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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Rattus norvegicus and rno-miR-124

991 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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Parp16 ENSRNOT00000045106 Poly [ADP-ribose] polymerase 16 (EC 2.4.2.30) (PARP-16). [Source:Uniprot/SWISSPROT;Acc:Q5U2Q4]
19.4829 -31.05 0.0000000000438369 700 15 7 24 [+] picture button
Sh3md2 ENSRNOT00000013816 putative scaffolding protein POSH [Source:RefSeq_peptide;Acc:NP_942059]
16.8897 -18.93 0.000000000138591 700 13 9 16 [+] picture button
LOC680419 ENSRNOT00000024086 Ras suppressor protein 1 (Rsu-1) (RSP-1). [Source:Uniprot/SWISSPROT;Acc:Q15404]Ras suppressor protein 1 (Rsu-1) (RSP-1). [Source:Uniprot/SWISSPROT;Acc:Q15404] BY ORTHOLOGY TO:ENSGACT00000002162
16.3185 -16.32 0.00000000128224 700 19 4 34 [+] picture button
Pccb ENSRNOT00000021657 Propionyl-CoA carboxylase beta chain, mitochondrial precursor (EC 6.4.1.3) (PCCase subunit beta) (Propanoyl-CoA:carbon dioxide ligase subunit beta). [Source:Uniprot/SWISSPROT;Acc:P07633]
16.2869 -18.29 0.00000000295797 442 18 5 32 [+] picture button
Cpox ENSRNOT00000002257 coproporphyrinogen oxidase [Source:RefSeq_peptide;Acc:NP_001032172]
15.5576 -21.99 0.00000000459583 1353 10 3 10 [+] picture button
Dnajc1 ENSRNOT00000000162 DnaJ (Hsp40) homolog, subfamily C, member 1 [Source:MarkerSymbol;Acc:MGI:103268]
18.2769 -20.01 0.00000000481149 143 8 8 28 [+] picture button
Acaa2 ENSRNOT00000018850 3-ketoacyl-CoA thiolase, mitochondrial (EC 2.3.1.16) (Beta- ketothiolase) (Acetyl-CoA acyltransferase) (Mitochondrial 3-oxoacyl- CoA thiolase). [Source:Uniprot/SWISSPROT;Acc:P13437]
17.2833 -18.74 0.00000000894639 700 15 5 26 [+] picture button
Ptbp2 ENSRNOT00000015036 Polypyrimidine tract-binding protein 2 (Neural polypyrimidine tract- binding protein) (PTB-like protein). [Source:Uniprot/SWISSPROT;Acc:Q66H20]
16.3752 -19.1 0.000000010503 700 18 7 32 [+] picture button
Thop1 ENSRNOT00000027045 Thimet oligopeptidase (EC 3.4.24.15) (Endo-oligopeptidase A) (Endopeptidase 24.15) (PZ-peptidase) (Soluble metallo-endopeptidase). [Source:Uniprot/SWISSPROT;Acc:P24155]
17.5872 -19.72 0.0000000106172 196 9 3 36 [+] picture button
Slc31a2 ENSRNOT00000019379 solute carrier family 31, member 2 [Source:RefSeq_peptide;Acc:NP_001028865]
16.6548 -17.87 0.0000000373254 700 20 4 33 [+] picture button
Kcnk10 ENSRNOT00000005175 Potassium channel subfamily K member 10 (Outward rectifying potassium channel protein TREK-2) (TREK-2 K(+) channel subunit). [Source:Uniprot/SWISSPROT;Acc:Q9JIS4]
16.0965 -21.72 0.0000000414789 700 19 9 36 [+] picture button
Gamt ENSRNOT00000060722 Guanidinoacetate N-methyltransferase (EC 2.1.1.2). [Source:Uniprot/SWISSPROT;Acc:P10868]
17.0124 -14.27 0.0000000507734 163 12 5 38 [+] picture button
Gga2 ENSRNOT00000025309 Gga2 protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q4G038]
17.3133 -22.5 0.0000000594652 919 19 5 22 [+] picture button
Bckdha ENSRNOT00000027995 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial precursor (EC 1.2.4.4) (Branched-chain alpha-keto acid dehydrogenase E1 component alpha chain) (BCKDH E1-alpha) (Fragment). [Source:Uniprot/SWISSPROT;Acc:P11960]
16.2258 -17.93 0.0000000706938 316 18 6 68 [+] picture button
NP_001073408.1 ENSRNOT00000049538 RGD1306274 protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q5I0G9]
16.4258 -17.98 0.0000000826405 459 16 6 37 [+] picture button
ITFG3_RAT ENSRNOT00000038962 Protein ITFG3. [Source:Uniprot/SWISSPROT;Acc:Q5M7W6]
17.0768 -25.38 0.000000112162 833 19 4 26 [+] picture button
Apba3 ENSRNOT00000027784 Amyloid beta A4 precursor protein-binding family A member 3 (Neuron- specific X11L2 protein) (Neuronal Munc18-1-interacting protein 3) (Mint-3) (Adapter protein X11gamma). [Source:Uniprot/SWISSPROT;Acc:O70248]
17.4722 -19.67 0.000000130021 145 9 8 27 [+] picture button
Pnpla2_predicted ENSRNOT00000025319 Patatin-like phospholipase domain-containing protein 2 (EC 3.1.1.3) (Adipose triglyceride lipase). [Source:Uniprot/SWISSPROT;Acc:P0C548]
16.8447 -22.93 0.000000315909 667 19 5 31 [+] picture button
Q2LAM0_RAT ENSRNOT00000025625 Fatty acid 2-hydroxylase (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q2LAM0]
16.2358 -20.79 0.000000410379 700 16 5 20 [+] picture button
Hadhsc ENSRNOT00000014658 Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial precursor (EC 1.1.1.35) (Short chain 3-hydroxyacyl-CoA dehydrogenase) (HCDH) (Medium and short chain L-3-hydroxyacyl-coenzyme A dehydrogenase). [Source:Uniprot/SWISSPROT;Acc:Q9WVK7]
17.5298 -21.15 0.000000572274 686 18 6 25 [+] picture button
Lrig1_predicted ENSRNOT00000017384 Leucine-rich repeats and immunoglobulin-like domains protein 1 precursor (LIG-1). [Source:Uniprot/SWISSPROT;Acc:Q96JA1]Leucine-rich repeats and immunoglobulin-like domains protein 1 precursor (LIG-1). [Source:Uniprot/SWISSPROT;Acc:Q96JA1] BY ORTHOLOGY TO:SINFRUT00000132578
16.131 -18.9 0.000000855003 700 18 6 28 [+] picture button
Nxn_predicted ENSRNOT00000011403 nucleoredoxin [Source:RefSeq_peptide;Acc:NP_001018431]nucleoredoxin [Source:RefSeq_peptide;Acc:NP_001018431] BY ORTHOLOGY TO:ENSDART00000101803
15.9756 -17.79 0.000001023 598 19 11 34 [+] picture button
Slc30a7 ENSRNOT00000019172 Slc30a7 protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q5BJM8]
15.6719 -18.55 0.00000116428 681 20 8 33 [+] picture button
Dhrs1 ENSRNOT00000027511 dehydrogenase/reductase (SDR family) member 1 [Source:RefSeq_peptide;Acc:NP_001007622]
17.5872 -18.43 0.00000124363 260 14 5 42 [+] picture button
Mvp ENSRNOT00000027360 Major vault protein (MVP). [Source:Uniprot/SWISSPROT;Acc:Q62667]
18.6217 -21.76 0.00000156174 109 6 3 22 [+] picture button
Gcdh_predicted ENSRNOT00000004570 glutaryl-Coenzyme A dehydrogenase [Source:MarkerSymbol;Acc:MGI:104541]glutaryl-Coenzyme A dehydrogenase [Source:MarkerSymbol;Acc:MGI:104541] BY ORTHOLOGY TO:ENSMUST00000003907
16.2491 -17.08 0.00000196436 543 22 7 42 [+] picture button
LOC686781 ENSRNOT00000047105 hypothetical protein LOC505818 [Source:RefSeq_peptide;Acc:NP_001068692]hypothetical protein LOC505818 [Source:RefSeq_peptide;Acc:NP_001068692] BY ORTHOLOGY TO:ENSBTAT00000027570
15.6073 -15.31 0.00000196945 700 19 5 26 [+] picture button
Gria4 ENSRNOT00000009542 Glutamate receptor 4 precursor (GluR-4) (GluR4) (GluR-D) (Glutamate receptor ionotropic, AMPA 4) (AMPA-selective glutamate receptor 4). [Source:Uniprot/SWISSPROT;Acc:P19493]
16.9928 -16.15 0.00000197168 631 19 9 28 [+] picture button
Dsg2_predicted ENSRNOT00000022270 Desmoglein-2 precursor (HDGC). [Source:Uniprot/SWISSPROT;Acc:Q14126]Desmoglein-2 precursor (HDGC). [Source:Uniprot/SWISSPROT;Acc:Q14126] BY ORTHOLOGY TO:ENSPTRT00000018263
15.8359 -14.72 0.00000223975 700 16 3 21 [+] picture button
RGD1305890 ENSRNOT00000012826 Out at first protein homolog precursor. [Source:Uniprot/SWISSPROT;Acc:Q6AYE5]
15.8625 -17.16 0.00000239722 681 16 3 22 [+] picture button
Gria2 ENSRNOT00000039610 Glutamate receptor 2 precursor (GluR-2) (GluR-B) (GluR-K2) (Glutamate receptor ionotropic, AMPA 2) (AMPA-selective glutamate receptor 2). [Source:Uniprot/SWISSPROT;Acc:P19491]
17.1864 -18.33 0.00000251886 521 16 7 29 [+] picture button
Hic1 ENSRNOT00000004143 hypermethylated in cancer 1 [Source:MarkerSymbol;Acc:MGI:1338010]
16.1973 -21.12 0.0000028126 700 19 7 32 [+] picture button
Irxl1_predicted ENSRNOT00000025623 Homeobox protein Mohawk. [Source:Uniprot/SWISSPROT;Acc:Q8IYA7]Homeobox protein Mohawk. [Source:Uniprot/SWISSPROT;Acc:Q8IYA7] BY ORTHOLOGY TO:SINFRUT00000151281
16.3469 -17.8 0.0000034917 700 14 6 27 [+] picture button
Lhx2_predicted ENSRNOT00000014452 LIM/homeobox protein Lhx2 (Homeobox protein LH-2). [Source:Uniprot/SWISSPROT;Acc:P36198]
18.0766 -20.98 0.00000411116 411 17 10 50 [+] picture button
LOC367113 ENSRNOT00000007867 zgc:101523 (zgc:101523), mRNA [Source:RefSeq_dna;Acc:NM_001013445]zgc:101523 (zgc:101523), mRNA [Source:RefSeq_dna;Acc:NM_001013445] BY ORTHOLOGY TO:ENSDART00000029092
18.3918 -22.79 0.00000413717 235 13 7 36 [+] picture button
Snx6_predicted ENSRNOT00000007300 Sorting nexin-6 (TRAF4-associated factor 2). [Source:Uniprot/SWISSPROT;Acc:Q9UNH7]Sorting nexin-6 (TRAF4-associated factor 2). [Source:Uniprot/SWISSPROT;Acc:Q9UNH7] BY ORTHOLOGY TO:ENSORLT00000012932
17.1992 -22.06 0.00000455244 700 18 3 25 [+] picture button
RGD1561422_predicted ENSRNOT00000009990 PREDICTED: Gallus gallus similar to Activating signal cointegrator 1 complex subunit 2 (LOC417016), mRNA. [Source:RefSeq_dna;Acc:XR_026991]PREDICTED: Gallus gallus similar to Activating signal cointegrator 1 complex subunit 2 (LOC417016), mRNA. [Source:RefSeq_dna;Acc:XR_026991] BY ORTHOLOGY TO:ENSGALT00000013083
15.9779 -18.96 0.00000490497 90 3 4 12 [+] picture button
Ptpn9 ENSRNOT00000023831 Tyrosine-protein phosphatase non-receptor type 9 (EC 3.1.3.48). [Source:Uniprot/SWISSPROT;Acc:Q641Z2]
18.9666 -21.84 0.00000739096 255 14 9 50 [+] picture button
Flot1 ENSRNOT00000001098 Flotillin-1 (Reggie-2) (REG-2). [Source:Uniprot/SWISSPROT;Acc:Q9Z1E1]
17.5872 -14.8 0.00000779829 238 12 7 36 [+] picture button
Tor3a ENSRNOT00000005726 Torsin-3A precursor (Torsin family 3 member A). [Source:Uniprot/SWISSPROT;Acc:Q5M936]
16.5566 -17.08 0.00000804966 618 21 6 31 [+] picture button
Ptprz1 ENSRNOT00000008719 Receptor-type tyrosine-protein phosphatase zeta precursor (EC 3.1.3.48) (R-PTP-zeta) (Phosphacan) (3F8 chondroitin sulfate proteoglycan) (3H1 keratan sulfate proteoglycan). [Source:Uniprot/SWISSPROT;Acc:Q62656]
16.9895 -21.75 0.00000813004 700 18 9 25 [+] picture button
Narg2 ENSRNOT00000013742 NMDA receptor-regulated gene 2 [Source:MarkerSymbol;Acc:MGI:2135947]
15.8168 -17.64 0.00000885139 700 15 4 20 [+] picture button
4732435N03Rik ENSRNOT00000017822 RIKEN cDNA 4732435N03 gene [Source:MarkerSymbol;Acc:MGI:2442354]
17.4722 -17.95 0.00000890876 127 4 2 11 [+] picture button
Limd1_predicted ENSRNOT00000006554 LIM domain-containing protein 1. [Source:Uniprot/SWISSPROT;Acc:Q9UGP4]LIM domain-containing protein 1. [Source:Uniprot/SWISSPROT;Acc:Q9UGP4] BY ORTHOLOGY TO:ENST00000273317
16.6402 -13.44 0.0000100951 411 22 5 57 [+] picture button
RGD1305007 ENSRNOT00000054925 similar to RIKEN cDNA 1110031I02 (RGD1305007), mRNA [Source:RefSeq_dna;Acc:NM_001013976]
16.6676 -16.6 0.0000129312 234 13 6 66 [+] picture button
RGD1560603_predicted ENSRNOT00000043666 PREDICTED: Gallus gallus similar to mitogen-activated protein kinase kinase kinase 15 (LOC418609), mRNA. [Source:RefSeq_dna;Acc:XR_027145]PREDICTED: Gallus gallus similar to mitogen-activated protein kinase kinase kinase 15 (LOC418609), mRNA. [Source:RefSeq_dna;Acc:XR_027145] BY ORTHOLOGY TO:ENSGALT00000026498
16.7916 -16.52 0.0000138527 357 17 4 35 [+] picture button
Serinc2 ENSRNOT00000017577 serine incorporator 2 [Source:RefSeq_peptide;Acc:NP_001026826]
18.3918 -19.36 0.0000141908 260 7 5 21 [+] picture button
Slco5a1_predicted ENSRNOT00000011940 Solute carrier organic anion transporter family member 5A1 (Solute carrier family 21 member 15) (Organic anion transporter polypeptide- related protein 4) (OATP-RP4) (OATPRP4). [Source:Uniprot/SWISSPROT;Acc:Q9H2Y9]Solute carrier organic anion transporter family member 5A1 (Solute carrier family 21 member 15) (Organic anion transporter polypeptide- related protein 4) (OATP-RP4) (OATPRP4). [Source:Uniprot/SWISSPROT;Acc:Q9H2Y9] BY ORTHOLOGY TO:ENSMMUT00000012266
16.2477 -19.49 0.0000152698 511 19 6 29 [+] picture button
Gss ENSRNOT00000025657 Glutathione synthetase (EC 6.3.2.3) (Glutathione synthase) (GSH synthetase) (GSH-S). [Source:Uniprot/SWISSPROT;Acc:P46413]
15.8551 -16.86 0.0000155947 413 19 7 40 [+] picture button
Slc27a1 ENSRNOT00000024659 Long-chain fatty acid transport protein 1 (EC 6.2.1.-) (Fatty acid transport protein 1) (FATP-1) (Solute carrier family 27 member 1). [Source:Uniprot/SWISSPROT;Acc:P97849]
15.6437 -17.12 0.0000182004 1071 11 2 11 [+] picture button

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Download table: GFF TXT
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