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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Gasterosteus aculeatus and fru-miR-1

665 hits found.


Page 1 of 14
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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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P25A_HUMAN ENSGACT00000011381 Tubulin polymerization-promoting protein (TPPP) (25 kDa brain-specific protein) (p25-alpha) (p24) (p25). [Source:Uniprot/SWISSPROT;Acc:O94811]
16.3773 -14.58 0.00000000271308 500 9 9 14 [+] picture button
MEOX2 ENSGACT00000016872 Homeobox protein MOX-2 (Mesenchyme homeobox 2) (Growth arrest-specific homeobox). [Source:Uniprot/SWISSPROT;Acc:P50222]
16.28 -13.9 0.00000003623 500 5 10 11 [+] picture button
SFRS9 ENSGACT00000022403 Splicing factor, arginine/serine-rich 9 (Pre-mRNA-splicing factor SRp30C). [Source:Uniprot/SWISSPROT;Acc:Q13242]
16.3342 -15.95 0.0000000731575 500 5 2 6 [+] picture button
NCL ENSGACT00000011886 Nucleolin (Protein C23). [Source:Uniprot/SWISSPROT;Acc:P19338]
18.2202 -18.74 0.0000000802243 349 6 11 12 [+] picture button
AP3S1 ENSGACT00000008224 AP-3 complex subunit sigma-1 (Adapter-related protein complex 3 sigma- 1 subunit) (Sigma-adaptin 3a) (AP-3 complex sigma-3A subunit) (Sigma- 3A-adaptin) (Clathrin-associated/assembly/adapter protein, small 3). [Source:Uniprot/SWISSPROT;Acc:Q92572]
17.0497 -13.83 0.000000090634 684 6 1 9 [+] picture button
NEDD9 ENSGACT00000003060 Enhancer of filamentation 1 (HEF1) (CRK-associated substrate-related protein) (CAS-L) (CasL) (p105) (Protein NEDD9) (Renal carcinoma antigen NY-REN-12). [Source:Uniprot/SWISSPROT;Acc:Q14511]
17.1943 -11.67 0.000000146323 500 7 3 11 [+] picture button
WDR48 ENSGACT00000016749 WD repeat protein 48 (WD repeat endosomal protein) (p80). [Source:Uniprot/SWISSPROT;Acc:Q8TAF3]
18.1088 -17.46 0.00000016152 500 6 4 7 [+] picture button
MON2 ENSGACT00000004759 MON2 homolog [Source:RefSeq_peptide;Acc:NP_055841]
16.4625 -14.93 0.000000240968 500 5 12 7 [+] picture button
LMBR1 ENSGACT00000005150 Limb region 1 protein homolog (Differentiation-related gene 14 protein). [Source:Uniprot/SWISSPROT;Acc:Q8WVP7]
18.3463 -18.31 0.000000428826 500 5 4 7 [+] picture button
YIPF5 ENSGACT00000027451 Protein YIPF5 (YIP1 family member 5) (YPT-interacting protein 1 A) (Five-pass transmembrane protein localizing in the Golgi apparatus and the endoplasmic reticulum 5) (Smooth muscle cell-associated protein 5) (SMAP-5). [Source:Uniprot/SWISSPROT;Acc:Q969M3]
18.0788 -14.04 0.000000502903 97 1 2 2 [+] picture button
MOCOS ENSGACT00000004041 Molybdenum cofactor sulfurase (EC 4.4.-.-) (MoCo sulfurase) (MOS) (HMCS). [Source:Uniprot/SWISSPROT;Acc:Q96EN8]
17.3013 -17.36 0.000000582918 500 3 2 5 [+] picture button
SNX14 (2 of 2) ENSGACT00000015512 Sorting nexin-14. [Source:Uniprot/SWISSPROT;Acc:Q9Y5W7]
17.1939 -13.75 0.000000603964 500 4 2 5 [+] picture button
DDX5 (2 of 2) ENSGACT00000025500 Probable ATP-dependent RNA helicase DDX5 (EC 3.6.1.-) (DEAD box protein 5) (RNA helicase p68). [Source:Uniprot/SWISSPROT;Acc:P17844]
16.3733 -11.36 0.000000971838 289 11 12 20 [+] picture button
XKR9 ENSGACT00000003699 XK-related protein 9. [Source:Uniprot/SWISSPROT;Acc:Q5GH70]
16.3342 -13.35 0.00000150589 500 7 2 7 [+] picture button
CNN3 ENSGACT00000000125 Calponin-3 (Calponin, acidic isoform). [Source:Uniprot/SWISSPROT;Acc:Q15417]
19.2356 -18.19 0.00000204061 500 5 4 9 [+] picture button
DDX5 (1 of 2) ENSGACT00000009367 Probable ATP-dependent RNA helicase DDX5 (EC 3.6.1.-) (DEAD box protein 5) (RNA helicase p68). [Source:Uniprot/SWISSPROT;Acc:P17844]
19.8981 -12.5 0.00000284863 297 8 4 17 [+] picture button
H2AFY2 ENSGACT00000019305 Core histone macro-H2A.2 (Histone macroH2A2) (mH2A2). [Source:Uniprot/SWISSPROT;Acc:Q9P0M6]
19.3084 -16.57 0.00000313484 358 6 3 12 [+] picture button
KLHL11 (1 of 2) ENSGACT00000011667 Kelch-like protein 11 precursor. [Source:Uniprot/SWISSPROT;Acc:Q9NVR0]
17.8853 -17.24 0.00000397616 500 6 3 8 [+] picture button
DMRT2 ENSGACT00000019177 Doublesex- and mab-3-related transcription factor 2 (Doublesex-like 2 protein) (DSXL-2). [Source:Uniprot/SWISSPROT;Acc:Q9Y5R5]
16.3661 -15.27 0.00000397763 500 3 3 3 [+] picture button
PHF12 ENSGACT00000018142 PHD finger protein 12 (PHD factor 1) (Pf1). [Source:Uniprot/SWISSPROT;Acc:Q96QT6]
16.4741 -11.8 0.00000511698 500 9 6 12 [+] picture button
NECAP2 ENSGACT00000001495 Adaptin ear-binding coat-associated protein 2 (NECAP-2). [Source:Uniprot/SWISSPROT;Acc:Q9NVZ3]
16.6891 -14.09 0.00000664089 500 5 2 7 [+] picture button
CLUAP1 ENSGACT00000011528 Clusterin-associated protein 1. [Source:Uniprot/SWISSPROT;Acc:Q96AJ1]
18.8747 -17.18 0.00000711274 174 4 2 5 [+] picture button
ASTE1 (1 of 2) ENSGACT00000008030 asteroid homolog 1 [Source:RefSeq_peptide;Acc:NP_054784]
16.8715 -9.72 0.00000731668 500 5 1 8 [+] picture button
TMF1 ENSGACT00000012465 TATA element modulatory factor (TMF). [Source:Uniprot/SWISSPROT;Acc:P82094]
16.2947 -13.55 0.00000810979 313 10 2 14 [+] picture button
TLR3 ENSGACT00000022330 Toll-like receptor 3 precursor (CD283 antigen). [Source:Uniprot/SWISSPROT;Acc:O15455]
16.4604 -14.36 0.0000101694 388 10 2 12 [+] picture button
E2F5 ENSGACT00000022514 Transcription factor E2F5 (E2F-5). [Source:Uniprot/SWISSPROT;Acc:Q15329]
18.0535 -18.2 0.0000124521 500 9 4 13 [+] picture button
ENSGACT00000017086 hypothetical protein LOC565155 [Source:RefSeq_peptide;Acc:NP_001038538]hypothetical protein LOC565155 [Source:RefSeq_peptide;Acc:NP_001038538] BY ORTHOLOGY TO:ENSDART00000023550
19.2158 -15.59 0.0000141793 234 4 3 7 [+] picture button
DOCK9 (2 of 2) ENSGACT00000018294 Dedicator of cytokinesis protein 9 (Cdc42 guanine nucleotide exchange factor zizimin-1). [Source:Uniprot/SWISSPROT;Acc:Q9BZ29]
18.0333 -14.52 0.0000154325 500 4 1 8 [+] picture button
TF ENSGACT00000017989 Serotransferrin precursor (Transferrin) (Siderophilin) (Beta-1-metal- binding globulin). [Source:Uniprot/SWISSPROT;Acc:P02787]
18.0652 -17.26 0.0000170193 302 9 2 16 [+] picture button
MTMR7 (1 of 2) ENSGACT00000024640 Myotubularin-related protein 7 (EC 3.1.3.-). [Source:Uniprot/SWISSPROT;Acc:Q9Y216]
16.9045 -15.03 0.0000172954 500 8 3 9 [+] picture button
ASPM ENSGACT00000007826 Abnormal spindle-like microcephaly-associated protein (Abnormal spindle protein homolog) (Asp homolog). [Source:Uniprot/SWISSPROT;Acc:Q8IZT6]
17.8514 -13.71 0.0000175345 90 4 3 6 [+] picture button
C9orf19 ENSGACT00000011752 Golgi-associated plant pathogenesis-related protein 1 (Golgi- associated PR-1 protein) (GAPR-1) (Glioma pathogenesis-related protein 2) (GliPR 2). [Source:Uniprot/SWISSPROT;Acc:Q9H4G4]
17.062 -13.23 0.0000185263 435 9 1 13 [+] picture button
SF3A2 ENSGACT00000020165 Splicing factor 3A subunit 2 (Spliceosome-associated protein 62) (SAP 62) (SF3a66). [Source:Uniprot/SWISSPROT;Acc:Q15428]
17.1692 -13.34 0.0000225218 156 4 2 6 [+] picture button
TRIM2 ENSGACT00000022251 Tripartite motif-containing protein 2 (RING finger protein 86). [Source:Uniprot/SWISSPROT;Acc:Q9C040]
16.9922 -14.21 0.0000285199 500 7 3 9 [+] picture button
ENSGACT00000003101 Homolog of Homo sapiens "Myosin phosphatase-Rho interacting protein [Source:UniGene;Acc:Hs.462341]"Homolog of Homo sapiens "Myosin phosphatase-Rho interacting protein [Source:UniGene;Acc:Hs.462341]" BY ORTHOLOGY TO:SINFRUT00000139211
16.761 -16.4 0.0000289401 599 5 2 4 [+] picture button
SMARCA4 (2 of 2) ENSGACT00000021206 Probable global transcription activator SNF2L4 (EC 3.6.1.-) (ATP- dependent helicase SMARCA4) (SNF2-beta) (BRG-1 protein) (Mitotic growth and transcription activator) (Brahma protein homolog 1) (SWI/SNF-related matrix-associated actin-dependent regulator [Source:Uniprot/SWISSPROT;Acc:P51532]
16.5491 -12.78 0.0000340449 500 10 1 10 [+] picture button
DAK ENSGACT00000024912 Dihydroxyacetone kinase (EC 2.7.1.29) (Glycerone kinase) (DHA kinase). [Source:Uniprot/SWISSPROT;Acc:Q3LXA3]
17.0564 -10.42 0.0000366071 402 6 1 8 [+] picture button
CCPG1 ENSGACT00000020961 Dyslexia susceptibility 1 candidate gene 1 protein. [Source:Uniprot/SWISSPROT;Acc:Q8WXU2]
19.269 -22.17 0.0000379886 500 7 3 9 [+] picture button
PEPD ENSGACT00000019320 Xaa-Pro dipeptidase (EC 3.4.13.9) (X-Pro dipeptidase) (Proline dipeptidase) (Prolidase) (Imidodipeptidase). [Source:Uniprot/SWISSPROT;Acc:P12955]
17.1692 -11.4 0.0000396576 165 3 3 6 [+] picture button
NP_065930.2 ENSGACT00000024964 CDNA FLJ31980 fis, clone NT2RP7008487, weakly similar to TRICHOHYALIN. [Source:Uniprot/SPTREMBL;Acc:Q96MS1]
17.0864 -16.82 0.000040717 500 6 1 7 [+] picture button
LRMP ENSGACT00000025282 Lymphoid-restricted membrane protein (Protein Jaw1). [Source:Uniprot/SWISSPROT;Acc:Q12912]
16.8519 -16.83 0.0000412416 711 5 3 7 [+] picture button
MMD ENSGACT00000019080 Monocyte to macrophage differentiation protein (Progestin and adipoQ receptor family member XI). [Source:Uniprot/SWISSPROT;Acc:Q15546]
18.2826 -12.92 0.0000440586 500 4 3 8 [+] picture button
UNC50 ENSGACT00000019618 unc-50 homolog [Source:RefSeq_peptide;Acc:NP_054763]
16.4935 -12.55 0.00004852 500 2 2 2 [+] picture button
MED11 ENSGACT00000000958 mediator of RNA polymerase II transcription, subunit 11 homolog [Source:RefSeq_peptide;Acc:NP_001001683]
17.8093 -14.03 0.0000559959 500 8 2 10 [+] picture button
CRHBP (1 of 2) ENSGACT00000020837 Corticotropin-releasing factor-binding protein precursor (CRF-binding protein) (CRF-BP) (Corticotropin-releasing hormone-binding protein) (CRH-BP). [Source:Uniprot/SWISSPROT;Acc:P24387]
17.4153 -15.48 0.0000560251 412 7 1 14 [+] picture button
GLI3 ENSGACT00000006408 Zinc finger protein GLI3. [Source:Uniprot/SWISSPROT;Acc:P10071]
17.1487 -12.44 0.0000687443 500 6 11 7 [+] picture button
ORMDL2 ENSGACT00000014241 ORM1-like protein 2 (Adoplin-2). [Source:Uniprot/SWISSPROT;Acc:Q53FV1]
16.9483 -12.64 0.0000695044 426 9 3 15 [+] picture button
ZMYND10 ENSGACT00000001669 Zinc finger MYND domain-containing protein 10 (BLu protein). [Source:Uniprot/SWISSPROT;Acc:O75800]
18.0968 -20.86 0.0000745012 500 6 3 10 [+] picture button
IL6 ENSGACT00000008097 Interleukin-6 precursor (IL-6) (B-cell stimulatory factor 2) (BSF-2) (Interferon beta-2) (Hybridoma growth factor) (CTL differentiation factor) (CDF). [Source:Uniprot/SWISSPROT;Acc:P05231]
16.3342 -14.02 0.0000796784 500 6 1 9 [+] picture button
MRPS33 ENSGACT00000015125 Mitochondrial 28S ribosomal protein S33 (S33mt) (MRP-S33). [Source:Uniprot/SWISSPROT;Acc:Q9Y291]
16.3733 -10.94 0.0000845915 244 3 1 6 [+] picture button

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Download table: GFF TXT
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