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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Tetraodon nigroviridis and fru-miR-189

805 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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GSTENG00023809001 GSTENT00023809001 Ubiquitin carboxyl-terminal hydrolase 44 (EC 3.1.2.15) (Ubiquitin thioesterase 44) (Ubiquitin-specific-processing protease 44) (Deubiquitinating enzyme 44). [Source:Uniprot/SWISSPROT;Acc:Q9H0E7]Ubiquitin carboxyl-terminal hydrolase 44 (EC 3.1.2.15) (Ubiquitin thioesterase 44) (Ubiquitin-specific-processing protease 44) (Deubiquitinating enzyme 44). [Source:Uniprot/SWISSPROT;Acc:Q9H0E7] BY ORTHOLOGY TO:ENST00000258499
16.5998 -20.32 0.0000105002 400 9 6 15 [+] picture button
GSTENG00014151001 GSTENT00014151001 Carbohydrate sulfotransferase 13 (EC 2.8.2.5) (Chondroitin 4-O- sulfotransferase 3) (Chondroitin 4-sulfotransferase 3) (C4ST3) (C4ST- 3). [Source:Uniprot/SWISSPROT;Acc:Q8NET6]Carbohydrate sulfotransferase 13 (EC 2.8.2.5) (Chondroitin 4-O- sulfotransferase 3) (Chondroitin 4-sulfotransferase 3) (C4ST3) (C4ST- 3). [Source:Uniprot/SWISSPROT;Acc:Q8NET6] BY ORTHOLOGY TO:ENSCAFT00000006228
15.3392 -17.55 0.000011573 400 6 2 11 [+] picture button
GSTENG00023743001 GSTENT00023743001 hypothetical protein LOC428678 [Source:RefSeq_peptide;Acc:NP_001026702]hypothetical protein LOC428678 [Source:RefSeq_peptide;Acc:NP_001026702] BY ORTHOLOGY TO:ENSGALT00000011948
14.9055 -22 0.0000116677 400 5 4 5 [+] picture button
GSTENG00034621001 GSTENT00034621001 LAG1 longevity assurance homolog 6. [Source:Uniprot/SWISSPROT;Acc:Q6ZMG9]LAG1 longevity assurance homolog 6. [Source:Uniprot/SWISSPROT;Acc:Q6ZMG9] BY ORTHOLOGY TO:ENSGACT00000007081
15.5361 -19.65 0.0000129704 400 5 3 9 [+] picture button
GSTENG00037577001 GSTENT00037577001 Interferon regulatory factor. [Source:Uniprot/SPTREMBL;Acc:Q98TA1]Interferon regulatory factor. [Source:Uniprot/SPTREMBL;Acc:Q98TA1] BY ORTHOLOGY TO:SINFRUT00000130702
16.0647 -12.51 0.0000162746 262 6 2 8 [+] picture button
GSTENG00010403001 GSTENT00010403001 Eukaryotic translation elongation factor 1 epsilon-1 (Multisynthetase complex auxiliary component p18) (Elongation factor p18). [Source:Uniprot/SWISSPROT;Acc:O43324]Eukaryotic translation elongation factor 1 epsilon-1 (Multisynthetase complex auxiliary component p18) (Elongation factor p18). [Source:Uniprot/SWISSPROT;Acc:O43324] BY ORTHOLOGY TO:ENSORLT00000008250
16.7775 -21.57 0.0000178631 400 6 2 13 [+] picture button
GSTENG00005018001 GSTENT00005018001 Ca(2+)/calmodulin-dependent protein kinase phosphatase (EC 3.1.3.16) (CaM-kinase phosphatase) (CaMKPase) (Partner of PIX 2) (hFEM-2) (Protein phosphatase 1F). [Source:Uniprot/SWISSPROT;Acc:P49593]Ca(2+)/calmodulin-dependent protein kinase phosphatase (EC 3.1.3.16) (CaM-kinase phosphatase) (CaMKPase) (Partner of PIX 2) (hFEM-2) (Protein phosphatase 1F). [Source:Uniprot/SWISSPROT;Acc:P49593] BY ORTHOLOGY TO:SINFRUT00000138624
18.4324 -23.39 0.0000181513 400 6 1 6 [+] picture button
GSTENG00014237001 GSTENT00014237001 SRY-box containing gene 9a [Source:RefSeq_peptide;Acc:NP_571718]SRY-box containing gene 9a [Source:RefSeq_peptide;Acc:NP_571718] BY ORTHOLOGY TO:ENSDART00000005676
18.5341 -20.61 0.0000213629 400 6 3 9 [+] picture button
GSTENG00012458001 GSTENT00012458001 cache domain containing 1 [Source:RefSeq_peptide;Acc:NP_065976]cache domain containing 1 [Source:RefSeq_peptide;Acc:NP_065976] BY ORTHOLOGY TO:ENSOANT00000013243
15.0465 -24.05 0.0000243295 400 1 3 1 [+] picture button
GSTENG00006613001 GSTENT00006613001 Lin-7 homolog B (Lin-7B) (hLin7B) (Mammalian lin-seven protein 2) (MALS-2) (Vertebrate lin-7 homolog 2) (Veli-2 protein) (hVeli2). [Source:Uniprot/SWISSPROT;Acc:Q9HAP6]Lin-7 homolog B (Lin-7B) (hLin7B) (Mammalian lin-seven protein 2) (MALS-2) (Vertebrate lin-7 homolog 2) (Veli-2 protein) (hVeli2). [Source:Uniprot/SWISSPROT;Acc:Q9HAP6] BY ORTHOLOGY TO:SINFRUT00000182685
16.8706 -15.59 0.0000320005 436 5 3 7 [+] picture button
GSTENG00008094001 GSTENT00008094001 Whirlin (Autosomal recessive deafness type 31 protein). [Source:Uniprot/SWISSPROT;Acc:Q9P202]Whirlin (Autosomal recessive deafness type 31 protein). [Source:Uniprot/SWISSPROT;Acc:Q9P202] BY ORTHOLOGY TO:ENST00000362057
14.9009 -17.47 0.0000357021 400 4 2 5 [+] picture button
GSTENG00021492001 GSTENT00021492001 Homolog of Homo sapiens "CTD-binding SR-like protein rA9 [Source:IPI;Acc:IPI00001813]"Homolog of Homo sapiens "CTD-binding SR-like protein rA9 [Source:IPI;Acc:IPI00001813]" BY ORTHOLOGY TO:SINFRUT00000182874
19.3931 -16.52 0.0000358347 400 7 2 11 [+] picture button
GSTENG00018839001 GSTENT00018839001 A kinase anchor protein 10, mitochondrial precursor (Protein kinase A- anchoring protein 10) (PRKA10) (Dual specificity A kinase-anchoring protein 2) (D-AKAP-2). [Source:Uniprot/SWISSPROT;Acc:O43572]A kinase anchor protein 10, mitochondrial precursor (Protein kinase A- anchoring protein 10) (PRKA10) (Dual specificity A kinase-anchoring protein 2) (D-AKAP-2). [Source:Uniprot/SWISSPROT;Acc:O43572] BY ORTHOLOGY TO:ENSORLT00000013677
15.0779 -18.97 0.00003989 400 6 3 6 [+] picture button
GSTENG00004900001 GSTENT00004900001 Zinc finger and BTB domain-containing protein 45 (Zinc finger protein 499). [Source:Uniprot/SWISSPROT;Acc:Q96K62]Zinc finger and BTB domain-containing protein 45 (Zinc finger protein 499). [Source:Uniprot/SWISSPROT;Acc:Q96K62] BY ORTHOLOGY TO:ENSGALT00000029828
16.0366 -20.91 0.0000471289 400 3 2 4 [+] picture button
GSTENG00005423001 GSTENT00005423001 transmembrane 9 superfamily member 3 [Source:MarkerSymbol;Acc:MGI:1914262]transmembrane 9 superfamily member 3 [Source:MarkerSymbol;Acc:MGI:1914262] BY ORTHOLOGY TO:ENSMUST00000067800
15.2763 -15.26 0.0000608658 400 7 7 10 [+] picture button
GSTENG00003944001 GSTENT00003944001 Ras GTPase-activating protein nGAP (RAS protein activator-like 1). [Source:Uniprot/SWISSPROT;Acc:Q9UJF2]Ras GTPase-activating protein nGAP (RAS protein activator-like 1). [Source:Uniprot/SWISSPROT;Acc:Q9UJF2] BY ORTHOLOGY TO:ENSOANT00000001503
15.6982 -21.81 0.0000641759 400 5 1 9 [+] picture button
GSTENG00015342001 GSTENT00015342001 Inhibitor of growth protein 4 (p29ING4). [Source:Uniprot/SWISSPROT;Acc:Q5ZKY4]Inhibitor of growth protein 4 (p29ING4). [Source:Uniprot/SWISSPROT;Acc:Q5ZKY4] BY ORTHOLOGY TO:ENSGALT00000023343
15.0465 -14.52 0.0000662904 400 4 2 5 [+] picture button
GSTENG00022590001 GSTENT00022590001 hypothetical protein LOC556042 [Source:RefSeq_peptide;Acc:NP_001070838]hypothetical protein LOC556042 [Source:RefSeq_peptide;Acc:NP_001070838] BY ORTHOLOGY TO:ENSDART00000048676
18.1964 -23.84 0.0000847038 400 5 2 5 [+] picture button
GSTENG00008928001 GSTENT00008928001 alanyl-tRNA synthetase like [Source:RefSeq_peptide;Acc:NP_001026227]alanyl-tRNA synthetase like [Source:RefSeq_peptide;Acc:NP_001026227] BY ORTHOLOGY TO:ENSGALT00000016525
14.8656 -19.48 0.0000931191 612 4 1 4 [+] picture button
GSTENG00017208001 GSTENT00017208001 E3 ubiquitin-protein ligase UHRF2 (EC 6.3.2.-) (Ubiquitin-like PHD and RING finger domain-containing protein 2) (Ubiquitin-like-containing PHD and RING finger domains protein 2) (Np95/ICBP90-like RING finger protein) (Np95-like RING finger protein) (Nucle [Source:Uniprot/SWISSPROT;Acc:Q96PU4]E3 ubiquitin-protein ligase UHRF2 (EC 6.3.2.-) (Ubiquitin-like PHD and RING finger domain-containing protein 2) (Ubiquitin-like-containing PHD and RING finger domains protein 2) (Np95/ICBP90-like RING finger protein) (Np95-like RING finger protein) (Nucle [Source:Uniprot/SWISSPROT;Acc:Q96PU4] BY ORTHOLOGY TO:SINFRUT00000155873
15.3732 -19.21 0.0000941336 400 5 11 7 [+] picture button
GSTENG00007002001 GSTENT00007002001 NOT ANNOTATED
16.7635 -18.64 0.000097686 400 6 1 7 [+] picture button
GSTENG00016131001 GSTENT00016131001 Coiled-coil domain-containing protein 13. [Source:Uniprot/SWISSPROT;Acc:Q8IYE1]Coiled-coil domain-containing protein 13. [Source:Uniprot/SWISSPROT;Acc:Q8IYE1] BY ORTHOLOGY TO:ENSGALT00000008504
15.4487 -21.59 0.000113707 400 5 2 6 [+] picture button
GSTENG00032294001 GSTENT00032294001 Neuroglobin. [Source:Uniprot/SWISSPROT;Acc:Q90W04]
16.3253 -20.37 0.000139785 400 6 3 9 [+] picture button
GSTENG00015344001 GSTENT00015344001 Probable ribosome biogenesis protein NEP1 (Nucleolar protein EMG1 homolog) (Protein C2f). [Source:Uniprot/SWISSPROT;Acc:Q92979]Probable ribosome biogenesis protein NEP1 (Nucleolar protein EMG1 homolog) (Protein C2f). [Source:Uniprot/SWISSPROT;Acc:Q92979] BY ORTHOLOGY TO:SINFRUT00000156102
15.8273 -19.64 0.000143861 441 7 1 8 [+] picture button
GSTENG00034717001 GSTENT00034717001 phytanoyl-CoA dioxygenase domain containing 1 [Source:RefSeq_peptide;Acc:NP_777593]phytanoyl-CoA dioxygenase domain containing 1 [Source:RefSeq_peptide;Acc:NP_777593] BY ORTHOLOGY TO:SINFRUT00000128555
14.9873 -13.56 0.000151084 400 5 3 10 [+] picture button
GSTENG00009382001 GSTENT00009382001 Calcium-binding protein 4 (CaBP4). [Source:Uniprot/SWISSPROT;Acc:P57796]Calcium-binding protein 4 (CaBP4). [Source:Uniprot/SWISSPROT;Acc:P57796] BY ORTHOLOGY TO:ENST00000325656
15.6679 -22.72 0.00016484 400 6 2 7 [+] picture button
GSTENG00016196001 GSTENT00016196001 Splicing factor arginine/serine-rich 11 (Arginine-rich 54 kDa nuclear protein) (p54). [Source:Uniprot/SWISSPROT;Acc:Q05519]Splicing factor arginine/serine-rich 11 (Arginine-rich 54 kDa nuclear protein) (p54). [Source:Uniprot/SWISSPROT;Acc:Q05519] BY ORTHOLOGY TO:ENSMMUT00000019441
15.3706 -14.11 0.000167402 331 5 2 8 [+] picture button
GSTENG00028979001 GSTENT00028979001 hypothetical protein LOC323464 [Source:RefSeq_peptide;Acc:NP_997807]hypothetical protein LOC323464 [Source:RefSeq_peptide;Acc:NP_997807] BY ORTHOLOGY TO:ENSDART00000023867
15.0159 -12.15 0.000193917 400 4 1 4 [+] picture button
GSTENG00035150001 GSTENT00035150001 spectrin beta 4 [Source:MarkerSymbol;Acc:MGI:1890574]spectrin beta 4 [Source:MarkerSymbol;Acc:MGI:1890574] BY ORTHOLOGY TO:ENSMUST00000011895
16.654 -26.09 0.00020212 400 8 2 9 [+] picture button
GSTENG00024129001 GSTENT00024129001 hypothetical protein LOC550427 [Source:RefSeq_peptide;Acc:NP_001017732]hypothetical protein LOC550427 [Source:RefSeq_peptide;Acc:NP_001017732] BY ORTHOLOGY TO:ENSDART00000005587
17.2736 -20.5 0.000205841 400 5 4 6 [+] picture button
GSTENG00033405001 GSTENT00033405001 TBC1 domain family member 16. [Source:Uniprot/SWISSPROT;Acc:Q8TBP0]TBC1 domain family member 16. [Source:Uniprot/SWISSPROT;Acc:Q8TBP0] BY ORTHOLOGY TO:ENSCAFT00000008982
15.4487 -16.88 0.000219393 400 6 2 9 [+] picture button
GSTENG00030415001 GSTENT00030415001 arginyl-tRNA synthetasearginyl-tRNA synthetase BY ORTHOLOGY TO:AAEL013862-RA
15.12 -14.76 0.000226729 400 5 3 6 [+] picture button
GSTENG00020381001 GSTENT00020381001 Transmembrane protein 164. [Source:Uniprot/SWISSPROT;Acc:Q5U3C3]Transmembrane protein 164. [Source:Uniprot/SWISSPROT;Acc:Q5U3C3] BY ORTHOLOGY TO:ENSXETT00000027170
15.3392 -14.25 0.000244422 400 3 2 3 [+] picture button
GSTENG00014500001 GSTENT00014500001 Cleavage and polyadenylation specificity factor 6 (Cleavage and polyadenylation specificity factor 68 kDa subunit) (CPSF 68 kDa subunit) (Pre-mRNA cleavage factor Im 68 kDa subunit) (Protein HPBRII- 4/7). [Source:Uniprot/SWISSPROT;Acc:Q16630]Cleavage and polyadenylation specificity factor 6 (Cleavage and polyadenylation specificity factor 68 kDa subunit) (CPSF 68 kDa subunit) (Pre-mRNA cleavage factor Im 68 kDa subunit) (Protein HPBRII- 4/7). [Source:Uniprot/SWISSPROT;Acc:Q16630] BY ORTHOLOGY TO:ENSORLT00000017419
16.7635 -17.71 0.000297353 400 6 2 6 [+] picture button
GSTENG00021719001 GSTENT00021719001 Unc-13 homolog D (Munc13-4). [Source:Uniprot/SWISSPROT;Acc:Q70J99]Unc-13 homolog D (Munc13-4). [Source:Uniprot/SWISSPROT;Acc:Q70J99] BY ORTHOLOGY TO:ENSGACT00000006780
16.5444 -21.13 0.000302191 400 6 2 7 [+] picture button
GSTENG00036213001 GSTENT00036213001 Myosin alkali light chain 6, smooth muscle form. [Source:Uniprot/SPTREMBL;Acc:Q6P7Z1]Myosin alkali light chain 6, smooth muscle form. [Source:Uniprot/SPTREMBL;Acc:Q6P7Z1] BY ORTHOLOGY TO:ENSXETT00000053109
17.8592 -23.76 0.000336581 400 7 3 9 [+] picture button
GSTENG00029282001 GSTENT00029282001 ddp-1 encodes the C. elegans ortholog of Saccharomyces cerevisiae Tim8p and human deafness/dystonia peptide (DDP. OMIM:300356, mutated in Mohr-Tranebjaerg syndrome). by homology, DDP-1 is predicted to be part of a heterooligomeric complex that localizes to the mitochondrial intermembrane space and facilitates translocation of proteins from the cytosol to the inner mitochondrial membrane. loss of ddp-1 activity via large-scale RNAi screens does not result in any obvious abnormalities, indicating that ddp-1 is not essential for C. elegans development or may function redundantly with its paralogs, TIN-9, -10, and -13. [Source: WormBase]ddp-1 encodes the C. elegans ortholog of Saccharomyces cerevisiae Tim8p and human deafness/dystonia peptide (DDP. OMIM:300356, mutated in Mohr-Tranebjaerg syndrome). by homology, DDP-1 is predicted to be part of a heterooligomeric complex that localizes to the mitochondrial intermembrane space and facilitates translocation of proteins from the cytosol to the inner mitochondrial membrane. loss of ddp-1 activity via large-scale RNAi screens does not result in any obvious abnormalities, indicating that ddp-1 is not essential for C. elegans development or may function redundantly with its paralogs, TIN-9, -10, and -13. [Source: WormBase] BY ORTHOLOGY TO:Y39A3CR.4
15.1718 -13.66 0.00037025 363 4 1 5 [+] picture button
GSTENG00022790001 GSTENT00022790001 DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide (EC 2.7.7.6) (RNA polymerase III subunit 2) (RPC2). [Source:Uniprot/SWISSPROT;Acc:Q9NW08]DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide (EC 2.7.7.6) (RNA polymerase III subunit 2) (RPC2). [Source:Uniprot/SWISSPROT;Acc:Q9NW08] BY ORTHOLOGY TO:ENSGACT00000015670
18.0086 -25.71 0.000373691 431 8 2 11 [+] picture button
GSTENG00033463001 GSTENT00033463001 Integrator complex subunit 12 (Int12) (PHD finger protein 22). [Source:Uniprot/SWISSPROT;Acc:Q96CB8]Integrator complex subunit 12 (Int12) (PHD finger protein 22). [Source:Uniprot/SWISSPROT;Acc:Q96CB8] BY ORTHOLOGY TO:ENSMMUT00000016419
17.4596 -17.25 0.000375335 400 5 2 8 [+] picture button
GSTENG00012836001 GSTENT00012836001 MGC107830 protein. [Source:Uniprot/SPTREMBL;Acc:Q5BKN0]MGC107830 protein. [Source:Uniprot/SPTREMBL;Acc:Q5BKN0] BY ORTHOLOGY TO:ENSXETT00000002354
17.5354 -24.86 0.00037999 263 2 2 3 [+] picture button
GSTENG00030562001 GSTENT00030562001 Pleckstrin homology Sec7 and coiled-coil domains-binding protein (Cytohesin-binding protein HE) (CYBR) (Cytohesin binder and regulator) (Cytohesin-interacting protein). [Source:Uniprot/SWISSPROT;Acc:O60759]Pleckstrin homology Sec7 and coiled-coil domains-binding protein (Cytohesin-binding protein HE) (CYBR) (Cytohesin binder and regulator) (Cytohesin-interacting protein). [Source:Uniprot/SWISSPROT;Acc:O60759] BY ORTHOLOGY TO:ENST00000264192
15.5583 -17 0.000405715 400 6 2 6 [+] picture button
GSTENG00021946001 GSTENT00021946001 Homolog of Homo sapiens "Neurexophilin-1 precursor [Source:IPI;Acc:IPI00048230]"Homolog of Homo sapiens "Neurexophilin-1 precursor [Source:IPI;Acc:IPI00048230]" BY ORTHOLOGY TO:SINFRUT00000148414
17.7496 -26.58 0.000407587 400 6 2 7 [+] picture button
GSTENG00031317001 GSTENT00031317001 F-box protein 33 [Source:MarkerSymbol;Acc:MGI:1917861]F-box protein 33 [Source:MarkerSymbol;Acc:MGI:1917861] BY ORTHOLOGY TO:ENSMUST00000043204
15.5919 -16.63 0.000410437 400 5 2 5 [+] picture button
GSTENG00008691001 GSTENT00008691001 filamin, alpha [Source:MarkerSymbol;Acc:MGI:95556]filamin, alpha [Source:MarkerSymbol;Acc:MGI:95556] BY ORTHOLOGY TO:ENSMUST00000033699
18.8453 -30.3 0.000414753 400 6 1 7 [+] picture button
GSTENG00013764001 GSTENT00013764001 5-hydroxytryptamine 3 receptor precursor (5-HT-3) (Serotonin-gated ion channel receptor) (5-HT3R). [Source:Uniprot/SWISSPROT;Acc:P46098]5-hydroxytryptamine 3 receptor precursor (5-HT-3) (Serotonin-gated ion channel receptor) (5-HT3R). [Source:Uniprot/SWISSPROT;Acc:P46098] BY ORTHOLOGY TO:ENSORLT00000018340
17.5842 -29.89 0.000440063 400 3 2 3 [+] picture button
GSTENG00027898001 GSTENT00027898001 cdc16 CG6759-PA [Source:RefSeq_peptide;Acc:NP_477397]cdc16 CG6759-PA [Source:RefSeq_peptide;Acc:NP_477397] BY ORTHOLOGY TO:CG6759-RA
15.5583 -19.11 0.000453267 400 8 2 8 [+] picture button
GSTENG00027307001 GSTENT00027307001 SLIT-ROBO Rho GTPase-activating protein 3 (srGAP3) (srGAP2) (WAVE- associated Rac GTPase-activating protein) (WRP) (Mental disorder- associated GAP) (Rho GTPase-activating protein 14). [Source:Uniprot/SWISSPROT;Acc:O43295]SLIT-ROBO Rho GTPase-activating protein 3 (srGAP3) (srGAP2) (WAVE- associated Rac GTPase-activating protein) (WRP) (Mental disorder- associated GAP) (Rho GTPase-activating protein 14). [Source:Uniprot/SWISSPROT;Acc:O43295] BY ORTHOLOGY TO:ENSGACT00000001197
15.7774 -17.07 0.00047747 400 3 4 5 [+] picture button
GSTENG00003474001 GSTENT00003474001 Kinetochore-associated protein NSL1 homolog. [Source:Uniprot/SWISSPROT;Acc:Q96IY1]Kinetochore-associated protein NSL1 homolog. [Source:Uniprot/SWISSPROT;Acc:Q96IY1] BY ORTHOLOGY TO:ENSMODT00000003817
16.1778 -27 0.000489486 211 4 1 4 [+] picture button
GSTENG00017955001 GSTENT00017955001 Protocadherin-17 precursor (Protocadherin-68). [Source:Uniprot/SWISSPROT;Acc:O14917]Protocadherin-17 precursor (Protocadherin-68). [Source:Uniprot/SWISSPROT;Acc:O14917] BY ORTHOLOGY TO:ENSPTRT00000060167
15.0736 -18.9 0.00053907 400 6 1 12 [+] picture button
GSTENG00017298001 GSTENT00017298001 carbonic anhydrase 15 [Source:MarkerSymbol;Acc:MGI:1931324]carbonic anhydrase 15 [Source:MarkerSymbol;Acc:MGI:1931324] BY ORTHOLOGY TO:ENSMUST00000088262
15.0105 -19.32 0.000550141 400 2 1 2 [+] picture button

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