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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Gasterosteus aculeatus and fru-miR-1

665 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
picture button picture button picture button picture button picture button picture button picture button picture button picture button picture button
ENSGACT00000010802 NOT ANNOTATED
17.0565 -19.2 0.049979 500 5 1 4 [+] picture button
RAPGEFL1 ENSGACT00000001454 Rap guanine nucleotide exchange factor (GEF)-like 1 [Source:RefSeq_peptide;Acc:NP_057423]
17.0614 -13.33 0.0497691 500 3 1 4 [+] picture button
ENSGACT00000010327 conserved hypothetical proteinconserved hypothetical protein BY ORTHOLOGY TO:AAEL001483-RA
17.0614 -12.23 0.0497691 500 4 1 6 [+] picture button
ENSGACT00000007685 NOT ANNOTATED
17.0653 -12.81 0.0496068 500 2 1 3 [+] picture button
ENSGACT00000007680 NOT ANNOTATED
17.0653 -12.81 0.0496068 500 3 1 4 [+] picture button
ENSGACT00000025850 Homolog of Homo sapiens "SRrp129 protein [Source:IPI;Acc:IPI00181359]"Homolog of Homo sapiens "SRrp129 protein [Source:IPI;Acc:IPI00181359]" BY ORTHOLOGY TO:SINFRUT00000139075
17.0692 -10.6 0.0494447 500 8 2 11 [+] picture button
GPR30 (2 of 2) ENSGACT00000011880 Chemokine receptor-like 2 (G-protein coupled receptor 30) (IL8-related receptor DRY12) (Flow-induced endothelial G-protein coupled receptor) (FEG-1) (GPCR-BR). [Source:Uniprot/SWISSPROT;Acc:Q99527]
17.0708 -12.66 0.0493762 500 2 1 4 [+] picture button
SLC9A8 ENSGACT00000003369 Sodium/hydrogen exchanger 8 (Na(+)/H(+) exchanger 8) (NHE-8) (Solute carrier family 9 member 8). [Source:Uniprot/SWISSPROT;Acc:Q9Y2E8]
17.0708 -16.92 0.0493762 500 4 1 5 [+] picture button
PTGS2 ENSGACT00000009872 Prostaglandin G/H synthase 2 precursor (EC 1.14.99.1) (Cyclooxygenase- 2) (COX-2) (Prostaglandin-endoperoxide synthase 2) (Prostaglandin H2 synthase 2) (PGH synthase 2) (PGHS-2) (PHS II). [Source:Uniprot/SWISSPROT;Acc:P35354]
17.073 -13.88 0.0492826 564 4 2 5 [+] picture button
NFYB ENSGACT00000025613 Nuclear transcription factor Y subunit beta (Nuclear transcription factor Y subunit B) (NF-YB) (CAAT-box DNA-binding protein subunit B). [Source:Uniprot/SWISSPROT;Acc:P25208]
17.0847 -13.92 0.0487992 396 6 1 6 [+] picture button
ENSGACT00000017048 Homolog of Homo sapiens "Orphan sodium- and chloride-dependent neurotransmitter transporter NTT73 [Source:IPI;Acc:IPI00018071]"Homolog of Homo sapiens "Orphan sodium- and chloride-dependent neurotransmitter transporter NTT73 [Source:IPI;Acc:IPI00018071]" BY ORTHOLOGY TO:SINFRUT00000158602
17.0864 -17.08 0.0487283 500 6 1 4 [+] picture button
ABCC1 (3 of 3) ENSGACT00000025401 Multidrug resistance-associated protein 1 (ATP-binding cassette sub- family C member 1) (Leukotriene C(4) transporter) (LTC4 transporter). [Source:Uniprot/SWISSPROT;Acc:P33527]
17.0864 -14.3 0.0487283 500 7 1 7 [+] picture button
ENSGACT00000026250 NOT ANNOTATED
17.0864 -13.45 0.0487283 500 6 1 5 [+] picture button
TTL ENSGACT00000003981 Tubulin--tyrosine ligase (EC 6.3.2.25) (TTL). [Source:Uniprot/SWISSPROT;Acc:Q8NG68]
17.0864 -15.63 0.0487283 500 9 1 12 [+] picture button
LOC389342 ENSGACT00000017343 ribosomal protein L10 [Source:RefSeq_peptide;Acc:NP_956321]ribosomal protein L10 [Source:RefSeq_peptide;Acc:NP_956321] BY ORTHOLOGY TO:ENSDART00000032744
17.0864 -14.83 0.0487283 500 1 1 1 [+] picture button
ENSGACT00000019663 NOT ANNOTATED
17.0864 -13.96 0.0487283 500 6 1 7 [+] picture button
ENSGACT00000019572 NOT ANNOTATED
17.0864 -15.18 0.0487283 500 2 1 2 [+] picture button
PCDH17 (1 of 2) ENSGACT00000020181 Protocadherin-17 precursor (Protocadherin-68). [Source:Uniprot/SWISSPROT;Acc:O14917]
17.0864 -15.89 0.0487283 500 6 1 5 [+] picture button
EIF4E (1 of 2) ENSGACT00000021787 Eukaryotic translation initiation factor 4E (eIF4E) (eIF-4E) (mRNA cap-binding protein) (eIF-4F 25 kDa subunit). [Source:Uniprot/SWISSPROT;Acc:P06730]
17.0864 -13.6 0.0487283 500 6 1 9 [+] picture button
ENSGACT00000006489 NOT ANNOTATED
17.0864 -16.72 0.0487283 500 2 1 2 [+] picture button
ZNF259 ENSGACT00000005770 Zinc-finger protein ZPR1 (Zinc finger protein 259). [Source:Uniprot/SWISSPROT;Acc:O75312]
17.0864 -19.7 0.0487283 500 4 3 4 [+] picture button
TASP1 ENSGACT00000006035 Threonine aspartase 1 (EC 3.4.25.-) (Taspase-1) [Contains: Threonine aspartase subunit alpha; Threonine aspartase subunit beta]. [Source:Uniprot/SWISSPROT;Acc:Q9H6P5]
17.0864 -15.95 0.0487283 500 4 1 5 [+] picture button
TF ENSGACT00000017999 Serotransferrin precursor (Transferrin) (Siderophilin) (Beta-1-metal- binding globulin). [Source:Uniprot/SWISSPROT;Acc:P02787]
17.0864 -17.26 0.0487283 500 6 1 6 [+] picture button
ENSGACT00000003930 POU domain protein 12 (POU domain protein zp-12) (Class III POU domain protein taichi) (Brain-specific homeobox/POU domain protein 1.1) (Brn- 1.1). [Source:Uniprot/SWISSPROT;Acc:P56224]POU domain protein 12 (POU domain protein zp-12) (Class III POU domain protein taichi) (Brain-specific homeobox/POU domain protein 1.1) (Brn- 1.1). [Source:Uniprot/SWISSPROT;Acc:P56224] BY ORTHOLOGY TO:ENSDART00000061593
17.0864 -13.11 0.0487283 500 3 2 5 [+] picture button
C16orf7 ENSGACT00000000581 Uncharacterized protein C16orf7 (Protein ATP-BL). [Source:Uniprot/SWISSPROT;Acc:Q9Y2B5]
17.0864 -13.58 0.0487283 500 3 1 3 [+] picture button
CDC37 ENSGACT00000018241 Hsp90 co-chaperone Cdc37 (Hsp90 chaperone protein kinase-targeting subunit) (p50Cdc37). [Source:Uniprot/SWISSPROT;Acc:Q16543]
17.0864 -11.98 0.0487283 500 4 1 5 [+] picture button
RSAD1 ENSGACT00000014057 Radical S-adenosyl methionine domain-containing protein 1, mitochondrial precursor (EC 1.3.99.-) (Oxygen-independent coproporphyrinogen III oxidase-like protein RSAD1). [Source:Uniprot/SWISSPROT;Acc:Q9HA92]
17.0864 -17.46 0.0487283 500 4 1 5 [+] picture button
DVL3 (2 of 2) ENSGACT00000006243 Segment polarity protein dishevelled homolog DVL-3 (Dishevelled-3) (DSH homolog 3). [Source:Uniprot/SWISSPROT;Acc:Q92997]
17.0864 -16.33 0.0487283 500 3 1 4 [+] picture button
NP_775734.1 (2 of 2) ENSGACT00000023623 CDNA FLJ43363 fis, clone NT2RP7017474. [Source:Uniprot/SPTREMBL;Acc:Q6ZUS6]
17.0864 -12.84 0.0487283 500 3 2 3 [+] picture button
SENP7 (2 of 2) ENSGACT00000003630 Sentrin-specific protease 7 (EC 3.4.22.-) (Sentrin/SUMO-specific protease SENP7) (SUMO-1-specific protease 2). [Source:Uniprot/SWISSPROT;Acc:Q9BQF6]
17.0915 -9.36 0.0485188 454 3 1 4 [+] picture button
LIMD2 (2 of 2) ENSGACT00000004725 LIM domain-containing protein 2. [Source:Uniprot/SWISSPROT;Acc:Q9BT23]
17.0972 -12.72 0.048283 527 1 1 2 [+] picture button
PAX2 ENSGACT00000003188 Paired box protein Pax-2. [Source:Uniprot/SWISSPROT;Acc:Q02962]
17.1065 -14.68 0.0479035 500 2 1 5 [+] picture button
NP_060190.2 (2 of 2) ENSGACT00000019001 signal-transducing adaptor protein-2 isoform 1 [Source:RefSeq_peptide;Acc:NP_060190]
17.1124 -13.87 0.0476666 465 6 2 12 [+] picture button
C11orf56 ENSGACT00000002797 Uncharacterized protein C11orf56. [Source:Uniprot/SWISSPROT;Acc:Q8N612]
17.1161 -14.29 0.0475182 500 6 2 6 [+] picture button
TP53I11 ENSGACT00000013128 p53-induced protein [Source:RefSeq_peptide;Acc:NP_006025]
17.1164 -13.75 0.0475056 500 6 2 11 [+] picture button
NP_079425.2 (1 of 2) ENSGACT00000005441 CDNA: FLJ20920 fis, clone ADSE00877 (AVYV493) (Hypothetical protein FLJ20920). [Source:Uniprot/SPTREMBL;Acc:Q9H7G2]
17.1198 -18.59 0.0473672 500 5 1 5 [+] picture button
FAM128A ENSGACT00000020808 FAM128A protein (Hypothetical protein tmp_locus_22). [Source:Uniprot/SPTREMBL;Acc:Q8WVB2]
17.1236 -15.14 0.0472164 500 4 1 5 [+] picture button
EDD1 ENSGACT00000006230 E3 ubiquitin-protein ligase EDD1 (EC 6.3.2.-) (Hyperplastic discs protein homolog) (hHYD) (Progestin-induced protein). [Source:Uniprot/SWISSPROT;Acc:O95071]
17.1247 -13.02 0.0471701 500 4 1 5 [+] picture button
MARK3 ENSGACT00000006284 MAP/microtubule affinity-regulating kinase 3 (EC 2.7.11.1) (Cdc25C- associated protein kinase 1) (cTAK1) (C-TAK1) (Serine/threonine protein kinase p78) (Ser/Thr protein kinase PAR-1) (Protein kinase STK10). [Source:Uniprot/SWISSPROT;Acc:P27448]
17.1278 -17.11 0.0470475 449 4 1 7 [+] picture button
ENSGACT00000013431 Homolog of Homo sapiens "Splice Isoform 1 of LIM homeobox transcription factor 1 alpha [Source:IPI;Acc:IPI00152586]"Homolog of Homo sapiens "Splice Isoform 1 of LIM homeobox transcription factor 1 alpha [Source:IPI;Acc:IPI00152586]" BY ORTHOLOGY TO:SINFRUT00000150632
17.1463 -17.46 0.0463132 500 4 4 4 [+] picture button
SERPINA10 (1 of 2) ENSGACT00000010693 Protein Z-dependent protease inhibitor precursor (PZ-dependent protease inhibitor) (PZI) (Serpin A10). [Source:Uniprot/SWISSPROT;Acc:Q9UK55]
17.1538 -11.31 0.0460205 500 7 1 9 [+] picture button
ADCYAP1 (1 of 2) ENSGACT00000005497 Pituitary adenylate cyclase-activating polypeptide precursor (PACAP) [Contains: PACAP-related peptide (PRP-48); Pituitary adenylate cyclase-activating polypeptide 27 (PACAP-27) (PACAP27); Pituitary adenylate cyclase-activating polypeptide 38 (PACAP-38) (P [Source:Uniprot/SWISSPROT;Acc:P18509]
17.1569 -16.28 0.0459 488 8 2 15 [+] picture button
CYGB (2 of 2) ENSGACT00000016856 Cytoglobin (Histoglobin) (HGb) (Stellate cell activation-associated protein). [Source:Uniprot/SWISSPROT;Acc:Q8WWM9]
17.1571 -12.54 0.0458919 419 7 3 10 [+] picture button
ENSGACT00000007247 hypothetical protein LOC431729 [Source:RefSeq_peptide;Acc:NP_001002182]hypothetical protein LOC431729 [Source:RefSeq_peptide;Acc:NP_001002182] BY ORTHOLOGY TO:ENSDART00000017307
17.1625 -16 0.0456791 427 8 3 13 [+] picture button
ENSGACT00000004839 hypothetical protein LOC692276 [Source:RefSeq_peptide;Acc:NP_001038714]hypothetical protein LOC692276 [Source:RefSeq_peptide;Acc:NP_001038714] BY ORTHOLOGY TO:ENSDART00000040756
17.1646 -15.92 0.0456004 508 3 2 4 [+] picture button
GGPS1 ENSGACT00000005673 Geranylgeranyl pyrophosphate synthetase (GGPP synthetase) (GGPPSase) (Geranylgeranyl diphosphate synthase) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10); Farnesyltranstransferase (EC 2.5.1.29)]. [Source:Uniprot/SWISSPROT;Acc:O95749]
17.1655 -15.89 0.045563 500 3 1 4 [+] picture button
ENSGACT00000002018 NOT ANNOTATED
17.1692 -16.25 0.0454219 107 3 1 5 [+] picture button
PDCL3 ENSGACT00000001071 Phosducin-like protein 3 (Viral IAP-associated factor 1) (VIAF-1) (HTPHLP). [Source:Uniprot/SWISSPROT;Acc:Q9H2J4]
17.1692 -14.27 0.0454219 125 2 1 3 [+] picture button
TMEM79 (2 of 3) ENSGACT00000004052 Transmembrane protein 79. [Source:Uniprot/SWISSPROT;Acc:Q9BSE2]
17.1692 -12.79 0.0454219 229 3 1 4 [+] picture button
ZNF335 ENSGACT00000010651 Zinc finger protein 335. [Source:Uniprot/SWISSPROT;Acc:Q9H4Z2]
17.1692 -12.95 0.0454219 500 3 1 8 [+] picture button

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Download table: GFF TXT
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