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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Gasterosteus aculeatus and fru-miR-1

665 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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PSMD8 ENSGACT00000017312 26S proteasome non-ATPase regulatory subunit 8 (26S proteasome regulatory subunit S14) (p31). [Source:Uniprot/SWISSPROT;Acc:P48556]
17.1003 -16.09 0.000275852 635 5 1 7 [+] picture button
MRPL40 ENSGACT00000005243 39S ribosomal protein L40, mitochondrial precursor (L40mt) (MRP-40) (Nuclear localization signal-containing protein deleted in velocardiofacial syndrome) (Up-regulated in metastasis). [Source:Uniprot/SWISSPROT;Acc:Q9NQ50]
17.3966 -12.22 0.0374048 231 4 2 5 [+] picture button
ALAS1 (2 of 2) ENSGACT00000009301 5-aminolevulinate synthase, nonspecific, mitochondrial precursor (EC 2.3.1.37) (5-aminolevulinic acid synthase) (Delta-aminolevulinate synthase) (Delta-ALA synthetase) (ALAS-H). [Source:Uniprot/SWISSPROT;Acc:P13196]
17.3966 -13.8 0.00346828 117 4 1 6 [+] picture button
ALAS1 (2 of 2) ENSGACT00000009306 5-aminolevulinate synthase, nonspecific, mitochondrial precursor (EC 2.3.1.37) (5-aminolevulinic acid synthase) (Delta-aminolevulinate synthase) (Delta-ALA synthetase) (ALAS-H). [Source:Uniprot/SWISSPROT;Acc:P13196]
17.3966 -13.8 0.0374048 151 3 1 3 [+] picture button
ASPM ENSGACT00000007826 Abnormal spindle-like microcephaly-associated protein (Abnormal spindle protein homolog) (Asp homolog). [Source:Uniprot/SWISSPROT;Acc:Q8IZT6]
17.8514 -13.71 0.0000175345 90 4 3 6 [+] picture button
TRIP4 ENSGACT00000022477 Activating signal cointegrator 1 (ASC-1) (Thyroid receptor-interacting protein 4) (TRIP-4). [Source:Uniprot/SWISSPROT;Acc:Q15650]
16.487 -14.71 0.0064503 250 5 3 11 [+] picture button
ACAD10 ENSGACT00000005013 Acyl-CoA dehydrogenase family member 10 (ACAD-10). [Source:Uniprot/SWISSPROT;Acc:Q6JQN1]
16.3342 -14.46 0.00826901 500 4 2 8 [+] picture button
ADAM10 (1 of 2) ENSGACT00000008138 ADAM 10 precursor (EC 3.4.24.81) (A disintegrin and metalloproteinase domain 10) (Mammalian disintegrin-metalloprotease) (Kuzbanian protein homolog) (CD156c antigen) (CDw156). [Source:Uniprot/SWISSPROT;Acc:O14672]
17.4595 -13.52 0.0151878 500 5 3 10 [+] picture button
ADAMTS17 ENSGACT00000016611 ADAMTS-17 precursor (EC 3.4.24.-) (A disintegrin and metalloproteinase with thrombospondin motifs 17) (ADAM-TS 17) (ADAM-TS17). [Source:Uniprot/SWISSPROT;Acc:Q8TE56]
17.1939 -13.99 0.0444789 500 3 1 3 [+] picture button
ADAMTS17 ENSGACT00000016608 ADAMTS-17 precursor (EC 3.4.24.-) (A disintegrin and metalloproteinase with thrombospondin motifs 17) (ADAM-TS 17) (ADAM-TS17). [Source:Uniprot/SWISSPROT;Acc:Q8TE56]
17.1939 -13.99 0.0444789 500 4 1 4 [+] picture button
NECAP2 ENSGACT00000001495 Adaptin ear-binding coat-associated protein 2 (NECAP-2). [Source:Uniprot/SWISSPROT;Acc:Q9NVZ3]
16.6891 -14.09 0.00000664089 500 5 2 7 [+] picture button
LOC645619 ENSGACT00000009518 Adenylate kinase isoenzyme 4, mitochondrial (EC 2.7.4.3) (Adenylate kinase 3-like 1) (ATP-AMP transphosphorylase). [Source:Uniprot/SWISSPROT;Acc:Q9WUS0]Adenylate kinase isoenzyme 4, mitochondrial (EC 2.7.4.3) (Adenylate kinase 3-like 1) (ATP-AMP transphosphorylase). [Source:Uniprot/SWISSPROT;Acc:Q9WUS0] BY ORTHOLOGY TO:ENSRNOT00000015601
16.9789 -15.39 0.00318276 500 9 1 11 [+] picture button
SLC25A5 ENSGACT00000027413 ADP/ATP translocase 2 (Adenine nucleotide translocator 2) (ANT 2) (ADP,ATP carrier protein 2) (Solute carrier family 25 member 5) (ADP,ATP carrier protein, fibroblast isoform). [Source:Uniprot/SWISSPROT;Acc:P05141]
17.8514 -13.89 0.0100572 224 5 3 6 [+] picture button
SLC25A5 ENSGACT00000027412 ADP/ATP translocase 2 (Adenine nucleotide translocator 2) (ANT 2) (ADP,ATP carrier protein 2) (Solute carrier family 25 member 5) (ADP,ATP carrier protein, fibroblast isoform). [Source:Uniprot/SWISSPROT;Acc:P05141]
17.8514 -13.89 0.0252571 266 6 1 7 [+] picture button
SSX2IP (2 of 2) ENSGACT00000022841 Afadin- and alpha-actinin-binding protein (ADIP) (Afadin DIL domain- interacting protein) (SSX2-interacting protein). [Source:Uniprot/SWISSPROT;Acc:Q9Y2D8]
18.6319 -14.52 0.0127594 417 7 2 15 [+] picture button
INA (1 of 2) ENSGACT00000024167 Alpha-internexin (Alpha-Inx) (66 kDa neurofilament protein) (Neurofilament-66) (NF-66). [Source:Uniprot/SWISSPROT;Acc:Q16352]
17.7312 -17.53 0.0280336 500 4 3 7 [+] picture button
ANKRD41 ENSGACT00000011780 Ankyrin repeat domain-containing protein 41. [Source:Uniprot/SWISSPROT;Acc:Q8NAG6]
16.3204 -15.23 0.00845538 500 7 1 8 [+] picture button
ANKRD57 (1 of 4) ENSGACT00000020129 Ankyrin repeat domain-containing protein 57. [Source:Uniprot/SWISSPROT;Acc:Q53LP3]
17.5103 -13.66 0.0339235 500 1 1 4 [+] picture button
ASZ1 (2 of 2) ENSGACT00000011975 Ankyrin repeat, SAM and basic leucine zipper domain-containing protein 1 (Germ cell-specific ankyrin, SAM and basic leucine zipper domain- containing protein) (Ankyrin-like protein 1). [Source:Uniprot/SWISSPROT;Acc:Q8WWH4]
18.5858 -13.63 0.0132872 500 9 1 10 [+] picture button
AP2B1 ENSGACT00000027500 AP-2 complex subunit beta-1 (Adapter-related protein complex 2 beta-1 subunit) (Beta-adaptin) (Plasma membrane adaptor HA2/AP2 adaptin beta subunit) (Clathrin assembly protein complex 2 beta large chain) (AP105B). [Source:Uniprot/SWISSPROT;Acc:P63010]
17.1939 -13.48 0.00210329 500 4 1 5 [+] picture button
AP3S1 ENSGACT00000008224 AP-3 complex subunit sigma-1 (Adapter-related protein complex 3 sigma- 1 subunit) (Sigma-adaptin 3a) (AP-3 complex sigma-3A subunit) (Sigma- 3A-adaptin) (Clathrin-associated/assembly/adapter protein, small 3). [Source:Uniprot/SWISSPROT;Acc:Q92572]
17.0497 -13.83 0.000000090634 684 6 1 9 [+] picture button
AQP1 (1 of 2) ENSGACT00000023023 Aquaporin-1 (AQP-1) (Aquaporin-CHIP) (Water channel protein for red blood cells and kidney proximal tubule) (Urine water channel). [Source:Uniprot/SWISSPROT;Acc:P29972]
16.5472 -12.84 0.00134134 380 8 4 11 [+] picture button
ASS1 ENSGACT00000022088 Argininosuccinate synthase (EC 6.3.4.5) (Citrulline--aspartate ligase). [Source:Uniprot/SWISSPROT;Acc:P00966]
16.6007 -10.38 0.000485132 244 6 2 10 [+] picture button
ARSB ENSGACT00000020859 Arylsulfatase B precursor (EC 3.1.6.12) (ASB) (N-acetylgalactosamine- 4-sulfatase) (G4S). [Source:Uniprot/SWISSPROT;Acc:P15848]
18.9665 -20.82 0.00950051 378 5 2 13 [+] picture button
ASTE1 (1 of 2) ENSGACT00000008030 asteroid homolog 1 [Source:RefSeq_peptide;Acc:NP_054784]
16.8715 -9.72 0.00000731668 500 5 1 8 [+] picture button
ASTE1 (2 of 2) ENSGACT00000003892 asteroid homolog 1 [Source:RefSeq_peptide;Acc:NP_054784]
17.7312 -16.79 0.0280336 500 3 1 4 [+] picture button
ABCF2 ENSGACT00000006157 ATP-binding cassette sub-family F member 2 (Iron-inhibited ABC transporter 2). [Source:Uniprot/SWISSPROT;Acc:Q9UG63]
16.3078 -16.06 0.0146305 459 6 4 7 [+] picture button
ATPBD1B ENSGACT00000009604 ATP-binding domain 1 family member B. [Source:Uniprot/SWISSPROT;Acc:Q9H9Y4]
16.5232 -12.52 0.00607886 539 3 1 5 [+] picture button
AGBL5 ENSGACT00000007353 ATP/GTP binding protein-like 5 isoform 3 [Source:RefSeq_peptide;Acc:NP_001030584]
17.1939 -12.9 0.00778986 500 3 1 4 [+] picture button
B4GALT4 ENSGACT00000027406 Beta-1,4-galactosyltransferase 4 (EC 2.4.1.-) (Beta-1,4-GalTase 4) (Beta4Gal-T4) (b4Gal-T4) (UDP-galactose:beta-N-acetylglucosamine beta- 1,4-galactosyltransferase 4) (UDP-Gal:beta-GlcNAc beta-1,4- galactosyltransferase 4) [Includes: N-acetyllactosamine s [Source:Uniprot/SWISSPROT;Acc:O60513]
17.1939 -13.65 0.00380993 500 9 2 14 [+] picture button
SNTB2 ENSGACT00000002783 Beta-2-syntrophin (59 kDa dystrophin-associated protein A1 basic component 2) (Syntrophin 3) (SNT3) (Syntrophin-like) (SNTL). [Source:Uniprot/SWISSPROT;Acc:Q13425]
16.4815 -11.16 0.00875909 500 5 1 6 [+] picture button
ARRB2 (2 of 2) ENSGACT00000002375 Beta-arrestin-2 (Arrestin beta 2). [Source:Uniprot/SWISSPROT;Acc:P32121]
16.6117 -13.37 0.000127525 500 5 2 6 [+] picture button
CTNNBL1 ENSGACT00000006207 Beta-catenin-like protein 1 (Nuclear-associated protein) (NAP) (Testis development protein NYD-SP19). [Source:Uniprot/SWISSPROT;Acc:Q8WYA6]
18.3327 -21.71 0.0165938 604 3 1 4 [+] picture button
CTNNBL1 ENSGACT00000006215 Beta-catenin-like protein 1 (Nuclear-associated protein) (NAP) (Testis development protein NYD-SP19). [Source:Uniprot/SWISSPROT;Acc:Q8WYA6]
18.4347 -21.71 0.0151737 567 3 1 5 [+] picture button
OPN1SW ENSGACT00000000941 Blue-sensitive opsin (BOP) (Blue cone photoreceptor pigment). [Source:Uniprot/SWISSPROT;Acc:P03999]
16.3733 -16.22 0.00776205 235 4 1 12 [+] picture button
BDNF ENSGACT00000020491 Brain-derived neurotrophic factor precursor (BDNF) (Abrineurin). [Source:Uniprot/SWISSPROT;Acc:P23560]
17.0385 -10.59 0.00189909 500 6 9 12 [+] picture button
BIN2 ENSGACT00000014421 Bridging integrator 2 (Breast cancer-associated protein 1). [Source:Uniprot/SWISSPROT;Acc:Q9UBW5]
16.3733 -12.25 0.00907652 271 7 2 12 [+] picture button
BRPF3 (1 of 2) ENSGACT00000006531 Bromodomain and PHD finger-containing protein 3. [Source:Uniprot/SWISSPROT;Acc:Q9ULD4]
16.3342 -17.02 0.0145611 500 3 2 3 [+] picture button
BTBD14B (1 of 2) ENSGACT00000016888 BTB/POZ domain-containing protein 14B (Nucleus accumbens-1) (NAC-1). [Source:Uniprot/SWISSPROT;Acc:Q96RE7]
17.3854 -15.88 0.00337524 500 5 2 6 [+] picture button
KCTD9 ENSGACT00000016464 BTB/POZ domain-containing protein KCTD9. [Source:Uniprot/SWISSPROT;Acc:Q7L273]
16.5825 -14.57 0.00958235 500 7 2 12 [+] picture button
DENND4A ENSGACT00000006461 C-myc promoter-binding protein (DENN domain-containing protein 4A). [Source:Uniprot/SWISSPROT;Acc:Q7Z401]
17.6444 -13.82 0.00286273 365 7 2 13 [+] picture button
CDH7 ENSGACT00000006458 Cadherin-7 precursor. [Source:Uniprot/SWISSPROT;Acc:Q9ULB5]
16.9181 -14.39 0.017056 500 5 2 4 [+] picture button
CNN3 ENSGACT00000000125 Calponin-3 (Calponin, acidic isoform). [Source:Uniprot/SWISSPROT;Acc:Q15417]
19.2356 -18.19 0.00000204061 500 5 4 9 [+] picture button
CNOT3 (1 of 2) ENSGACT00000015235 CCR4-NOT transcription complex subunit 3 (CCR4-associated factor 3) (Leukocyte receptor cluster member 2). [Source:Uniprot/SWISSPROT;Acc:O75175]
16.5851 -15.93 0.000653184 500 4 4 5 [+] picture button
CD302 ENSGACT00000007575 CD302 antigen precursor (C-type lectin domain family 13 member A) (C- type lectin BIMLEC) (Type I transmembrane C-type lectin receptor DCL- 1). [Source:Uniprot/SWISSPROT;Acc:Q8IX05]
17.276 -16.39 0.00876867 677 5 1 9 [+] picture button
CD81 (1 of 2) ENSGACT00000016752 CD81 antigen (26 kDa cell surface protein TAPA-1) (Target of the antiproliferative antibody 1) (Tetraspanin-28) (Tspan-28). [Source:Uniprot/SWISSPROT;Acc:P60033]
16.8715 -16.62 0.00341111 500 5 1 5 [+] picture button
MNAT1 ENSGACT00000011213 CDK-activating kinase assembly factor MAT1 (RING finger protein MAT1) (Menage a trois) (CDK7/cyclin H assembly factor) (p36) (p35) (Cyclin G1-interacting protein) (RING finger protein 66). [Source:Uniprot/SWISSPROT;Acc:P51948]
16.7144 -15.7 0.00757926 232 5 2 8 [+] picture button
NP_075384.3 ENSGACT00000008929 CDNA FLJ12949 fis, clone NT2RP2005336, weakly similar to TRICHOHYALIN. [Source:Uniprot/SPTREMBL;Acc:Q9H978]
18.5524 -17.93 0.0136842 500 6 1 6 [+] picture button
Q2T9F4_HUMAN ENSGACT00000017717 CDNA FLJ25037 fis, clone CBL03066. [Source:Uniprot/SPTREMBL;Acc:Q96LV5]
17.3698 -16.48 0.0382753 500 5 1 5 [+] picture button
NP_065930.2 ENSGACT00000024964 CDNA FLJ31980 fis, clone NT2RP7008487, weakly similar to TRICHOHYALIN. [Source:Uniprot/SPTREMBL;Acc:Q96MS1]
17.0864 -16.82 0.000040717 500 6 1 7 [+] picture button

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Download table: GFF TXT
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