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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Rattus norvegicus and rno-miR-7a*

705 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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RGD1560402_predicted ENSRNOT00000036860 NOT ANNOTATED
16.2991 -11.65 0.0000656607 700 15 1 23 [+] picture button
Zfp644_predicted ENSRNOT00000002882 zinc finger protein 644 [Source:MarkerSymbol;Acc:MGI:1277212]zinc finger protein 644 [Source:MarkerSymbol;Acc:MGI:1277212] BY ORTHOLOGY TO:ENSMUST00000045466
16.726 -15.24 0.000130656 700 18 7 29 [+] picture button
LOC680812 ENSRNOT00000044993 similar to RIKEN cDNA 1700081O22 (LOC363337), mRNA [Source:RefSeq_dna;Acc:NM_001014221]
18.4513 -11.75 0.000153826 312 14 1 33 [+] picture button
RGD1565762_predicted ENSRNOT00000046626 similar to High mobility group protein 1 (HMG-1) (predicted) (RGD1565762_predicted), mRNA [Source:RefSeq_dna;Acc:XR_007757]
17.7384 -23.12 0.000154207 591 12 1 17 [+] picture button
LOC679098 ENSRNOT00000029558 hypothetical protein LOC505337 [Source:RefSeq_peptide;Acc:NP_001068666]hypothetical protein LOC505337 [Source:RefSeq_peptide;Acc:NP_001068666] BY ORTHOLOGY TO:ENSBTAT00000022512
17.3962 -18.46 0.000247823 700 21 2 37 [+] picture button
Cct4 ENSRNOT00000012847 T-complex protein 1 subunit delta (TCP-1-delta) (CCT-delta). [Source:Uniprot/SWISSPROT;Acc:Q7TPB1]
17.9568 -15.79 0.000272333 356 12 4 32 [+] picture button
Kpl2 ENSRNOT00000023780 KPL2 protein [Source:RefSeq_peptide;Acc:NP_072142]
15.7817 -12.17 0.000405741 700 16 1 23 [+] picture button
Mrpl3_predicted ENSRNOT00000017280 Mitochondrial 39S ribosomal protein L3 (L3mt) (MRP-L3). [Source:Uniprot/SWISSPROT;Acc:P18665]
16.6281 -19.08 0.000498491 314 16 3 65 [+] picture button
LOC680812 ENSRNOT00000050521 similar to RIKEN cDNA 1700081O22 (LOC363337), mRNA [Source:RefSeq_dna;Acc:NM_001014221]
17.3966 -11.48 0.000549563 348 12 1 34 [+] picture button
LOC501296 ENSRNOT00000046396 NOT ANNOTATED
17.3447 -7.7 0.00059315 308 15 1 41 [+] picture button
Zcchc4_predicted ENSRNOT00000042757 Zinc finger CCHC domain-containing protein 4. [Source:Uniprot/SWISSPROT;Acc:Q9H5U6]Zinc finger CCHC domain-containing protein 4. [Source:Uniprot/SWISSPROT;Acc:Q9H5U6] BY ORTHOLOGY TO:ENST00000302874
17.631 -23.37 0.000992825 700 14 2 22 [+] picture button
P4ha2_predicted ENSRNOT00000042144 Prolyl 4-hydroxylase subunit alpha-2 precursor (EC 1.14.11.2) (4-PH alpha-2) (Procollagen-proline,2-oxoglutarate-4-dioxygenase alpha-2 subunit). [Source:Uniprot/SWISSPROT;Acc:O15460]Prolyl 4-hydroxylase subunit alpha-2 precursor (EC 1.14.11.2) (4-PH alpha-2) (Procollagen-proline,2-oxoglutarate-4-dioxygenase alpha-2 subunit). [Source:Uniprot/SWISSPROT;Acc:O15460] BY ORTHOLOGY TO:ENST00000379104
16.1663 -10.96 0.00116947 700 19 7 39 [+] picture button
PLMN_RAT ENSRNOT00000023368 Plasminogen precursor (EC 3.4.21.7) [Contains: Plasmin heavy chain A; Activation peptide; Angiostatin; Plasmin heavy chain A, short form; Plasmin light chain B]. [Source:Uniprot/SWISSPROT;Acc:Q01177]
17.3966 -15.95 0.00127631 241 13 6 41 [+] picture button
Neil2_predicted ENSRNOT00000014198 Endonuclease VIII-like 2 (EC 3.2.2.-) (EC 4.2.99.18) (Nei-like 2) (DNA glycosylase/AP lyase Neil2) (DNA-(apurinic or apyrimidinic site) lyase Neil2) (NEH2). [Source:Uniprot/SWISSPROT;Acc:Q969S2]Endonuclease VIII-like 2 (EC 3.2.2.-) (EC 4.2.99.18) (Nei-like 2) (DNA glycosylase/AP lyase Neil2) (DNA-(apurinic or apyrimidinic site) lyase Neil2) (NEH2). [Source:Uniprot/SWISSPROT;Acc:Q969S2] BY ORTHOLOGY TO:ENSXETT00000031381
16.179 -12.95 0.00130437 700 19 3 28 [+] picture button
Eif1b_predicted ENSRNOT00000025615 Eukaryotic translation initiation factor 1b (eIF1b) (Protein translation factor SUI1 homolog GC20). [Source:Uniprot/SWISSPROT;Acc:O60739]Eukaryotic translation initiation factor 1b (eIF1b) (Protein translation factor SUI1 homolog GC20). [Source:Uniprot/SWISSPROT;Acc:O60739] BY ORTHOLOGY TO:ENSGALT00000019478
17.1183 -9.85 0.00134566 389 16 6 35 [+] picture button
Ripx ENSRNOT00000020608 Protein RUFY3 (Rap2-interacting protein x) (RIPx). [Source:Uniprot/SWISSPROT;Acc:Q5FVJ0]
17.631 -17.55 0.00146268 700 9 1 11 [+] picture button
ENSRNOT00000010809 NOT ANNOTATED
16.2579 -7.35 0.001519 700 11 1 16 [+] picture button
Olr583_predicted ENSRNOT00000042996 olfactory receptor Olr583 [Source:RefSeq_peptide;Acc:NP_001000928]
16.406 -10.78 0.00165909 700 10 2 11 [+] picture button
7420426K07Rik ENSRNOT00000034801 RIKEN cDNA 7420426K07 gene [Source:MarkerSymbol;Acc:MGI:3588253]
17.2161 -15.48 0.00170713 700 18 2 26 [+] picture button
RGD1311662_predicted ENSRNOT00000002683 Protein FAM3B precursor (Cytokine-like protein 2-21). [Source:Uniprot/SWISSPROT;Acc:P58499]Protein FAM3B precursor (Cytokine-like protein 2-21). [Source:Uniprot/SWISSPROT;Acc:P58499] BY ORTHOLOGY TO:ENSGALT00000036720
16.5939 -15.95 0.00172892 700 17 3 31 [+] picture button
Klri1 ENSRNOT00000055814 killer cell lectin-like receptor family I member 1 [Source:RefSeq_peptide;Acc:NP_001012667]
16.6976 -14.25 0.00175845 700 7 2 7 [+] picture button
B2m ENSRNOT00000023017 Beta-2-microglobulin precursor. [Source:Uniprot/SWISSPROT;Acc:P07151]
15.9662 -11.46 0.00178175 461 18 3 32 [+] picture button
Fcgr3a ENSRNOT00000047434 Fc fragment of IgG, low affinity IIIa, receptor [Source:RefSeq_peptide;Acc:NP_997486]
16.6908 -12.97 0.00183243 400 15 2 30 [+] picture button
ENSRNOT00000005531 Histone deacetylase 9 (HD9) (HD7B) (HD7) (Histone deacetylase-related protein) (MEF2-interacting transcription repressor MITR). [Source:Uniprot/SWISSPROT;Acc:Q9UKV0]Histone deacetylase 9 (HD9) (HD7B) (HD7) (Histone deacetylase-related protein) (MEF2-interacting transcription repressor MITR). [Source:Uniprot/SWISSPROT;Acc:Q9UKV0] BY ORTHOLOGY TO:ENSOANT00000015271
16.5939 -16.5 0.0019598 700 14 1 18 [+] picture button
Dedd ENSRNOT00000005147 Death effector domain-containing protein (Death effector domain- containing testicular molecule). [Source:Uniprot/SWISSPROT;Acc:Q9Z2K0]
16.0322 -11.67 0.00197103 122 7 5 28 [+] picture button
RGD1307907_predicted ENSRNOT00000023569 transmembrane protein 87B (TMEM87B), mRNA [Source:RefSeq_dna;Acc:NM_032824]transmembrane protein 87B (TMEM87B), mRNA [Source:RefSeq_dna;Acc:NM_032824] BY ORTHOLOGY TO:SINFRUT00000145751
16.5709 -8.87 0.00214584 465 17 3 38 [+] picture button
Idh1 ENSRNOT00000044302 Isocitrate dehydrogenase [NADP] cytoplasmic (EC 1.1.1.42) (Cytosolic NADP-isocitrate dehydrogenase) (Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific ICDH) (IDP). [Source:Uniprot/SWISSPROT;Acc:P41562]
15.9492 -10.14 0.00214587 356 18 4 48 [+] picture button
RGD1306801_predicted ENSRNOT00000016472 NOT ANNOTATED
16.3864 -23.22 0.00232089 700 13 1 18 [+] picture button
RGD1566232_predicted ENSRNOT00000003805 NOT ANNOTATED
16.3864 -15.1 0.00232089 700 18 1 18 [+] picture button
RGD1564862_predicted ENSRNOT00000050912 zinc finger protein 428 [Source:MarkerSymbol;Acc:MGI:1916463]zinc finger protein 428 [Source:MarkerSymbol;Acc:MGI:1916463] BY ORTHOLOGY TO:ENSMUST00000071361
16.2827 -25.91 0.00232089 700 21 7 30 [+] picture button
Abt1 ENSRNOT00000023649 Activator of basal transcription 1. [Source:Uniprot/SWISSPROT;Acc:Q4KLM5]
15.8589 -15.28 0.00235179 425 15 1 24 [+] picture button
Nmu ENSRNOT00000002941 Neuromedin-U precursor [Contains: Neuromedin-U-23 (NmU-23)]. [Source:Uniprot/SWISSPROT;Acc:P12760]
16.9418 -9.34 0.0024283 198 7 3 21 [+] picture button
CN716893 ENSRNOT00000050661 expressed sequence CN716893 [Source:MarkerSymbol;Acc:MGI:3584456]
15.5567 -11.08 0.00244818 700 16 2 21 [+] picture button
RGD1307202 ENSRNOT00000022852 ubiquilin-like [Source:MarkerSymbol;Acc:MGI:2685336]ubiquilin-like [Source:MarkerSymbol;Acc:MGI:2685336] BY ORTHOLOGY TO:ENSMUST00000059121
17.7903 -18.4 0.00251846 700 18 2 31 [+] picture button
KCC2B_RAT ENSRNOT00000005359 Calcium/calmodulin-dependent protein kinase type II beta chain (EC 2.7.11.17) (CaM-kinase II beta chain) (CaM kinase II subunit beta) (CaMK-II subunit beta). [Source:Uniprot/SWISSPROT;Acc:P08413]
17.3966 -18.54 0.00252034 149 7 4 29 [+] picture button
RGD1559643_predicted ENSRNOT00000032569 Uncharacterized protein C3orf59. [Source:Uniprot/SWISSPROT;Acc:Q8IYB1]Uncharacterized protein C3orf59. [Source:Uniprot/SWISSPROT;Acc:Q8IYB1] BY ORTHOLOGY TO:ENSMODT00000019240
16.1188 -15.54 0.00253893 700 19 6 32 [+] picture button
Pnck ENSRNOT00000043542 Calcium/calmodulin-dependent protein kinase type 1B (EC 2.7.11.17) (CaM kinase IB) (CaM kinase I beta) (CaMKI-beta) (CaM-KI beta) (Pregnancy up-regulated non-ubiquitously expressed CaM kinase homolog). [Source:Uniprot/SWISSPROT;Acc:O70150]
17.5103 -15.42 0.00254686 239 11 1 27 [+] picture button
Reps1_predicted ENSRNOT00000016818 RalBP1-associated Eps domain-containing protein 1 (RalBP1-interacting protein 1). [Source:Uniprot/SWISSPROT;Acc:Q96D71]RalBP1-associated Eps domain-containing protein 1 (RalBP1-interacting protein 1). [Source:Uniprot/SWISSPROT;Acc:Q96D71] BY ORTHOLOGY TO:ENSMMUT00000000335
17.7377 -13.87 0.00254686 218 12 8 35 [+] picture button
V1re2 ENSRNOT00000059694 vomeronasal V1r-type receptor V1re2 [Source:RefSeq_peptide;Acc:NP_001009512]
16.2032 -17.94 0.00261136 700 8 2 10 [+] picture button
ENSRNOT00000051890 NOT ANNOTATED
17.1328 -14.17 0.00262962 700 8 1 12 [+] picture button
Camk2d ENSRNOT00000016026 calcium/calmodulin-dependent protein kinase II, delta [Source:MarkerSymbol;Acc:MGI:1341265]
16.9393 -13.24 0.00263341 700 10 1 16 [+] picture button
RGD1562312_predicted ENSRNOT00000047765 similar to high-mobility group (nonhistone chromosomal) protein 1-like 1 (LOC316373), mRNA [Source:RefSeq_dna;Acc:XR_006051]
17.2986 -21.05 0.00269661 520 12 1 23 [+] picture button
RGD1311080_predicted ENSRNOT00000009094 similar to RIKEN cDNA A930038C07 (predicted) (RGD1311080_predicted), mRNA [Source:RefSeq_dna;Acc:XR_008378]
15.5528 -4.76 0.00274757 700 17 6 19 [+] picture button
LOC684054 ENSRNOT00000007993 leucine rich repeat transmembrane neuronal 1 [Source:MarkerSymbol;Acc:MGI:2389173]leucine rich repeat transmembrane neuronal 1 [Source:MarkerSymbol;Acc:MGI:2389173] BY ORTHOLOGY TO:ENSMUST00000020400
17.29 -15.63 0.00291302 700 19 10 31 [+] picture button
Snca ENSRNOT00000039247 Alpha-synuclein. [Source:Uniprot/SWISSPROT;Acc:P37377]
16.0224 -8.3 0.00295199 563 13 1 16 [+] picture button
Opn5 ENSRNOT00000031759 opsin 5 [Source:RefSeq_peptide;Acc:NP_861437]
16.5298 -19.43 0.00297778 700 19 3 27 [+] picture button
Cspg4 ENSRNOT00000023326 Chondroitin sulfate proteoglycan 4 precursor (Chondroitin sulfate proteoglycan NG2) (HSN tumor-specific antigen). [Source:Uniprot/SWISSPROT;Acc:Q00657]
17.0583 -24.53 0.0031404 1026 14 3 16 [+] picture button
ENSRNOT00000058552 CG15134-PA [Source:RefSeq_peptide;Acc:NP_609823]CG15134-PA [Source:RefSeq_peptide;Acc:NP_609823] BY ORTHOLOGY TO:CG15134-RA
15.7642 -9.36 0.00314604 700 16 3 20 [+] picture button
Ddx26 ENSRNOT00000035888 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 26 [Source:RefSeq_peptide;Acc:NP_001041369]
16.1766 -22.78 0.00317239 700 8 1 13 [+] picture button
RGD1560819_predicted ENSRNOT00000059551 Chondroitin sulfate synthase 3 (EC 2.4.1.175) (Glucuronosyl-N- acetylgalactosaminyl-proteoglycan 4-beta-N- acetylgalactosaminyltransferase II) (Chondroitin synthase 2) (N- acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase II) (EC 2.4.1.226) [Source:Uniprot/SWISSPROT;Acc:Q70JA7]Chondroitin sulfate synthase 3 (EC 2.4.1.175) (Glucuronosyl-N- acetylgalactosaminyl-proteoglycan 4-beta-N- acetylgalactosaminyltransferase II) (Chondroitin synthase 2) (N- acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase II) (EC 2.4.1.226) [Source:Uniprot/SWISSPROT;Acc:Q70JA7] BY ORTHOLOGY TO:ENSMMUT00000004683
16.0729 -7.27 0.00318199 700 17 6 24 [+] picture button

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Download table: GFF TXT
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