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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Gasterosteus aculeatus and fru-miR-183

916 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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MAP4K5 ENSGACT00000015708 Mitogen-activated protein kinase kinase kinase kinase 5 (EC 2.7.11.1) (MAPK/ERK kinase kinase kinase 5) (MEK kinase kinase 5) (MEKKK 5) (Kinase homologous to SPS1/STE20) (KHS). [Source:Uniprot/SWISSPROT;Acc:Q9Y4K4]
16.2565 -13.83 0.0000000910439 500 6 3 7 [+] picture button
EGR1 ENSGACT00000024011 Early growth response protein 1 (EGR-1) (Krox-24 protein) (Transcription factor Zif268) (Nerve growth factor-induced protein A) (NGFI-A) (Transcription factor ETR103) (Zinc finger protein 225) (AT225). [Source:Uniprot/SWISSPROT;Acc:P18146]
17.8608 -19.17 0.000000808587 500 7 4 13 [+] picture button
ENSGACT00000013496 Homolog of Homo sapiens "Splice Isoform 8 of Zinc finger protein 41 [Source:IPI;Acc:IPI00221200]"Homolog of Homo sapiens "Splice Isoform 8 of Zinc finger protein 41 [Source:IPI;Acc:IPI00221200]" BY ORTHOLOGY TO:SINFRUT00000150618
17.9677 -24.57 0.000001 500 7 2 5 [+] picture button
EDEM1 ENSGACT00000016290 ER degradation-enhancing alpha-mannosidase-like 1. [Source:Uniprot/SWISSPROT;Acc:Q92611]
16.9153 -15.26 0.00000160262 500 7 4 11 [+] picture button
FAT ENSGACT00000022345 Cadherin-related tumor suppressor homolog precursor (Protein fat homolog). [Source:Uniprot/SWISSPROT;Acc:Q14517]
16.8322 -19.19 0.00000171907 500 5 5 6 [+] picture button
RFX2 ENSGACT00000010040 DNA-binding protein RFX2. [Source:Uniprot/SWISSPROT;Acc:P48378]
17.326 -18.93 0.00000240319 500 9 5 11 [+] picture button
DOPEY1 ENSGACT00000006837 dopey family member 1 [Source:RefSeq_peptide;Acc:NP_055833]
17.4222 -23.37 0.00000293688 278 7 8 10 [+] picture button
RAB40C ENSGACT00000025483 Ras-related protein Rab-40C (SOCS box-containing protein RAR3) (Rar- like protein). [Source:Uniprot/SWISSPROT;Acc:Q96S21]
15.5346 -21.63 0.0000040318 500 7 4 11 [+] picture button
PGAM5 ENSGACT00000017141 Bcl-XL-binding protein v68 [Source:RefSeq_peptide;Acc:NP_612642]
18.0106 -20.52 0.00000483283 500 7 2 10 [+] picture button
ZFPM2 ENSGACT00000006324 Zinc finger protein ZFPM2 (Zinc finger protein multitype 2) (Friend of GATA protein 2) (FOG-2) (hFOG-2). [Source:Uniprot/SWISSPROT;Acc:Q8WW38]
16.3264 -17.11 0.00000641027 500 9 14 18 [+] picture button
SRP14 ENSGACT00000008409 Signal recognition particle 14 kDa protein (SRP14) (18 kDa Alu RNA- binding protein). [Source:Uniprot/SWISSPROT;Acc:P37108]
15.5369 -14.77 0.00000689959 532 1 1 1 [+] picture button
ATP6V0A2 (2 of 2) ENSGACT00000022686 Vacuolar proton translocating ATPase 116 kDa subunit a isoform 2 (V- ATPase 116 kDa isoform a2) (TJ6). [Source:Uniprot/SWISSPROT;Acc:Q9Y487]
16.4704 -19.38 0.0000122532 500 11 4 20 [+] picture button
SNX4 ENSGACT00000025663 Sorting nexin-4. [Source:Uniprot/SWISSPROT;Acc:O95219]
18.6059 -18.87 0.0000136838 435 6 1 4 [+] picture button
CLASP2 ENSGACT00000007303 CLIP-associating protein 2 (Cytoplasmic linker-associated protein 2) (hOrbit2). [Source:Uniprot/SWISSPROT;Acc:O75122]
15.5079 -13.18 0.0000139552 500 5 2 4 [+] picture button
C6orf166 (2 of 2) ENSGACT00000012148 Uncharacterized protein C6orf166. [Source:Uniprot/SWISSPROT;Acc:Q53H80]
17.1827 -18.79 0.0000154411 552 2 4 2 [+] picture button
SNX4 ENSGACT00000025666 Sorting nexin-4. [Source:Uniprot/SWISSPROT;Acc:O95219]
18.508 -18.87 0.000017131 455 7 1 7 [+] picture button
CXXC6 ENSGACT00000010352 CXXC-type zinc finger protein 6 (Leukemia-associated protein with a CXXC domain). [Source:Uniprot/SWISSPROT;Acc:Q8NFU7]
17.2191 -16 0.0000184824 500 9 6 10 [+] picture button
HPCAL1 ENSGACT00000012728 Hippocalcin-like protein 1 (Visinin-like protein 3) (VILIP-3) (Calcium-binding protein BDR-1) (HLP2). [Source:Uniprot/SWISSPROT;Acc:P37235]
15.9274 -18.22 0.0000224128 576 7 1 7 [+] picture button
SNX4 ENSGACT00000025660 Sorting nexin-4. [Source:Uniprot/SWISSPROT;Acc:O95219]
18.3409 -18.87 0.0000251005 500 4 1 2 [+] picture button
ELK3 ENSGACT00000025364 ETS domain-containing protein Elk-3 (ETS-related protein NET) (ETS- related protein ERP) (SRF accessory protein 2) (SAP-2). [Source:Uniprot/SWISSPROT;Acc:P41970]
16.7913 -18 0.0000256939 500 2 1 4 [+] picture button
ENSGACT00000025521 protein-kinase, interferon-inducible double stranded RNA dependent inhibitor [Source:RefSeq_peptide;Acc:NP_571705]protein-kinase, interferon-inducible double stranded RNA dependent inhibitor [Source:RefSeq_peptide;Acc:NP_571705] BY ORTHOLOGY TO:ENSDART00000026098
17.0147 -21.55 0.0000261719 500 3 1 3 [+] picture button
SNX3 ENSGACT00000011810 Sorting nexin-3 (Protein SDP3). [Source:Uniprot/SWISSPROT;Acc:O60493]
16.8461 -17.93 0.0000261876 624 3 3 3 [+] picture button
TMEM41A (2 of 2) ENSGACT00000008026 Transmembrane protein 41A precursor. [Source:Uniprot/SWISSPROT;Acc:Q96HV5]
16.4704 -17.77 0.0000262588 500 11 1 14 [+] picture button
KIAA1539 ENSGACT00000018091 KIAA1539 (KIAA1539), mRNA [Source:RefSeq_dna;Acc:NM_025182]
16.9664 -22.93 0.0000290444 500 6 4 8 [+] picture button
LOC729956 ENSGACT00000014154 RIKEN cDNA D430041B17 gene [Source:MarkerSymbol;Acc:MGI:3605641]RIKEN cDNA D430041B17 gene [Source:MarkerSymbol;Acc:MGI:3605641] BY ORTHOLOGY TO:ENSMUST00000066041
16.3031 -16.67 0.0000318053 500 4 5 4 [+] picture button
TEGT ENSGACT00000015469 Bax inhibitor 1 (BI-1) (Testis-enhanced gene transcript) (Transmembrane BAX inhibitor motif-containing protein 6). [Source:Uniprot/SWISSPROT;Acc:P55061]
16.1347 -16.97 0.0000319672 828 2 4 2 [+] picture button
KCNJ12 (1 of 2) ENSGACT00000011312 ATP-sensitive inward rectifier potassium channel 12 (Potassium channel, inwardly rectifying subfamily J member 12) (Inward rectifier K(+) channel Kir2.2) (Kir2.2v) (IRK2). [Source:Uniprot/SWISSPROT;Acc:Q14500]
17.0052 -18.21 0.0000320875 500 5 5 5 [+] picture button
SH3PXD2A ENSGACT00000021571 SH3 and PX domain-containing protein 2A (SH3 multiple domains protein 1) (Five SH3 domain-containing protein) (Adaptor protein TKS5). [Source:Uniprot/SWISSPROT;Acc:Q5TCZ1]
16.9385 -16.91 0.0000353862 500 8 4 8 [+] picture button
KATNA1 ENSGACT00000008881 Katanin p60 ATPase-containing subunit A1 (EC 3.6.4.3) (Katanin p60 subunit A1) (p60 katanin). [Source:Uniprot/SWISSPROT;Acc:O75449]
17.778 -19.46 0.0000372217 333 6 2 14 [+] picture button
PAG1 ENSGACT00000004527 Phosphoprotein associated with glycosphingolipid-enriched microdomains 1 (Transmembrane adapter protein PAG) (Csk-binding protein) (Transmembrane phosphoprotein Cbp). [Source:Uniprot/SWISSPROT;Acc:Q9NWQ8]
17.433 -23.34 0.0000380672 500 6 1 9 [+] picture button
SEPT3 ENSGACT00000021145 Neuronal-specific septin-3. [Source:Uniprot/SWISSPROT;Acc:Q9UH03]
16.3635 -18.77 0.0000402943 500 4 1 5 [+] picture button
DNMT1 ENSGACT00000018207 DNA (cytosine-5)-methyltransferase 1 (EC 2.1.1.37) (Dnmt1) (DNA methyltransferase HsaI) (DNA MTase HsaI) (MCMT) (M.HsaI). [Source:Uniprot/SWISSPROT;Acc:P26358]
15.8384 -18.03 0.0000447065 155 4 7 5 [+] picture button
LGI2 (1 of 2) ENSGACT00000025941 Leucine-rich repeat LGI family member 2 precursor (Leucine-rich glioma-inactivated protein 2) (LGI1-like protein 2). [Source:Uniprot/SWISSPROT;Acc:Q8N0V4]
16.1058 -16.81 0.0000457677 500 3 1 3 [+] picture button
GRIA1 (2 of 2) ENSGACT00000024484 Glutamate receptor 1 precursor (GluR-1) (GluR-A) (GluR-K1) (Glutamate receptor ionotropic, AMPA 1) (AMPA-selective glutamate receptor 1). [Source:Uniprot/SWISSPROT;Acc:P42261]
16.9991 -20.92 0.0000489472 500 7 7 11 [+] picture button
NP_776190.1 ENSGACT00000011856 P18SRP protein [Source:RefSeq_peptide;Acc:NP_776190]
15.6148 -15.3 0.0000547897 500 4 1 5 [+] picture button
TNPO3 ENSGACT00000000924 Transportin-3 (Transportin-SR) (TRN-SR) (Importin-12). [Source:Uniprot/SWISSPROT;Acc:Q9Y5L0]
18.0925 -20.55 0.0000578712 618 5 2 5 [+] picture button
IMPDH2 ENSGACT00000007588 Inosine-5'-monophosphate dehydrogenase 2 (EC 1.1.1.205) (IMP dehydrogenase 2) (IMPDH-II) (IMPD 2). [Source:Uniprot/SWISSPROT;Acc:P12268]
17.4965 -20.96 0.0000601041 343 7 5 11 [+] picture button
CARD9 ENSGACT00000020823 Caspase recruitment domain-containing protein 9 (hCARD9). [Source:Uniprot/SWISSPROT;Acc:Q9H257]
16.3861 -18.2 0.0000605746 500 7 3 8 [+] picture button
MLL3 ENSGACT00000017731 Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog (EC 2.1.1.43) (Histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3) (Homologous to ALR protein). [Source:Uniprot/SWISSPROT;Acc:Q8NEZ4]
17.099 -20.33 0.0000655505 475 4 4 5 [+] picture button
BTG1 ENSGACT00000026220 BTG1 protein (B-cell translocation gene 1 protein). [Source:Uniprot/SWISSPROT;Acc:P62324]
15.476 -11.41 0.0000659324 500 6 4 10 [+] picture button
BCL7B ENSGACT00000010140 B-cell CLL/lymphoma 7 protein family member B. [Source:Uniprot/SWISSPROT;Acc:Q9BQE9]
17.0383 -13.41 0.000069791 500 3 2 3 [+] picture button
GCA ENSGACT00000018398 Grancalcin. [Source:Uniprot/SWISSPROT;Acc:P28676]
15.5396 -19.45 0.0000711902 609 5 3 5 [+] picture button
ARL6IP2 (1 of 2) ENSGACT00000013814 ADP-ribosylation factor-like 6 interacting protein 2 [Source:RefSeq_peptide;Acc:NP_071769]
16.1565 -17.79 0.0000722166 500 7 5 8 [+] picture button
MGAT5B (2 of 2) ENSGACT00000017779 beta(1,6)-N-acetylglucosaminyltransferase V isoform 1 [Source:RefSeq_peptide;Acc:NP_653278]
16.2562 -20.17 0.0000738 391 8 4 11 [+] picture button
SFRS11 (2 of 2) ENSGACT00000023638 Splicing factor arginine/serine-rich 11 (Arginine-rich 54 kDa nuclear protein) (p54). [Source:Uniprot/SWISSPROT;Acc:Q05519]
16.395 -16 0.0000784187 379 7 2 9 [+] picture button
RGS19 ENSGACT00000022680 Regulator of G-protein signaling 19 (RGS19) (G-alpha-interacting protein) (GAIP protein). [Source:Uniprot/SWISSPROT;Acc:P49795]
15.6679 -20.29 0.0000903592 500 3 3 5 [+] picture button
C4orf23 ENSGACT00000025706 U383_HUMAN Isoform 2 of Q8IYL2 - Homo sapiens (Human) [Source:Uniprot/Varsplic;Acc:Q8IYL2-2]
15.5615 -16.06 0.0000938816 500 5 1 6 [+] picture button
SLC15A4 ENSGACT00000016156 solute carrier family 15, member 4 [Source:RefSeq_peptide;Acc:NP_663623]
16.0426 -19.05 0.000107096 500 8 2 7 [+] picture button
PHKA2 ENSGACT00000019932 Phosphorylase b kinase regulatory subunit alpha, liver isoform (Phosphorylase kinase alpha L subunit). [Source:Uniprot/SWISSPROT;Acc:P46019]
16.0145 -14.19 0.000124682 622 5 2 6 [+] picture button
C10orf72 (2 of 2) ENSGACT00000009247 Uncharacterized protein C10orf72 precursor. [Source:Uniprot/SWISSPROT;Acc:Q8IW00]
17.3345 -15.53 0.000128351 373 7 2 13 [+] picture button

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Download table: GFF TXT
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