking peptide of NPY (CPON)]. [Source:Uniprot/SWISSPROT;Acc:P01303]
17.0864 -15.71 0.000115703 500 5 1 7 [+] picture button
MEST ENSGACT00000026129 Mesoderm-specific transcript homolog protein (Paternally-expressed gene 1 protein). [Source:Uniprot/SWISSPROT;Acc:Q5EB52]
18.154 -15.41 0.000116358 381 6 2 12 [+] picture button
RNF38 (2 of 2) ENSGACT00000024348 RING finger protein 38. [Source:Uniprot/SWISSPROT;Acc:Q9H0F5]
18.0535 -13.51 0.000121234 500 10 4 10 [+] picture button
ARRB2 (2 of 2) ENSGACT00000002375 Beta-arrestin-2 (Arrestin beta 2). [Source:Uniprot/SWISSPROT;Acc:P32121]
16.6117 -13.37 0.000127525 500 5 2 6 [+] picture button
DPM1 ENSGACT00000005609 Dolichol-phosphate mannosyltransferase (EC 2.4.1.83) (Dolichol- phosphate mannose synthase) (Dolichyl-phosphate beta-D- mannosyltransferase) (Mannose-P-dolichol synthase) (MPD synthase) (DPM synthase). [Source:Uniprot/SWISSPROT;Acc:O60762]
20.3102 -23.45 0.000132377 500 6 1 9 [+] picture button
WAS ENSGACT00000016239 Wiskott-Aldrich syndrome protein (WASp). [Source:Uniprot/SWISSPROT;Acc:P42768]
18.0788 -18.32 0.000145707 188 4 2 7 [+] picture button
GPR175 ENSGACT00000010858 Integral membrane protein GPR175. [Source:Uniprot/SWISSPROT;Acc:Q86W33]
17.7619 -17.57 0.000151177 500 5 3 8 [+] picture button
ENSGACT00000007359 protein phosphatase 1, regulatory subunit 12C [Source:RefSeq_peptide;Acc:NP_060077]protein phosphatase 1, regulatory subunit 12C [Source:RefSeq_peptide;Acc:NP_060077] BY ORTHOLOGY TO:ENSORLT00000007862
17.9772 -19.61 0.000153166 500 3 3 4 [+] picture button
SPARCL1 ENSGACT00000023690 SPARC-like protein 1 precursor (High endothelial venule protein) (Hevin) (MAST 9). [Source:Uniprot/SWISSPROT;Acc:Q14515]
17.2696 -19.38 0.000155422 480 9 1 9 [+] picture button
NEK3 ENSGACT00000015834 Serine/threonine-protein kinase Nek3 (EC 2.7.11.1) (NimA-related protein kinase 3) (HSPK 36). [Source:Uniprot/SWISSPROT;Acc:P51956]
18.3865 -13.63 0.000159355 500 7 2 9 [+] picture button
PAPD4 ENSGACT00000013092 PAP associated domain containing 4 [Source:RefSeq_peptide;Acc:NP_776158]
17.9461 -16.75 0.000171398 500 9 1 11 [+] picture button
ENSGACT00000024517 Homolog of Brachydanio rerio "Solute carrier family 1 (Glial high affinity glutamate transporter), member 3. [Source:Uniprot/SPTREMBL;Acc:Q6P4V2]"Homolog of Brachydanio rerio "Solute carrier family 1 (Glial high affinity glutamate transporter), member 3. [Source:Uniprot/SPTREMBL;Acc:Q6P4V2]" BY ORTHOLOGY TO:SINFRUT00000157481
16.8905 -12.46 0.000189913 627 4 1 5 [+] picture button
CRISPLD1 (2 of 2) ENSGACT00000019183 Cysteine-rich secretory protein LCCL domain-containing 1 precursor (LCCL domain-containing cysteine-rich secretory protein 1) (Cysteine- rich secretory protein 10) (CRISP-10) (Trypsin inhibitor Hl) (CocoaCrisp). [Source:Uniprot/SWISSPROT;Acc:Q9H336]
16.6565 -15.56 0.000208467 500 5 1 5 [+] picture button
ENSGACT00000006515 Homolog of Homo sapiens "Mitogen-activated protein kinase 13 [Source:IPI;Acc:IPI00005741]"Homolog of Homo sapiens "Mitogen-activated protein kinase 13 [Source:IPI;Acc:IPI00005741]" BY ORTHOLOGY TO:SINFRUT00000172719
17.0555 -13.57 0.00024828 257 7 3 13 [+] picture button
CCPG1 ENSGACT00000020960 Dyslexia susceptibility 1 candidate gene 1 protein. [Source:Uniprot/SWISSPROT;Acc:Q8WXU2]
19.269 -22.17 0.000258207 500 5 1 8 [+] picture button
NP_001002919.1 ENSGACT00000015165 RGPG542. [Source:Uniprot/SPTREMBL;Acc:Q6UX46]
16.764 -14.91 0.000260822 500 5 1 10 [+] picture button
PSMD8 ENSGACT00000017312 26S proteasome non-ATPase regulatory subunit 8 (26S proteasome regulatory subunit S14) (p31). [Source:Uniprot/SWISSPROT;Acc:P48556]
17.1003 -16.09 0.000275852 635 5 1 7 [+] picture button
EEF1E1 ENSGACT00000003035 Eukaryotic translation elongation factor 1 epsilon-1 (Multisynthetase complex auxiliary component p18) (Elongation factor p18). [Source:Uniprot/SWISSPROT;Acc:O43324]
17.5934 -15.81 0.000286758 500 9 1 17 [+] picture button
TOP2B ENSGACT00000010639 DNA topoisomerase 2-beta (EC 5.99.1.3) (DNA topoisomerase II, beta isozyme). [Source:Uniprot/SWISSPROT;Acc:Q02880]
18.4838 -16.53 0.000307122 500 6 4 7 [+] picture button
LAMC3 ENSGACT00000021051 Laminin subunit gamma-3 precursor (Laminin 12 gamma 3 subunit). [Source:Uniprot/SWISSPROT;Acc:Q9Y6N6]
16.764 -15 0.000308924 500 5 2 6 [+] picture button
TRPT1 ENSGACT00000022402 tRNA 2'-phosphotransferase 1 (EC 2.7.1.160). [Source:Uniprot/SWISSPROT;Acc:Q86TN4]
17.1161 -14.54 0.000316646 500 7 1 9 [+] picture button
NP_001073944.1 ENSGACT00000002750 CDNA FLJ41210 fis, clone BRALZ2014484. [Source:Uniprot/SPTREMBL;Acc:Q6ZWE6]
16.7931 -16.97 0.00031829 500 4 1 6 [+] picture button
TARBP1 ENSGACT00000007787 Probable methyltransferase TARBP1 (EC 2.1.1.-) (TAR RNA-binding protein 1) (TAR RNA-binding protein of 185 kDa) (TRP-185). [Source:Uniprot/SWISSPROT;Acc:Q13395]
17.395 -14.4 0.000329969 449 5 1 9 [+] picture button
PHGDH ENSGACT00000006822 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) (3-PGDH). [Source:Uniprot/SWISSPROT;Acc:O43175]
18.5336 -14.77 0.000335351 238 7 2 11 [+] picture button
ENSGACT00000008995 Homolog of Brachydanio rerio "Clatherin heavy chain. [Source:Uniprot/SPTREMBL;Acc:Q6DRI2]"Homolog of Brachydanio rerio "Clatherin heavy chain. [Source:Uniprot/SPTREMBL;Acc:Q6DRI2]" BY ORTHOLOGY TO:SINFRUT00000157549
16.4317 -10.77 0.000343459 402 6 3 9 [+] picture button
ENSGACT00000020875 Homolog of Homo sapiens "MARVEL domain containing 3 [Source:IPI;Acc:IPI00059270]"Homolog of Homo sapiens "MARVEL domain containing 3 [Source:IPI;Acc:IPI00059270]" BY ORTHOLOGY TO:SINFRUT00000178809
16.8531 -10.55 0.000364587 500 3 1 4 [+] picture button
SYT2 (2 of 2) ENSGACT00000004411 Synaptotagmin-2 (Synaptotagmin II) (SytII). [Source:Uniprot/SWISSPROT;Acc:Q8N9I0]
17.1901 -17.14 0.000367952 500 6 3 5 [+] picture button
MYT1L (1 of 2) ENSGACT00000015854 Myelin transcription factor 1-like protein (MyT1L protein) (MyT1-L). [Source:Uniprot/SWISSPROT;Acc:Q9UL68]
17.8169 -16.03 0.000385524 500 6 9 14 [+] picture button
LRRC8A (2 of 2) ENSGACT00000018592 Leucine-rich repeat-containing protein 8A. [Source:Uniprot/SWISSPROT;Acc:Q8IWT6]
16.4702 -10.42 0.000435525 500 6 2 11 [+] picture button
FASN ENSGACT00000002892 Fatty acid synthase (EC 2.3.1.85) [Includes: [Acyl-carrier-protein] S- acetyltransferase (EC 2.3.1.38); [Acyl-carrier-protein] S- malonyltransferase (EC 2.3.1.39); 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41); 3-oxoacyl-[acyl-carrier-protein] r [Source:Uniprot/SWISSPROT;Acc:P49327]
16.8715 -19.36 0.000457254 500 3 1 6 [+] picture button
PCNX ENSGACT00000016120 Pecanex-like protein 1 (Pecanex homolog). [Source:Uniprot/SWISSPROT;Acc:Q96RV3]
16.3466 -16.05 0.000458166 500 4 4 8 [+] picture button
ZBTB3 ENSGACT00000022409 Zinc finger and BTB domain-containing protein 3. [Source:Uniprot/SWISSPROT;Acc:Q9H5J0]
17.1939 -16.74 0.000476441 500 5 1 6 [+] picture button
ASS1 ENSGACT00000022088 Argininosuccinate synthase (EC 6.3.4.5) (Citrulline--aspartate ligase). [Source:Uniprot/SWISSPROT;Acc:P00966]
16.6007 -10.38 0.000485132 244 6 2 10 [+] picture button
MYO1C (2 of 2) ENSGACT00000026967 Myosin-Ic (Myosin I beta) (MMI-beta) (MMIb). [Source:Uniprot/SWISSPROT;Acc:O00159]
16.4914 -11.16 0.000512433 330 6 1 9 [+] picture button
RYBP ENSGACT00000015650 RING1 and YY1-binding protein (Death effector domain-associated factor) (DED-associated factor) (YY1 and E4TF1-associated factor 1) (Apoptin-associating protein 1) (APAP-1). [Source:Uniprot/SWISSPROT;Acc:Q8N488]
17.073 -17.36 0.000528661 500 6 3 9 [+] picture button
MTTP ENSGACT00000023640 Microsomal triglyceride transfer protein large subunit precursor. [Source:Uniprot/SWISSPROT;Acc:P55157]
17.8464 -18.96 0.000592888 669 6 4 9 [+] picture button
SLC35D1 (2 of 2) ENSGACT00000021348 UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter (UDP- GlcA/UDP-GalNAc transporter) (Solute carrier family 35 member D1) (UDP-galactose transporter-related protein 7) (UGTrel7). [Source:Uniprot/SWISSPROT;Acc:Q9NTN3]
16.4416 -10.91 0.000605624 500 8 2 10 [+] picture button
RFC4 ENSGACT00000002715 Replication factor C subunit 4 (Replication factor C 37 kDa subunit) (RF-C 37 kDa subunit) (RFC37) (Activator 1 37 kDa subunit) (A1 37 kDa subunit). [Source:Uniprot/SWISSPROT;Acc:P35249]
16.5332 -12.21 0.00061588 500 5 1 7 [+] picture button
FERD3L ENSGACT00000008511 nephew of atonal 3 [Source:RefSeq_peptide;Acc:NP_690862]
16.8715 -16.56 0.00062071 500 3 3 3 [+] picture button
PLEK2 ENSGACT00000016269 Pleckstrin-2. [Source:Uniprot/SWISSPROT;Acc:Q9NYT0]
18.8384 -19.92 0.000629869 500 5 1 5 [+] picture button
ZNF142 ENSGACT00000003332 Zinc finger protein 142 (HA4654). [Source:Uniprot/SWISSPROT;Acc:P52746]
17.8386 -14.16 0.000635286 500 7 2 12 [+] picture button
NGFR (2 of 2) ENSGACT00000009353 Tumor necrosis factor receptor superfamily member 16 precursor (Low- affinity nerve growth factor receptor) (NGF receptor) (Gp80-LNGFR) (p75 ICD) (Low affinity neurotrophin receptor p75NTR) (CD271 antigen). [Source:Uniprot/SWISSPROT;Acc:P08138]
18.0497 -17.31 0.000650318 500 3 1 8 [+] picture button
CNOT3 (1 of 2) ENSGACT00000015235 CCR4-NOT transcription complex subunit 3 (CCR4-associated factor 3) (Leukocyte receptor cluster member 2). [Source:Uniprot/SWISSPROT;Acc:O75175]
16.5851 -15.93 0.000653184 500 4 4 5 [+] picture button
GPR137B (1 of 3) ENSGACT00000005541 Integral membrane protein GPR137B (Transmembrane 7 superfamily member 1). [Source:Uniprot/SWISSPROT;Acc:O60478]
16.3739 -14.12 0.000682825 407 5 2 10 [+] picture button
PDGFRL ENSGACT00000024635 Platelet-derived growth factor receptor-like protein precursor (PDGF receptor beta-like tumor suppressor). [Source:Uniprot/SWISSPROT;Acc:Q15198]
16.3733 -8.83 0.000683856 181 6 1 8 [+] picture button
LLGL1 ENSGACT00000018834 Lethal(2) giant larvae protein homolog 1 (LLGL) (Human homolog to the D-lgl gene) (Hugl-1) (DLG4). [Source:Uniprot/SWISSPROT;Acc:Q15334]
17.6014 -18.64 0.000687892 500 3 1 5 [+] picture button
MITF (2 of 2) ENSGACT00000015754 Microphthalmia-associated transcription factor. [Source:Uniprot/SWISSPROT;Acc:O75030]
18.6983 -19.11 0.000693702 500 5 1 4 [+] picture button
GRIK1 (1 of 2) ENSGACT00000015616 Glutamate receptor, ionotropic kainate 1 precursor (Glutamate receptor 5) (GluR-5) (GluR5) (Excitatory amino acid receptor 3) (EAA3). [Source:Uniprot/SWISSPROT;Acc:P39086]
17.3013 -17.43 0.000701472 500 3 1 5 [+] picture button

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Download table: GFF TXT
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