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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Gasterosteus aculeatus and fru-miR-1

665 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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NP_001005920.2 ENSGACT00000019669 Similar to C. Elegans protein F17C8.5. [Source:Uniprot/SPTREMBL;Acc:Q96S16]
16.7144 -10.82 0.00400031 317 5 1 11 [+] picture button
AP2B1 ENSGACT00000027500 AP-2 complex subunit beta-1 (Adapter-related protein complex 2 beta-1 subunit) (Beta-adaptin) (Plasma membrane adaptor HA2/AP2 adaptin beta subunit) (Clathrin assembly protein complex 2 beta large chain) (AP105B). [Source:Uniprot/SWISSPROT;Acc:P63010]
17.1939 -13.48 0.00210329 500 4 1 5 [+] picture button
ENSGACT00000022597 NOT ANNOTATED
17.0224 -12.96 0.00162451 386 8 1 13 [+] picture button
LYAR_HUMAN ENSGACT00000012127 Cell growth-regulating nucleolar protein. [Source:Uniprot/SWISSPROT;Acc:Q9NX58]
16.4416 -15.22 0.0214613 500 7 3 9 [+] picture button
ENSGACT00000014459 NOT ANNOTATED
18.0535 -20.13 0.0211819 500 7 1 8 [+] picture button
C1orf124 ENSGACT00000009127 Uncharacterized protein C1orf124. [Source:Uniprot/SPTREMBL;Acc:Q5TE78]
17.3013 -16.75 0.00671583 500 7 1 10 [+] picture button
MLF2 ENSGACT00000013304 Myeloid leukemia factor 2 (Myelodysplasia-myeloid leukemia factor 2). [Source:Uniprot/SWISSPROT;Acc:Q15773]
16.3342 -11.57 0.00826901 500 4 1 4 [+] picture button
ASPM ENSGACT00000007826 Abnormal spindle-like microcephaly-associated protein (Abnormal spindle protein homolog) (Asp homolog). [Source:Uniprot/SWISSPROT;Acc:Q8IZT6]
17.8514 -13.71 0.0000175345 90 4 3 6 [+] picture button
C1orf96 (1 of 2) ENSGACT00000021371 Uncharacterized protein C1orf96. [Source:Uniprot/SWISSPROT;Acc:Q6IQ19]
17.6237 -19.89 0.0307638 500 6 1 8 [+] picture button
MYO1C (2 of 2) ENSGACT00000026967 Myosin-Ic (Myosin I beta) (MMI-beta) (MMIb). [Source:Uniprot/SWISSPROT;Acc:O00159]
16.4914 -11.16 0.000512433 330 6 1 9 [+] picture button
LOC389342 ENSGACT00000017343 ribosomal protein L10 [Source:RefSeq_peptide;Acc:NP_956321]ribosomal protein L10 [Source:RefSeq_peptide;Acc:NP_956321] BY ORTHOLOGY TO:ENSDART00000032744
17.0864 -14.83 0.0487283 500 1 1 1 [+] picture button
CCRN4L (2 of 2) ENSGACT00000024463 Nocturnin (CCR4 protein homolog). [Source:Uniprot/SWISSPROT;Acc:Q9UK39]
17.6237 -15.44 0.0307638 500 1 1 1 [+] picture button
FOXB2 ENSGACT00000010581 Forkhead box protein B2. [Source:Uniprot/SWISSPROT;Acc:Q5VYV0]
17.5173 -16.58 0.0337208 500 1 1 1 [+] picture button
C6orf162 ENSGACT00000016232 Uncharacterized protein C6orf162. [Source:Uniprot/SWISSPROT;Acc:Q96KF7]
17.1463 -17.32 0.000814711 500 1 1 1 [+] picture button
DYNLRB1 ENSGACT00000000015 Dynein light chain roadblock-type 1 (Dynein light chain 2A, cytoplasmic) (Dynein-associated protein Km23) (Bithoraxoid-like protein) (BLP). [Source:Uniprot/SWISSPROT;Acc:Q9NP97]
16.5491 -15.32 0.00878484 500 1 1 1 [+] picture button
ENSGACT00000020578 NOT ANNOTATED
17.8386 -14.66 0.025539 500 1 1 1 [+] picture button
ENSGACT00000003082 NOT ANNOTATED
16.7434 -16.4 0.00365807 605 3 1 2 [+] picture button
ENSGACT00000022749 Homolog of Homo sapiens "Splice Isoform 1 of Tripartite motif protein 16 [Source:IPI;Acc:IPI00007955]"Homolog of Homo sapiens "Splice Isoform 1 of Tripartite motif protein 16 [Source:IPI;Acc:IPI00007955]" BY ORTHOLOGY TO:SINFRUT00000144228
18.4199 -15.63 0.0153721 258 6 1 10 [+] picture button
LIX1L ENSGACT00000005020 LIX1-like protein. [Source:Uniprot/SWISSPROT;Acc:Q8IVB5]
18.161 -21.11 0.0192848 500 7 3 11 [+] picture button
ENSGACT00000010327 conserved hypothetical proteinconserved hypothetical protein BY ORTHOLOGY TO:AAEL001483-RA
17.0614 -12.23 0.0497691 500 4 1 6 [+] picture button
KHSRP (1 of 2) ENSGACT00000025154 Far upstream element-binding protein 2 (FUSE-binding protein 2) (KH type-splicing regulatory protein) (KSRP) (p75). [Source:Uniprot/SWISSPROT;Acc:Q92945]
16.5778 -15.92 0.00555696 500 2 1 4 [+] picture button
TNRC6B (2 of 2) ENSGACT00000009864 Trinucleotide repeat-containing 6B protein. [Source:Uniprot/SWISSPROT;Acc:Q9UPQ9]
16.6565 -17.15 0.0216595 500 7 2 8 [+] picture button
TASP1 ENSGACT00000006035 Threonine aspartase 1 (EC 3.4.25.-) (Taspase-1) [Contains: Threonine aspartase subunit alpha; Threonine aspartase subunit beta]. [Source:Uniprot/SWISSPROT;Acc:Q9H6P5]
17.0864 -15.95 0.0487283 500 4 1 5 [+] picture button
ENSGACT00000012706 NOT ANNOTATED
17.8386 -15.11 0.025539 500 6 1 9 [+] picture button
HMG20A ENSGACT00000004556 High mobility group protein 20A (HMG box-containing protein 20A) (HMG domain-containing protein HMGX1). [Source:Uniprot/SWISSPROT;Acc:Q9NP66]
17.9278 -16.39 0.0236351 427 6 1 8 [+] picture button
SLC44A1 (1 of 2) ENSGACT00000023873 Choline transporter-like protein 1 (Solute carrier family 44 member 1) (CD92 antigen) (CDw92). [Source:Uniprot/SWISSPROT;Acc:Q8WWI5]
17.7824 -15.18 0.00173254 461 7 2 8 [+] picture button
TOP2B ENSGACT00000010639 DNA topoisomerase 2-beta (EC 5.99.1.3) (DNA topoisomerase II, beta isozyme). [Source:Uniprot/SWISSPROT;Acc:Q02880]
18.4838 -16.53 0.000307122 500 6 4 7 [+] picture button
DDX5 (1 of 2) ENSGACT00000009367 Probable ATP-dependent RNA helicase DDX5 (EC 3.6.1.-) (DEAD box protein 5) (RNA helicase p68). [Source:Uniprot/SWISSPROT;Acc:P17844]
19.8981 -12.5 0.00000284863 297 8 4 17 [+] picture button
C6orf182 ENSGACT00000011762 Uncharacterized protein C6orf182. [Source:Uniprot/SWISSPROT;Acc:Q8IYX8]
16.4702 -10.4 0.00662982 500 6 1 8 [+] picture button
BDNF ENSGACT00000020491 Brain-derived neurotrophic factor precursor (BDNF) (Abrineurin). [Source:Uniprot/SWISSPROT;Acc:P23560]
17.0385 -10.59 0.00189909 500 6 9 12 [+] picture button
HDDC2 ENSGACT00000017561 HD domain containing 2. [Source:Uniprot/SPTREMBL;Acc:Q5TDQ4]
19.4433 -16.89 0.00623231 279 5 2 7 [+] picture button
NEK3 ENSGACT00000015834 Serine/threonine-protein kinase Nek3 (EC 2.7.11.1) (NimA-related protein kinase 3) (HSPK 36). [Source:Uniprot/SWISSPROT;Acc:P51956]
18.3865 -13.63 0.000159355 500 7 2 9 [+] picture button
TASP1 ENSGACT00000006025 Threonine aspartase 1 (EC 3.4.25.-) (Taspase-1) [Contains: Threonine aspartase subunit alpha; Threonine aspartase subunit beta]. [Source:Uniprot/SWISSPROT;Acc:Q9H6P5]
17.0864 -15.95 0.00382841 500 6 2 11 [+] picture button
ERCC4 ENSGACT00000005869 DNA repair endonuclease XPF (EC 3.1.-.-) (DNA excision repair protein ERCC-4) (DNA-repair protein complementing XP-F cells) (Xeroderma pigmentosum group F-complementing protein). [Source:Uniprot/SWISSPROT;Acc:Q92889]
17.4088 -17.1 0.0370159 500 6 3 13 [+] picture button
LIX1L ENSGACT00000005021 LIX1-like protein. [Source:Uniprot/SWISSPROT;Acc:Q8IVB5]
18.161 -21.11 0.0192848 500 4 1 4 [+] picture button
TYW1 ENSGACT00000016809 tRNA wybutosine-synthesizing protein 1 homolog A (Radical S-adenosyl methionine and flavodoxin domain-containing protein 1). [Source:Uniprot/SWISSPROT;Acc:Q9NV66]
17.0576 -14.15 0.00249316 500 5 1 7 [+] picture button
ENSGACT00000006957 transmembrane protein 16G isoform NGEP long [Source:RefSeq_peptide;Acc:NP_001001891]transmembrane protein 16G isoform NGEP long [Source:RefSeq_peptide;Acc:NP_001001891] BY ORTHOLOGY TO:SINFRUT00000167036
16.7224 -15.15 0.00688344 500 4 1 5 [+] picture button
NLK ENSGACT00000006619 Serine/threonine kinase NLK (EC 2.7.11.24) (Nemo-like kinase) (Protein LAK1). [Source:Uniprot/SWISSPROT;Acc:Q9UBE8]
16.6792 -9.66 0.0047004 500 5 1 5 [+] picture button
PC ENSGACT00000026135 Pyruvate carboxylase, mitochondrial precursor (EC 6.4.1.1) (Pyruvic carboxylase) (PCB). [Source:Uniprot/SWISSPROT;Acc:P11498]
16.3342 -16.75 0.000751935 500 3 2 3 [+] picture button
ENSGACT00000014587 Homolog of Homo sapiens "Eukaryotic initiation factor 5A isoform I variant A [Source:IPI;Acc:IPI00376005]"Homolog of Homo sapiens "Eukaryotic initiation factor 5A isoform I variant A [Source:IPI;Acc:IPI00376005]" BY ORTHOLOGY TO:SINFRUT00000127803
16.8879 -13.52 0.00354572 391 8 3 11 [+] picture button
TRIP4 ENSGACT00000022477 Activating signal cointegrator 1 (ASC-1) (Thyroid receptor-interacting protein 4) (TRIP-4). [Source:Uniprot/SWISSPROT;Acc:Q15650]
16.487 -14.71 0.0064503 250 5 3 11 [+] picture button
ABCF2 ENSGACT00000006157 ATP-binding cassette sub-family F member 2 (Iron-inhibited ABC transporter 2). [Source:Uniprot/SWISSPROT;Acc:Q9UG63]
16.3078 -16.06 0.0146305 459 6 4 7 [+] picture button
GAPDHS ENSGACT00000007887 Glyceraldehyde-3-phosphate dehydrogenase, testis-specific (EC 1.2.1.12) (Spermatogenic cell-specific glyceraldehyde 3-phosphate dehydrogenase 2) (GAPDH-2). [Source:Uniprot/SWISSPROT;Acc:O14556]
17.1939 -14.24 0.00414392 500 9 1 9 [+] picture button
MITF (2 of 2) ENSGACT00000015754 Microphthalmia-associated transcription factor. [Source:Uniprot/SWISSPROT;Acc:O75030]
18.6983 -19.11 0.000693702 500 5 1 4 [+] picture button
ABCC1 (3 of 3) ENSGACT00000025401 Multidrug resistance-associated protein 1 (ATP-binding cassette sub- family C member 1) (Leukotriene C(4) transporter) (LTC4 transporter). [Source:Uniprot/SWISSPROT;Acc:P33527]
17.0864 -14.3 0.0487283 500 7 1 7 [+] picture button
FEM1C ENSGACT00000009855 feminization 1 homolog a [Source:RefSeq_peptide;Acc:NP_064562]
17.1425 -16.91 0.00337911 500 7 3 8 [+] picture button
MARCH8 ENSGACT00000010304 E3 ubiquitin-protein ligase MARCH8 (EC 6.3.2.-) (Membrane-associated RING finger protein 8) (Membrane-associated RING-CH protein VIII) (MARCH-VIII) (RING finger protein 178) (Cellular modulator of immune recognition) (c-MIR). [Source:Uniprot/SWISSPROT;Acc:Q5T0T0]
16.4416 -15.28 0.0069459 500 5 1 7 [+] picture button
NP_001019827.1 ENSGACT00000017142 Putative L-aspartate dehydrogenase (EC 1.4.1.21). [Source:Uniprot/SWISSPROT;Acc:Q5I0J9]Putative L-aspartate dehydrogenase (EC 1.4.1.21). [Source:Uniprot/SWISSPROT;Acc:Q5I0J9] BY ORTHOLOGY TO:ENSRNOT00000026291
17.1939 -15.75 0.0444789 500 2 1 3 [+] picture button
KLHL6 ENSGACT00000005034 Kelch-like protein 6. [Source:Uniprot/SWISSPROT;Acc:Q8WZ60]
16.487 -13.61 0.00432612 173 4 3 7 [+] picture button
CRSP3 ENSGACT00000017494 CRSP complex subunit 3 (Cofactor required for Sp1 transcriptional activation subunit 3) (Transcriptional coactivator CRSP130) (Vitamin D3 receptor-interacting protein complex 130 kDa component) (DRIP130) (Activator-recruited cofactor 130 kDa component) (A [Source:Uniprot/SWISSPROT;Acc:Q9ULK4]
16.764 -17.19 0.00408222 500 6 1 9 [+] picture button

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Download table: GFF TXT
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