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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Gasterosteus aculeatus and fru-let-7j

894 hits found.


Page 1 of 18
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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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YOD1 ENSGACT00000006146 Ubiquitin thioesterase OTU1 (EC 3.1.2.-) (OTU domain-containing protein 2) (HIV-1-induced protease 7) (HIN-7) (HsHIN7). [Source:Uniprot/SWISSPROT;Acc:Q5VVQ6]
16.5778 -19.07 0.0000000000000920453 500 4 3 9 [+] picture button
LIN28B ENSGACT00000012454 Lin-28 homolog B. [Source:Uniprot/SWISSPROT;Acc:Q6ZN17]
15.9778 -14.3 0.000000000000167919 500 4 4 6 [+] picture button
TRIM71 ENSGACT00000011014 Tripartite motif-containing protein 71 (Lin-41 homolog). [Source:Uniprot/SWISSPROT;Acc:Q2Q1W2]
16.1951 -14.87 0.000000000111674 500 8 4 7 [+] picture button
SEMA4C ENSGACT00000017316 Semaphorin-4C precursor. [Source:Uniprot/SWISSPROT;Acc:Q9C0C4]
16.7144 -10.31 0.0000000294605 500 3 4 4 [+] picture button
MYC ENSGACT00000005889 Myc proto-oncogene protein (c-Myc) (Transcription factor p64). [Source:Uniprot/SWISSPROT;Acc:P01106]
16.5441 -19.29 0.0000000734567 500 9 13 15 [+] picture button
ACSS2 ENSGACT00000013559 Acetyl-coenzyme A synthetase, cytoplasmic (EC 6.2.1.1) (Acetate--CoA ligase) (Acyl-activating enzyme) (Acetyl-CoA synthetase) (ACS) (AceCS) (Acyl-CoA synthetase short-chain family member 2). [Source:Uniprot/SWISSPROT;Acc:Q9NR19]
16.0118 -17.68 0.0000000928216 500 4 1 6 [+] picture button
NPEPL1 ENSGACT00000000634 Syntaxin-16 (Syn16). [Source:Uniprot/SWISSPROT;Acc:O14662]
16.6007 -18.34 0.0000000991459 107 2 3 3 [+] picture button
TARBP2 ENSGACT00000008823 TAR RNA-binding protein 2 (Trans-activation-responsive RNA-binding protein). [Source:Uniprot/SWISSPROT;Acc:Q15633]
15.9637 -18.52 0.0000000998851 500 3 7 6 [+] picture button
E2F5 ENSGACT00000022514 Transcription factor E2F5 (E2F-5). [Source:Uniprot/SWISSPROT;Acc:Q15329]
16.0118 -16.7 0.00000016415 500 9 4 13 [+] picture button
RDX ENSGACT00000019699 Radixin. [Source:Uniprot/SWISSPROT;Acc:P35241]
16.6408 -16.51 0.000000188192 500 8 2 9 [+] picture button
KIAA0241 ENSGACT00000007357 KIAA0241 (KIAA0241), mRNA [Source:RefSeq_dna;Acc:NM_015060]
16.6071 -19.32 0.000000299013 500 7 1 8 [+] picture button
GATM ENSGACT00000019873 Glycine amidinotransferase, mitochondrial precursor (EC 2.1.4.1) (L- arginine:glycine amidinotransferase) (Transamidinase) (AT). [Source:Uniprot/SWISSPROT;Acc:P50440]
16.0118 -13.98 0.000000333573 500 8 7 9 [+] picture button
ENSGACT00000020304 Homolog of Homo sapiens "Splice Isoform PTPS-MEB of Receptor-type tyrosine-protein phosphatase S precursor [Source:IPI;Acc:IPI00332272]"Homolog of Homo sapiens "Splice Isoform PTPS-MEB of Receptor-type tyrosine-protein phosphatase S precursor [Source:IPI;Acc:IPI00332272]" BY ORTHOLOGY TO:SINFRUT00000180296
16.6007 -13.31 0.000000419296 320 3 4 6 [+] picture button
ATP2A2 (2 of 2) ENSGACT00000017795 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 (EC 3.6.3.8) (Calcium pump 2) (SERCA2) (SR Ca(2+)-ATPase 2) (Calcium-transporting ATPase sarcoplasmic reticulum type, slow twitch skeletal muscle isoform) (Endoplasmic reticulum class 1/2 Ca(2+) ATPase). [Source:Uniprot/SWISSPROT;Acc:P16615]
16.9496 -20.43 0.000000701176 500 2 9 4 [+] picture button
ACVR1B (1 of 2) ENSGACT00000011949 Activin receptor type 1B precursor (EC 2.7.11.30) (ACTR-IB) (Serine/threonine-protein kinase receptor R2) (SKR2) (Activin receptor-like kinase 4) (ALK-4). [Source:Uniprot/SWISSPROT;Acc:P36896]
17.9737 -19.08 0.000000822493 500 7 7 9 [+] picture button
SRA1 ENSGACT00000027692 Steroid receptor RNA activator 1 (Steroid receptor RNA activator protein) (SRAP). [Source:Uniprot/SWISSPROT;Acc:Q9HD15]
16.4738 -17.89 0.000000916424 491 2 1 2 [+] picture button
HBEGF ENSGACT00000024318 Heparin-binding EGF-like growth factor precursor (HB-EGF) (HBEGF) (Diphtheria toxin receptor) (DT-R). [Source:Uniprot/SWISSPROT;Acc:Q99075]
18.1331 -20.16 0.000001 500 5 3 8 [+] picture button
ENSGACT00000013727 NOT ANNOTATED
16.8831 -16.78 0.000001 500 11 1 3 [+] picture button
NEU3 ENSGACT00000027421 Sialidase-3 (EC 3.2.1.18) (Membrane sialidase) (Ganglioside sialidase) (N-acetyl-alpha-neuraminidase 3). [Source:Uniprot/SWISSPROT;Acc:Q9UQ49]
16.5491 -13.88 0.00000148093 500 6 1 10 [+] picture button
SMOX ENSGACT00000023329 Spermine oxidase (EC 1.5.3.-) (Polyamine oxidase 1) (PAO-1) (PAOh1). [Source:Uniprot/SWISSPROT;Acc:Q9NWM0]
16.524 -19.02 0.00000188441 340 8 5 18 [+] picture button
C15orf29 ENSGACT00000010497 Uncharacterized protein C15orf29. [Source:Uniprot/SWISSPROT;Acc:Q9H079]
16.2687 -19.31 0.00000223891 552 8 5 10 [+] picture button
C4orf8 ENSGACT00000022274 Uncharacterized protein C4orf8 (Protein IT14). [Source:Uniprot/SWISSPROT;Acc:P78312]
16.6151 -18.85 0.00000234134 688 5 4 5 [+] picture button
SAMD5 ENSGACT00000015395 sterile alpha motif domain containing 5 [Source:RefSeq_peptide;Acc:NP_001025231]
16.2267 -14.36 0.00000261555 500 6 2 8 [+] picture button
KIAA0274 ENSGACT00000015251 SAC domain-containing protein 3. [Source:Uniprot/SWISSPROT;Acc:Q92562]
17.5585 -18.67 0.00000374323 310 6 1 13 [+] picture button
MARS2 ENSGACT00000023152 Methionyl-tRNA synthetase, mitochondrial precursor (EC 6.1.1.10) (Methionine--tRNA ligase 2) (Mitochondrial methionine--tRNA ligase) (MtMetRS). [Source:Uniprot/SWISSPROT;Acc:Q96GW9]
16.4416 -15.07 0.00000397864 500 2 1 3 [+] picture button
LRRC29 ENSGACT00000018323 Leucine-rich repeat-containing protein 29 (F-box/LRR-repeat protein 9) (F-box and leucine-rich repeat protein 9) (F-box protein FBL9). [Source:Uniprot/SWISSPROT;Acc:Q8WV35]
16.1192 -15.49 0.00000422148 500 3 2 3 [+] picture button
ALG8 ENSGACT00000027686 Probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3- glucosyltransferase (EC 2.4.1.-) (Dolichyl-P-Glc:Glc1Man9GlcNAc2-PP- dolichyl glucosyltransferase) (Asparagine-linked glycosylation protein 8 homolog). [Source:Uniprot/SWISSPROT;Acc:Q9BVK2]
17.3013 -15.97 0.00000456763 500 2 4 2 [+] picture button
MESDC1 ENSGACT00000016487 Mesoderm development candidate 1. [Source:Uniprot/SWISSPROT;Acc:Q9H1K6]
16.3342 -16.3 0.00000489506 500 8 5 8 [+] picture button
EIF2C1 ENSGACT00000016486 Eukaryotic translation initiation factor 2C 1 (eIF2C 1) (eIF-2C 1) (Argonaute-1) (Putative RNA-binding protein Q99). [Source:Uniprot/SWISSPROT;Acc:Q9UL18]
16.5093 -15.61 0.00000576524 500 5 2 8 [+] picture button
ANAPC7 ENSGACT00000017805 Anaphase-promoting complex subunit 7 (APC7) (Cyclosome subunit 7). [Source:Uniprot/SWISSPROT;Acc:Q9UJX3]
17.0576 -17.58 0.00000582905 500 6 1 7 [+] picture button
GRTP1 (2 of 2) ENSGACT00000004128 growth hormone regulated TBC protein 1 [Source:RefSeq_peptide;Acc:NP_078995]
17.597 -18.59 0.00000600022 404 7 3 8 [+] picture button
TMEM41A (2 of 2) ENSGACT00000008026 Transmembrane protein 41A precursor. [Source:Uniprot/SWISSPROT;Acc:Q96HV5]
16.0118 -13.9 0.00000665877 500 11 1 14 [+] picture button
MARCH6 (2 of 2) ENSGACT00000019206 E3 ubiquitin-protein ligase MARCH6 (EC 6.3.2.-) (Membrane-associated RING finger protein 6) (Membrane-associated RING-CH protein VI) (MARCH-VI) (RING finger protein 176) (Protein TEB-4) (Doa10 homolog). [Source:Uniprot/SWISSPROT;Acc:O60337]
16.6956 -17.69 0.00000794195 500 4 1 7 [+] picture button
RBM35B ENSGACT00000021637 RNA-binding protein 35B (RNA-binding motif protein 35B). [Source:Uniprot/SWISSPROT;Acc:Q9H6T0]
16.8032 -21.51 0.00000839126 500 5 2 7 [+] picture button
ALPL ENSGACT00000006060 Alkaline phosphatase, tissue-nonspecific isozyme precursor (EC 3.1.3.1) (AP-TNAP) (TNSALP) (Alkaline phosphatase liver/bone/kidney isozyme). [Source:Uniprot/SWISSPROT;Acc:P05186]
17.716 -20.86 0.00000858788 504 5 1 6 [+] picture button
SIRT4 ENSGACT00000001948 NAD-dependent deacetylase sirtuin-4 (EC 3.5.1.-) (SIR2-like protein 4). [Source:Uniprot/SWISSPROT;Acc:Q9Y6E7]
17.3314 -16.83 0.0000090791 500 8 1 10 [+] picture button
PPRC1 ENSGACT00000009710 peroxisome proliferator-activated receptor gamma, coactivator-related 1 [Source:RefSeq_peptide;Acc:NP_055877]
16.2596 -16.44 0.00000985341 322 4 4 6 [+] picture button
GBA2 ENSGACT00000025304 Non-lysosomal glucosylceramidase (EC 3.2.1.45) (NLGase) (Glucosylceramidase 2) (Beta-glucocerebrosidase 2) (Beta-glucosidase 2). [Source:Uniprot/SWISSPROT;Acc:Q9HCG7]
17.086 -14.99 0.0000102772 332 7 3 8 [+] picture button
WDR60 ENSGACT00000005244 WD repeat protein 60. [Source:Uniprot/SWISSPROT;Acc:Q8WVS4]
16.0608 -14.2 0.0000107957 500 7 1 14 [+] picture button
KCNK6 ENSGACT00000016659 Potassium channel subfamily K member 6 (Inward rectifying potassium channel protein TWIK-2) (TWIK-originated similarity sequence). [Source:Uniprot/SWISSPROT;Acc:Q9Y257]
17.7377 -13.45 0.0000112516 74 2 3 3 [+] picture button
LDLRAD3 ENSGACT00000015066 low density lipoprotein receptor class A domain containing 3 [Source:RefSeq_peptide;Acc:NP_777562]
16.6565 -17.82 0.0000113254 500 3 1 3 [+] picture button
C2orf40 ENSGACT00000003992 Esophageal cancer related gene 4 protein precursor. [Source:Uniprot/SWISSPROT;Acc:Q9H1Z8]
17.5103 -17.57 0.000012184 203 3 1 6 [+] picture button
FRMPD1 ENSGACT00000024503 FERM and PDZ domain containing 1 [Source:RefSeq_peptide;Acc:NP_055722]
17.5037 -20.63 0.0000125395 500 9 3 11 [+] picture button
VPS29 ENSGACT00000006239 Vacuolar protein sorting-associated protein 29 (Vesicle protein sorting 29) (hVPS29) (PEP11). [Source:Uniprot/SWISSPROT;Acc:Q9UBQ0]
16.885 -18.71 0.0000134699 350 6 3 10 [+] picture button
NTF3 ENSGACT00000025413 Neurotrophin-3 precursor (NT-3) (Neurotrophic factor) (HDNF) (Nerve growth factor 2) (NGF-2). [Source:Uniprot/SWISSPROT;Acc:P20783]
16.5491 -16.73 0.0000151346 500 5 8 4 [+] picture button
C14orf115 ENSGACT00000017112 Uncharacterized protein C14orf115. [Source:Uniprot/SWISSPROT;Acc:Q9H8Y1]
18.3759 -20.52 0.000016302 500 6 2 9 [+] picture button
RSAD1 ENSGACT00000014073 Radical S-adenosyl methionine domain-containing protein 1, mitochondrial precursor (EC 1.3.99.-) (Oxygen-independent coproporphyrinogen III oxidase-like protein RSAD1). [Source:Uniprot/SWISSPROT;Acc:Q9HA92]
17.624 -18.07 0.0000184239 215 4 1 6 [+] picture button
FBXL14 (1 of 2) ENSGACT00000016054 F-box/LRR-repeat protein 14 (F-box and leucine-rich repeat protein 14). [Source:Uniprot/SWISSPROT;Acc:Q8N1E6]
16.4322 -17.36 0.0000204223 500 5 4 6 [+] picture button
SOCS3 (2 of 2) ENSGACT00000003905 Suppressor of cytokine signaling 3 (SOCS-3) (Cytokine-inducible SH2 protein 3) (CIS-3) (STAT-induced STAT inhibitor 3) (SSI-3). [Source:Uniprot/SWISSPROT;Acc:O14543]
16.3696 -15.95 0.0000205119 500 4 3 5 [+] picture button
ADRB2 (1 of 2) ENSGACT00000024447 Beta-2 adrenergic receptor (Beta-2 adrenoceptor) (Beta-2 adrenoreceptor). [Source:Uniprot/SWISSPROT;Acc:P07550]
15.9043 -15.88 0.0000210979 500 5 2 7 [+] picture button

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Download table: GFF TXT
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