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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Danio rerio and dre-miR-130a

849 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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zgc:153017 ENSDART00000084381 hypothetical protein LOC568207 [Source:RefSeq_peptide;Acc:NP_001070641]
16.043 -14.83 0.0000000237054 619 10 4 16 [+] picture button
rtcd1 ENSDART00000021666 RNA terminal phosphate cyclase domain 1 [Source:RefSeq_peptide;Acc:NP_955830]
16.9664 -15.85 0.0000000593929 747 7 3 7 [+] picture button
zgc:101524 ENSDART00000011922 Speckle-type POZ protein-like A (HIB homolog 2). [Source:Uniprot/SWISSPROT;Acc:Q5BL35]
16.3131 -20.27 0.000000127772 1064 6 1 6 [+] picture button
rbpms2 ENSDART00000024062 Cytoplasmic polyadenylation element-binding protein 1 (CPE-binding protein 1) (CPE-BP1) (CPEB-1) (Protein Zorba) (Zebrafish orb-type a) (ZOR-1) (Orb/CPEB-related RNA-binding protein). [Source:Uniprot/SWISSPROT;Acc:Q9YGX5]
17.4495 -19.42 0.000000208204 1068 6 9 7 [+] picture button
hoxa3a ENSDART00000052633 Homeobox protein Hox-A3a. [Source:Uniprot/SWISSPROT;Acc:Q8AWZ2]
16.5865 -12.46 0.000000334752 719 11 4 14 [+] picture button
fabp2 ENSDART00000027973 fatty acid binding protein 2, intestinal [Source:RefSeq_peptide;Acc:NP_571506]
16.8281 -14.78 0.000000677828 205 8 2 20 [+] picture button
si:ch211-221n23.1 ENSDART00000056135 si:ch211-221n23.1 [Source:RefSeq_peptide;Acc:NP_001076421]
17.0706 -14.03 0.000000683861 700 5 9 10 [+] picture button
psap ENSDART00000102618 prosaposin [Source:RefSeq_peptide;Acc:NP_571958]
16.132 -13.86 0.000000769944 700 7 6 10 [+] picture button
parp3 ENSDART00000022949 poly (ADP-ribose) polymerase family, member 3 [Source:RefSeq_peptide;Acc:NP_956795]
16.8879 -11.61 0.000000942003 788 4 5 5 [+] picture button
emx2 ENSDART00000058036 empty spiracles homeobox 2 [Source:RefSeq_peptide;Acc:NP_571355]
17.058 -16.27 0.00000114922 660 8 8 12 [+] picture button
arpc2 ENSDART00000099803 actin related protein 2/3 complex, subunit 2 [Source:RefSeq_peptide;Acc:NP_997864]
16.764 -9.72 0.00000201119 700 9 1 12 [+] picture button
zgc:55908 ENSDART00000005653 hypothetical protein LOC393152 [Source:RefSeq_peptide;Acc:NP_956477]
16.2827 -17.44 0.00000208185 700 7 1 11 [+] picture button
si:ch211-134n17.1 ENSDART00000078459 hypothetical protein LOC566642 [Source:RefSeq_peptide;Acc:NP_001038577]
16.179 -15.45 0.00000240721 700 8 9 13 [+] picture button
LOC564629 ENSDART00000081316 PAB-dependent poly(A)-specific ribonuclease subunit 3 (hPan3). [Source:Uniprot/SWISSPROT;Acc:Q58A45]PAB-dependent poly(A)-specific ribonuclease subunit 3 (hPan3). [Source:Uniprot/SWISSPROT;Acc:Q58A45] BY ORTHOLOGY TO:ENST00000380958
16.1387 -13.53 0.00000364192 700 7 14 9 [+] picture button
tdh ENSDART00000025509 L-threonine dehydrogenase [Source:RefSeq_peptide;Acc:NP_998410]
16.1303 -15.95 0.00000619929 876 6 3 6 [+] picture button
wu:fk14e08 ENSDART00000056081 sulfatase FP1c [Source:RefSeq_peptide;Acc:NP_001003846]
16.2356 -16.36 0.00000620767 941 4 4 6 [+] picture button
gpr98 ENSDART00000008043 G-protein coupled receptor 98 precursor (Monogenic audiogenic seizure susceptibility protein 1 homolog) (Very large G-protein coupled receptor 1). [Source:Uniprot/SWISSPROT;Acc:Q6JAN0]
17.624 -12.02 0.00000634416 254 5 8 12 [+] picture button
LOC564424 ENSDART00000089870 Sterol O-acyltransferase 1 (EC 2.3.1.26) (Cholesterol acyltransferase 1) (Acyl coenzyme A:cholesterol acyltransferase 1) (ACAT-1). [Source:Uniprot/SWISSPROT;Acc:P35610]Sterol O-acyltransferase 1 (EC 2.3.1.26) (Cholesterol acyltransferase 1) (Acyl coenzyme A:cholesterol acyltransferase 1) (ACAT-1). [Source:Uniprot/SWISSPROT;Acc:P35610] BY ORTHOLOGY TO:ENSOANT00000001516
17.884 -18.01 0.00000763508 700 8 1 12 [+] picture button
nudt9 ENSDART00000103744 nudix (nucleoside diphosphate linked moiety X)-type motif 9 [Source:RefSeq_peptide;Acc:NP_998517]
16.9511 -15.23 0.00000777568 378 11 2 24 [+] picture button
gap43 ENSDART00000025036 growth associated protein 43 [Source:RefSeq_peptide;Acc:NP_571416]
17.718 -19.22 0.00000942136 700 7 2 14 [+] picture button
PTPRG ENSDART00000092552 Receptor-type tyrosine-protein phosphatase gamma precursor (EC 3.1.3.48) (Protein-tyrosine phosphatase gamma) (R-PTP-gamma). [Source:Uniprot/SWISSPROT;Acc:P23470]
16.042 -14.51 0.0000103356 700 5 12 8 [+] picture button
dlx5a ENSDART00000062026 Homeobox protein Dlx5a (DLX-4) (Distal-less homeobox protein 5a). [Source:Uniprot/SWISSPROT;Acc:P50576]
16.8281 -12.69 0.0000121881 283 6 11 10 [+] picture button
A4QN61_DANRE ENSDART00000083218 Hypothetical protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:A4QN61]
16.2314 -13.95 0.0000130823 674 6 1 8 [+] picture button
zgc:110308 ENSDART00000100567 Methionine adenosyltransferase 2 subunit beta (Methionine adenosyltransferase II beta) (MAT II beta) (Methionine adenosyltransferase 2 beta subunit). [Source:Uniprot/SWISSPROT;Acc:Q5BJJ6]
17.0367 -17.22 0.000015859 700 3 1 4 [+] picture button
chac1 ENSDART00000103330 Cation transport regulator-like protein 1. [Source:Uniprot/SWISSPROT;Acc:Q5SPB6]
16.8271 -9.61 0.0000174059 455 11 5 16 [+] picture button
arfip1 ENSDART00000102501 ADP-ribosylation factor interacting protein 1 (arfaptin 1) [Source:RefSeq_peptide;Acc:NP_998533]
16.4423 -16.9 0.0000179271 374 9 2 13 [+] picture button
zgc:77057 ENSDART00000063150 hypothetical protein LOC334166 [Source:RefSeq_peptide;Acc:NP_999870]
16.3976 -18.79 0.0000193736 1212 2 4 3 [+] picture button
zgc:110130 ENSDART00000057278 Uncharacterized protein C2orf33 homolog A. [Source:Uniprot/SWISSPROT;Acc:Q503U3]
17.441 -12.59 0.0000212467 407 6 3 10 [+] picture button
A2BHH5_DANRE ENSDART00000082577 Novel protein. [Source:Uniprot/SPTREMBL;Acc:A2BHH5]
16.0376 -10.67 0.0000248277 700 6 1 7 [+] picture button
wnt10a ENSDART00000007308 Protein Wnt-10a precursor. [Source:Uniprot/SWISSPROT;Acc:P43446]
18.5336 -16.9 0.0000270609 256 6 2 11 [+] picture button
pgd ENSDART00000017728 phosphogluconate hydrogenase isoform 1 [Source:RefSeq_peptide;Acc:NP_998618]
17.4946 -17.74 0.000028035 339 9 7 19 [+] picture button
LOC100006896 ENSDART00000033206 Collagenase 3 precursor (EC 3.4.24.-) (Matrix metalloproteinase-13) (MMP-13). [Source:Uniprot/SWISSPROT;Acc:P45452]Collagenase 3 precursor (EC 3.4.24.-) (Matrix metalloproteinase-13) (MMP-13). [Source:Uniprot/SWISSPROT;Acc:P45452] BY ORTHOLOGY TO:ENSGACT00000008559
17.4235 -14.14 0.0000298873 700 5 1 7 [+] picture button
ube2d1 ENSDART00000048853 hypothetical protein LOC394085 [Source:RefSeq_peptide;Acc:NP_957404]
16.0607 -7.91 0.0000329119 365 3 6 7 [+] picture button
si:ch211-242m18.4 ENSDART00000079695 si:ch211-242m18.4 (si:ch211-242m18.4), misc RNA [Source:RefSeq_dna;Acc:XR_030069]
18.1925 -19.05 0.0000358329 165 5 1 7 [+] picture button
LOC100005268 ENSDART00000084354 cytoplasmic polyadenylation element binding protein 3 [Source:MarkerSymbol;Acc:MGI:2443075]cytoplasmic polyadenylation element binding protein 3 [Source:MarkerSymbol;Acc:MGI:2443075] BY ORTHOLOGY TO:ENSMUST00000079754
16.449 -20.88 0.0000362786 700 10 3 13 [+] picture button
si:ch211-157m21.1 ENSDART00000058502 hypothetical protein LOC562048 [Source:RefSeq_peptide;Acc:NP_001025335]
16.6094 -12.07 0.0000362853 700 5 11 8 [+] picture button
si:dkey-211c3.1 ENSDART00000089836 Novel protein similar to vertebrate Jumonji, AT rich interactive domain 2 (JARID2) (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q1LVC2]
17.1577 -17.22 0.000036375 700 8 5 17 [+] picture button
rln3 ENSDART00000087803 relaxin 3 [Source:RefSeq_peptide;Acc:NP_001032892]
17.1692 -12.21 0.0000375287 195 5 2 11 [+] picture button
ENSDART00000105381 NOT ANNOTATED
17.0235 -13.73 0.0000462103 700 6 1 7 [+] picture button
si:dkeyp-11g8.5 ENSDART00000061637 Novel protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q5RG85]
18.0961 -16.21 0.0000489188 438 6 1 12 [+] picture button
arl6ip1 ENSDART00000058955 ADP-ribosylation factor-like 6 interacting protein [Source:RefSeq_peptide;Acc:NP_957406]
16.8266 -20.24 0.0000509469 810 2 2 5 [+] picture button
nfil3 ENSDART00000063101 Nuclear factor interleukin-3 regulated protein. [Source:Uniprot/SWISSPROT;Acc:Q68EL6]
16.0322 -13.19 0.0000512291 267 11 3 27 [+] picture button
nfe2l2 ENSDART00000062854 nuclear factor (erythroid-derived 2)-like 2 [Source:RefSeq_peptide;Acc:NP_878309]
17.2364 -10.45 0.0000562371 395 10 4 15 [+] picture button
pvalb2 ENSDART00000010144 Parvalbumin-2 (Parvalbumin beta). [Source:Uniprot/SWISSPROT;Acc:Q9I8V0]
17.2829 -17.79 0.0000652083 234 3 1 11 [+] picture button
zgc:56152 ENSDART00000031253 hypothetical protein LOC394173 [Source:RefSeq_peptide;Acc:NP_957492]
19.557 -20.06 0.0000672328 179 5 1 7 [+] picture button
zgc:56164 ENSDART00000028161 hypothetical protein LOC394044 [Source:RefSeq_peptide;Acc:NP_957363]
16.487 -10.7 0.0000698621 207 2 2 7 [+] picture button
LOC100004124 ENSDART00000093341 Probable G-protein coupled receptor 1. [Source:Uniprot/SWISSPROT;Acc:P46091]Probable G-protein coupled receptor 1. [Source:Uniprot/SWISSPROT;Acc:P46091] BY ORTHOLOGY TO:ENSPTRT00000045133
16.2827 -20.06 0.0000703022 700 6 1 7 [+] picture button
LOC100008537 ENSDART00000046613 vacuolar protein sorting-associated protein (vps13d)vacuolar protein sorting-associated protein (vps13d) BY ORTHOLOGY TO:AAEL007551-RA
16.4792 -14.78 0.0000780066 700 5 1 10 [+] picture button
PPEF1 ENSDART00000003475 Serine/threonine-protein phosphatase with EF-hands 1 (EC 3.1.3.16) (PPEF-1) (Protein phosphatase with EF calcium-binding domain) (PPEF) (Serine/threonine-protein phosphatase 7) (PP7). [Source:Uniprot/SWISSPROT;Acc:O14829]
16.4161 -14.55 0.0000820115 700 4 1 7 [+] picture button
memo1 ENSDART00000016793 Protein MEMO1 (Mediator of ErbB2-driven cell motility 1) (Protein memo). [Source:Uniprot/SWISSPROT;Acc:Q803S3]
16.3415 -16.48 0.0000824262 644 7 1 8 [+] picture button

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Download table: GFF TXT
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