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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Rattus norvegicus and rno-miR-29c

1176 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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Q99MG0_RAT ENSRNOT00000006122 Melanoma-associated antigen MG50 (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q99MG0]
15.7642 -14.56 0.000000000422318 700 16 7 23 [+] picture button
Col4a5_predicted ENSRNOT00000025677 Collagen alpha-5(IV) chain precursor. [Source:Uniprot/SWISSPROT;Acc:P29400]Collagen alpha-5(IV) chain precursor. [Source:Uniprot/SWISSPROT;Acc:P29400] BY ORTHOLOGY TO:ENSGACT00000024870
16.7948 -18.22 0.000000000594948 700 16 10 27 [+] picture button
P97879-2 ENSRNOT00000005539 GRIP1_RAT Isoform 2 of P97879 - Rattus norvegicus (Rat) [Source:Uniprot/Varsplic;Acc:P97879-2]
17.3805 -18.9 0.00000000149618 700 10 11 13 [+] picture button
Col9a1 ENSRNOT00000018116 Collagen alpha-1(IX) chain (Fragment). [Source:Uniprot/SWISSPROT;Acc:P20850]
16.3864 -21.83 0.00000000263657 700 15 5 23 [+] picture button
Col6a2 ENSRNOT00000001695 Col6a2 protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q5EB88]
16.8969 -21.33 0.00000000448382 438 18 3 34 [+] picture button
Fem1b_predicted ENSRNOT00000009368 fem-1 homolog b [Source:RefSeq_peptide;Acc:NP_056137]fem-1 homolog b [Source:RefSeq_peptide;Acc:NP_056137] BY ORTHOLOGY TO:ENST00000306917
19.0018 -21.36 0.0000000125157 385 17 7 46 [+] picture button
RGD1562244_predicted ENSRNOT00000016837 SEC14 and spectrin domains 1 [Source:RefSeq_peptide;Acc:NP_835224]SEC14 and spectrin domains 1 [Source:RefSeq_peptide;Acc:NP_835224] BY ORTHOLOGY TO:ENST00000389480
17.0174 -17.06 0.0000000152961 1051 10 10 13 [+] picture button
Hdac4_predicted ENSRNOT00000027622 Histone deacetylase 4 (HD4). [Source:Uniprot/SWISSPROT;Acc:Q99P99]
17.7035 -17.35 0.0000000179166 583 17 7 24 [+] picture button
Adamts7 ENSRNOT00000037276 a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7 [Source:MarkerSymbol;Acc:MGI:1347346]
17.1124 -19.55 0.0000000207757 700 21 8 28 [+] picture button
E130014J05Rik ENSRNOT00000046775 RIKEN cDNA E130014J05 gene [Source:MarkerSymbol;Acc:MGI:2443298]
17.5936 -18.91 0.0000000340622 700 14 4 19 [+] picture button
Mad2l1bp ENSRNOT00000026331 MAD2L1 binding protein [Source:RefSeq_peptide;Acc:NP_001009699]
15.7446 -18.13 0.0000000383458 400 19 4 52 [+] picture button
Hbp1 ENSRNOT00000012004 HMG box-containing protein 1 (HMG box transcription factor 1) (High mobility group box transcription factor 1). [Source:Uniprot/SWISSPROT;Acc:Q62661]
17.6029 -24.41 0.0000000464818 1058 15 9 17 [+] picture button
Has3 ENSRNOT00000027422 hyaluronan synthase 3 [Source:RefSeq_peptide;Acc:NP_758822]
16.0063 -15.17 0.0000000719999 700 15 6 33 [+] picture button
Ifi30 ENSRNOT00000026225 interferon gamma inducible protein 30 [Source:RefSeq_peptide;Acc:NP_001025197]
19.9785 -25.01 0.0000000904478 413 16 6 38 [+] picture button
Arvcf ENSRNOT00000002585 armadillo repeat gene deleted in velo-cardio-facial syndrome [Source:MarkerSymbol;Acc:MGI:109620]
16.2827 -17.08 0.000000127966 700 14 5 29 [+] picture button
Bach2 ENSRNOT00000008309 BTB and CNC homology 2 [Source:MarkerSymbol;Acc:MGI:894679]
17.1267 -18.24 0.000000153955 700 21 9 34 [+] picture button
1700019D03Rik ENSRNOT00000059159 RIKEN cDNA 1700019D03 gene [Source:MarkerSymbol;Acc:MGI:1914330]
17.047 -19.74 0.00000015783 700 13 7 21 [+] picture button
Ireb2 ENSRNOT00000017900 Iron-responsive element-binding protein 2 (IRE-BP 2) (Iron regulatory protein 2) (IRP2). [Source:Uniprot/SWISSPROT;Acc:Q62751]
17.5506 -20.13 0.000000228504 868 16 9 24 [+] picture button
Narf ENSRNOT00000054920 Nuclear prelamin A recognition factor. [Source:Uniprot/SWISSPROT;Acc:Q2YDU6]
17.9421 -20.42 0.000000233245 700 14 5 19 [+] picture button
LOC498736 ENSRNOT00000023611 Tubulin beta-2A chain. [Source:Uniprot/SWISSPROT;Acc:P85108]
16.7144 -12.43 0.000000241838 189 11 9 29 [+] picture button
Col6a3 ENSRNOT00000026707 procollagen, type VI, alpha 3 [Source:MarkerSymbol;Acc:MGI:88461]
16.7766 -21.76 0.000000247284 710 16 8 23 [+] picture button
Atad3a ENSRNOT00000045053 ATPase family, AAA domain containing 3A [Source:RefSeq_peptide;Acc:NP_001030094]
16.8564 -14.1 0.000000363771 535 15 3 27 [+] picture button
Brwd3_predicted ENSRNOT00000057432 Bromodomain and WD repeat domain-containing protein 3. [Source:Uniprot/SWISSPROT;Acc:Q6RI45]Bromodomain and WD repeat domain-containing protein 3. [Source:Uniprot/SWISSPROT;Acc:Q6RI45] BY ORTHOLOGY TO:ENSOANT00000001176
16.449 -16.21 0.00000039307 700 20 7 28 [+] picture button
Usp52 ENSRNOT00000050792 PAB-dependent poly(A)-specific ribonuclease subunit 2 (EC 3.1.13.4) (Inactive ubiquitin carboxyl-terminal hydrolase 52). [Source:Uniprot/SWISSPROT;Acc:Q6IE70]
17.0087 -20.73 0.00000046957 700 17 5 25 [+] picture button
Pitpnm2_predicted ENSRNOT00000047911 Membrane-associated phosphatidylinositol transfer protein 2 (Phosphatidylinositol transfer protein, membrane-associated 2) (Pyk2 N-terminal domain-interacting receptor 3) (NIR-3). [Source:Uniprot/SWISSPROT;Acc:Q9BZ72]Membrane-associated phosphatidylinositol transfer protein 2 (Phosphatidylinositol transfer protein, membrane-associated 2) (Pyk2 N-terminal domain-interacting receptor 3) (NIR-3). [Source:Uniprot/SWISSPROT;Acc:Q9BZ72] BY ORTHOLOGY TO:ENST00000280562
16.179 -19.48 0.000000498419 700 15 6 21 [+] picture button
LOC314655 ENSRNOT00000011976 similar to a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 10 (LOC314655), mRNA [Source:RefSeq_dna;Acc:NM_001034930]
15.5567 -16.01 0.000000605049 700 19 4 26 [+] picture button
Chic2_predicted ENSRNOT00000003085 cysteine-rich hydrophobic domain 2 (chic1)cysteine-rich hydrophobic domain 2 (chic1) BY ORTHOLOGY TO:AAEL008924-RA
15.3033 -16.29 0.000000616868 700 27 10 36 [+] picture button
Bak1 ENSRNOT00000000576 BCL2-antagonist/killer 1 [Source:RefSeq_peptide;Acc:NP_446264]
16.4888 -18.7 0.000000724948 1060 16 6 21 [+] picture button
Cd244 ENSRNOT00000000053 Natural killer cell receptor 2B4 precursor (NKR2B4) (NK cell type I receptor protein 2B4) (CD244 antigen) (Non MHC restricted killing associated). [Source:Uniprot/SWISSPROT;Acc:Q9JLM2]
15.3861 -12.76 0.000001 700 15 1 10 [+] picture button
Col5a3 ENSRNOT00000027897 procollagen, type V, alpha 3 [Source:RefSeq_peptide;Acc:NP_068528]
17.2234 -20.56 0.00000119676 783 13 6 19 [+] picture button
Ppic ENSRNOT00000023485 peptidylprolyl isomerase C [Source:RefSeq_peptide;Acc:NP_001004215]
17.1683 -18.38 0.00000127201 648 16 6 25 [+] picture button
Xkr7 ENSRNOT00000012156 XK-related protein 7. [Source:Uniprot/SWISSPROT;Acc:Q5GH56]
16.6487 -18.44 0.00000134755 812 19 9 23 [+] picture button
Phf5a ENSRNOT00000005837 PHD finger-like domain-containing protein 5A (PHD finger-like domain protein 5A) (Splicing factor 3B-associated 14 kDa protein) (SF3b14b). [Source:Uniprot/SWISSPROT;Acc:P83871]
17.4356 -20.67 0.00000142549 522 16 4 32 [+] picture button
Col16a1 ENSRNOT00000045413 Col16a1 protein. [Source:Uniprot/SPTREMBL;Acc:Q568Y4]
17.7377 -17.14 0.00000169616 195 5 6 10 [+] picture button
Zbtb5_predicted ENSRNOT00000017046 Zinc finger and BTB domain-containing protein 5. [Source:Uniprot/SWISSPROT;Acc:O15062]Zinc finger and BTB domain-containing protein 5. [Source:Uniprot/SWISSPROT;Acc:O15062] BY ORTHOLOGY TO:ENSMMUT00000025145
17.1651 -21.01 0.00000182235 452 17 3 38 [+] picture button
Col3a1 ENSRNOT00000004956 Collagen alpha-1(III) chain precursor. [Source:Uniprot/SWISSPROT;Acc:P13941]
17.8514 -17.14 0.00000285587 275 8 7 18 [+] picture button
Mlf1_predicted ENSRNOT00000017151 Myeloid leukemia factor 1 (Myelodysplasia-myeloid leukemia factor 1). [Source:Uniprot/SWISSPROT;Acc:P58340]Myeloid leukemia factor 1 (Myelodysplasia-myeloid leukemia factor 1). [Source:Uniprot/SWISSPROT;Acc:P58340] BY ORTHOLOGY TO:ENSGALT00000039093
18.5336 -17.67 0.00000298084 189 12 8 40 [+] picture button
Phc1_predicted ENSRNOT00000020529 polyhomeotic-like 1 (Drosophila) [Source:MarkerSymbol;Acc:MGI:103248]polyhomeotic-like 1 (Drosophila) [Source:MarkerSymbol;Acc:MGI:103248] BY ORTHOLOGY TO:ENSMUST00000079560
16.179 -19.34 0.00000304098 700 15 6 24 [+] picture button
Usp22 ENSRNOT00000050061 ubiquitin specific peptidase 22 [Source:MarkerSymbol;Acc:MGI:2144157]
15.7604 -20.82 0.00000313884 1431 9 2 10 [+] picture button
Slc22a7 ENSRNOT00000025094 solute carrier family 22 member 7 [Source:RefSeq_peptide;Acc:NP_445989]
16.0753 -15.72 0.00000391348 700 17 5 24 [+] picture button
ENSRNOT00000005819 CDNA FLJ16635 fis, clone TESTI4025268, weakly similar to 77 kDa echinoderm microtubule-associated protein. [Source:Uniprot/SPTREMBL;Acc:Q6ZMW3]CDNA FLJ16635 fis, clone TESTI4025268, weakly similar to 77 kDa echinoderm microtubule-associated protein. [Source:Uniprot/SPTREMBL;Acc:Q6ZMW3] BY ORTHOLOGY TO:ENSOANT00000024635
17.8577 -27.1 0.00000404434 700 9 3 13 [+] picture button
RGD1562335_predicted ENSRNOT00000017349 CDNA FLJ10404 fis, clone NT2RM4000486 (Hypothetical protein DKFZp313I142) (FLJ10404 protein). [Source:Uniprot/SPTREMBL;Acc:Q9NW00]CDNA FLJ10404 fis, clone NT2RM4000486 (Hypothetical protein DKFZp313I142) (FLJ10404 protein). [Source:Uniprot/SPTREMBL;Acc:Q9NW00] BY ORTHOLOGY TO:SINFRUT00000128203
17.0745 -17.51 0.00000431956 368 15 8 49 [+] picture button
Ccne1 ENSRNOT00000020014 G1/S-specific cyclin-E1. [Source:Uniprot/SWISSPROT;Acc:P39949]
15.507 -13.55 0.00000498518 523 14 9 45 [+] picture button
COBA1_RAT ENSRNOT00000024138 Collagen alpha-1(XI) chain precursor (Fragment). [Source:Uniprot/SWISSPROT;Acc:P20909]
15.9182 -17.31 0.00000512005 1484 7 9 9 [+] picture button
O55168_RAT ENSRNOT00000025687 Phosphatidylinositol 3-kinase (Fragment). [Source:Uniprot/SPTREMBL;Acc:O55168]
15.6156 -15.56 0.00000515121 700 11 6 15 [+] picture button
RGD1305469_predicted ENSRNOT00000040381 Uncharacterized protein C22orf30. [Source:Uniprot/SPTREMBL;Acc:Q5THK1]Uncharacterized protein C22orf30. [Source:Uniprot/SPTREMBL;Acc:Q5THK1] BY ORTHOLOGY TO:ENSGALT00000011102
15.3057 -18.63 0.00000521954 700 14 6 25 [+] picture button
Aacs ENSRNOT00000001292 acetoacetyl-CoA synthetase [Source:RefSeq_peptide;Acc:NP_075592]
15.4325 -19.78 0.00000552436 1060 14 2 16 [+] picture button
RGD1308257 ENSRNOT00000025121 CDNA FLJ20703 fis, clone KAIA1965. [Source:Uniprot/SPTREMBL;Acc:Q9NWP4]CDNA FLJ20703 fis, clone KAIA1965. [Source:Uniprot/SPTREMBL;Acc:Q9NWP4] BY ORTHOLOGY TO:ENSMODT00000022922
16.6976 -16.75 0.00000619148 700 21 5 33 [+] picture button
LOC499617 ENSRNOT00000000101 similar to regulatory factor X-associated protein (LOC499617), mRNA [Source:RefSeq_dna;Acc:NM_001044263]
15.6847 -15.13 0.00000651512 852 15 5 23 [+] picture button
Elf2 ENSRNOT00000047635 E74-like factor 2 isoform 1 [Source:RefSeq_peptide;Acc:NP_001029081]
15.8767 -13.64 0.0000068394 1158 16 8 18 [+] picture button

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Download table: GFF TXT
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