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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Takifugu rubripes and fru-miR-29a

839 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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COL4A5 SINFRUT00000127905 Collagen alpha-5(IV) chain precursor. [Source:Uniprot/SWISSPROT;Acc:P29400]
17.9466 -16.18 0.000000000594948 400 3 10 6 [+] picture button
GRIP1 SINFRUT00000137030 Glutamate receptor-interacting protein 1 (GRIP1 protein). [Source:Uniprot/SWISSPROT;Acc:Q9Y3R0]
17.1759 -16.7 0.00000000149618 400 5 11 5 [+] picture button
COL4A1 SINFRUT00000178676 Collagen alpha-1(IV) chain precursor (Arresten). [Source:Uniprot/SWISSPROT;Acc:P02462]
16.9557 -16.69 0.00000000927711 400 6 4 8 [+] picture button
LOXL4 (2 of 2) SINFRUT00000179696 Lysyl oxidase homolog 4 precursor (EC 1.4.3.-) (Lysyl oxidase-like protein 4) (Lysyl oxidase-related protein C). [Source:Uniprot/SWISSPROT;Acc:Q96JB6]
16.7355 -11.77 0.0000000676529 400 4 3 7 [+] picture button
TUBB2B SINFRUT00000128450 Tubulin beta-2B chain. [Source:Uniprot/SWISSPROT;Acc:Q9BVA1]
16.5153 -18.71 0.000000241838 400 8 2 9 [+] picture button
FIGN (1 of 2) SINFRUT00000178748 Fidgetin. [Source:Uniprot/SWISSPROT;Acc:Q5HY92]
17.2584 -17.92 0.000000277854 400 6 10 5 [+] picture button
Q5TF58_HUMAN SINFRUT00000179404 Novel protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q5TF58]
17.7659 -19.01 0.00000056273 400 5 6 4 [+] picture button
ADAMTS10 SINFRUT00000157951 ADAMTS-10 precursor (EC 3.4.24.-) (A disintegrin and metalloproteinase with thrombospondin motifs 10) (ADAM-TS 10) (ADAM-TS10) (Fragment). [Source:Uniprot/SWISSPROT;Acc:Q9H324]
16.1198 -13.49 0.000000605049 400 7 5 6 [+] picture button
ITGA5 (2 of 2) SINFRUT00000170409 Integrin alpha-5 precursor (Fibronectin receptor subunit alpha) (Integrin alpha-F) (VLA-5) (CD49e antigen) [Contains: Integrin alpha-5 heavy chain; Integrin alpha-5 light chain]. [Source:Uniprot/SWISSPROT;Acc:P08648]
16.1323 -17.11 0.000000617421 400 6 4 10 [+] picture button
ING4 SINFRUT00000156111 Inhibitor of growth protein 4 (p29ING4). [Source:Uniprot/SWISSPROT;Acc:Q9UNL4]
18.1516 -14.62 0.000000911669 400 7 3 7 [+] picture button
CUGBP1 (3 of 3) SINFRUT00000178664 CUG triplet repeat RNA-binding protein 1 (CUG-BP1) (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding protein) (EDEN-BP). [Source:Uniprot/SWISSPROT;Acc:Q92879]
16.2951 -17.36 0.000001 400 9 1 3 [+] picture button
SINFRUT00000182961 NOT ANNOTATED
16.2951 -17.36 0.000001 400 9 1 4 [+] picture button
FAM91A1 SINFRUT00000131155 Protein FAM91A1. [Source:Uniprot/SWISSPROT;Acc:Q658Y4]
17.1183 -22.23 0.00000110996 400 7 3 12 [+] picture button
COL5A3 (2 of 2) SINFRUT00000134371 Collagen alpha-3(V) chain precursor. [Source:Uniprot/SWISSPROT;Acc:P25940]
17.133 -14.81 0.00000119676 400 6 2 8 [+] picture button
TNIP2 SINFRUT00000138277 A20-binding inhibitor of NF-kappaB activation 2 [Source:RefSeq_peptide;Acc:NP_077285]
17.9466 -17.74 0.0000015031 400 6 4 10 [+] picture button
NP_060229.2 SINFRUT00000131787 CDNA FLJ20309 fis, clone HEP07296. [Source:Uniprot/SPTREMBL;Acc:Q9NXD5]
15.8547 -16.9 0.00000264446 400 6 7 6 [+] picture button
SMOX SINFRUT00000165956 Spermine oxidase (EC 1.5.3.-) (Polyamine oxidase 1) (PAO-1) (PAOh1). [Source:Uniprot/SWISSPROT;Acc:Q9NWM0]
17.1759 -18.98 0.00000265447 400 8 5 10 [+] picture button
OCA2 SINFRUT00000162273 P protein (Melanocyte-specific transporter protein) (Pink-eyed dilution protein homolog). [Source:Uniprot/SWISSPROT;Acc:Q04671]
17.1245 -20.89 0.00000267677 400 3 2 4 [+] picture button
BUD31 SINFRUT00000135999 Protein BUD31 homolog (Protein G10 homolog) (EDG-2). [Source:Uniprot/SWISSPROT;Acc:P41223]
16.2951 -16.89 0.00000309861 400 4 4 5 [+] picture button
FAM119A SINFRUT00000134571 family with sequence similarity 119, member A (FAM119A), mRNA [Source:RefSeq_dna;Acc:NM_145280]
16.4052 -16.94 0.00000431926 400 5 2 9 [+] picture button
Q9NW00_HUMAN SINFRUT00000128203 CDNA FLJ10404 fis, clone NT2RM4000486 (Hypothetical protein DKFZp313I142) (FLJ10404 protein). [Source:Uniprot/SPTREMBL;Acc:Q9NW00]
19.5315 -17 0.00000431956 400 6 3 8 [+] picture button
ATAD5 SINFRUT00000179758 chromosome fragility associated gene 1 [Source:RefSeq_peptide;Acc:NP_079133]
16.2951 -15.88 0.0000045699 400 5 2 7 [+] picture button
COL11A1 (2 of 2) SINFRUT00000155693 Collagen alpha-1(XI) chain precursor. [Source:Uniprot/SWISSPROT;Acc:P12107]
16.9006 -17.83 0.00000512005 400 4 10 6 [+] picture button
DNMT3A (2 of 2) SINFRUT00000150700 DNA (cytosine-5)-methyltransferase 3A (EC 2.1.1.37) (Dnmt3a) (DNA methyltransferase HsaIIIA) (DNA MTase HsaIIIA) (M.HsaIIIA). [Source:Uniprot/SWISSPROT;Acc:Q9Y6K1]
17.565 -15.87 0.00000553381 400 6 3 10 [+] picture button
SBK1 SINFRUT00000148732 Serine/threonine-protein kinase SBK1 (EC 2.7.11.1) (SH3-binding kinase 1). [Source:Uniprot/SWISSPROT;Acc:Q52WX2]
16.4052 -17.45 0.00000760169 400 4 4 6 [+] picture button
SLMO2 (2 of 2) SINFRUT00000180163 Uncharacterized protein C20orf45. [Source:Uniprot/SWISSPROT;Acc:Q9Y3B1]
16.185 -16.82 0.00000793676 400 3 3 8 [+] picture button
PTCH1 SINFRUT00000154679 Protein patched homolog 1 (PTC1) (PTC). [Source:Uniprot/SWISSPROT;Acc:Q13635]
16.2951 -14.56 0.000008523 400 4 4 5 [+] picture button
CXXC6 SINFRUT00000149238 CXXC-type zinc finger protein 6 (Leukemia-associated protein with a CXXC domain). [Source:Uniprot/SWISSPROT;Acc:Q8NFU7]
18.11 -17.21 0.00000926551 400 10 6 13 [+] picture button
ULK3 SINFRUT00000182312 Serine/threonine-protein kinase ULK3 (EC 2.7.11.1) (Unc-51-like kinase 3). [Source:Uniprot/SWISSPROT;Acc:Q6PHR2]
17.3966 -19.9 0.0000115639 400 8 1 6 [+] picture button
RPL38 SINFRUT00000181985 60S ribosomal protein L38. [Source:Uniprot/SWISSPROT;Acc:P63173]
16.6908 -16.39 0.0000127773 400 4 1 4 [+] picture button
GRHL1 SINFRUT00000170192 Grainyhead-like protein 1 homolog (Transcription factor CP2-like 2) (Transcription factor LBP-32) (NH32) (Mammalian grainyhead). [Source:Uniprot/SWISSPROT;Acc:Q9NZI5]
16.461 -15.58 0.00001335 400 5 3 12 [+] picture button
KRAS SINFRUT00000181932 GTPase KRas precursor (K-Ras 2) (Ki-Ras) (c-K-ras) (c-Ki-ras). [Source:Uniprot/SWISSPROT;Acc:P01116]
16.7355 -17.75 0.0000142293 400 4 4 4 [+] picture button
CYP7A1 SINFRUT00000157747 Cytochrome P450 7A1 (Cholesterol 7-alpha-monooxygenase) (CYPVII) (EC 1.14.13.17) (Cholesterol 7-alpha-hydroxylase). [Source:Uniprot/SWISSPROT;Acc:P22680]
17.286 -15.01 0.0000149072 400 5 2 8 [+] picture button
ASH2L SINFRUT00000160738 Set1/Ash2 histone methyltransferase complex subunit ASH2 (ASH2-like protein). [Source:Uniprot/SWISSPROT;Acc:Q9UBL3]
16.4052 -12.6 0.0000176773 400 3 2 3 [+] picture button
RPS6KB1 (1 of 2) SINFRUT00000157825 Ribosomal protein S6 kinase beta-1 (EC 2.7.11.1) (Ribosomal protein S6 kinase I) (S6K) (S6K1) (70 kDa ribosomal protein S6 kinase 1) (p70 S6 kinase alpha) (p70(S6K)-alpha) (p70-S6K) (P70S6K) (p70-alpha). [Source:Uniprot/SWISSPROT;Acc:P23443]
16.9983 -13.45 0.0000193145 400 4 4 4 [+] picture button
ELOVL1 (2 of 2) SINFRUT00000147851 Elongation of very long chain fatty acids protein 1. [Source:Uniprot/SWISSPROT;Acc:Q9BW60]
16.8456 -15.08 0.0000260588 400 5 4 8 [+] picture button
KLHDC3 SINFRUT00000143463 Kelch domain-containing protein 3 (Protein Peas) (Testis intracellular mediator protein). [Source:Uniprot/SWISSPROT;Acc:Q9BQ90]
16.2951 -14.9 0.0000264764 400 5 2 12 [+] picture button
PSMD7 SINFRUT00000136251 26S proteasome non-ATPase regulatory subunit 7 (26S proteasome regulatory subunit rpn8) (26S proteasome regulatory subunit S12) (Proteasome subunit p40) (Mov34 protein homolog). [Source:Uniprot/SWISSPROT;Acc:P51665]
17.1638 -14.92 0.0000268372 400 6 4 6 [+] picture button
FAM40B SINFRUT00000140373 Protein FAM40B. [Source:Uniprot/SWISSPROT;Acc:Q9ULQ0]
16.5521 -15.05 0.0000309679 400 3 2 5 [+] picture button
ECT2 SINFRUT00000128139 ECT2 protein (Epithelial cell-transforming sequence 2 oncogene). [Source:Uniprot/SWISSPROT;Acc:Q9H8V3]
16.7355 -17.43 0.0000326987 400 5 5 8 [+] picture button
LEF1 SINFRUT00000163432 Lymphoid enhancer-binding factor 1 (LEF-1) (T cell-specific transcription factor 1-alpha) (TCF1-alpha). [Source:Uniprot/SWISSPROT;Acc:Q9UJU2]
17.1759 -14.35 0.000033019 400 5 2 9 [+] picture button
GLO1 (1 of 2) SINFRUT00000156322 Lactoylglutathione lyase (EC 4.4.1.5) (Methylglyoxalase) (Aldoketomutase) (Glyoxalase I) (Glx I) (Ketone-aldehyde mutase) (S-D- lactoylglutathione methylglyoxal lyase). [Source:Uniprot/SWISSPROT;Acc:Q04760]
17.6163 -16.9 0.000033639 400 9 2 14 [+] picture button
HELLS SINFRUT00000156551 Lymphoid-specific helicase (EC 3.6.1.-) (SWI/SNF2-related matrix- associated actin-dependent regulator of chromatin subfamily A member 6) (Proliferation-associated SNF2-like protein). [Source:Uniprot/SWISSPROT;Acc:Q9NRZ9]
15.9648 -13.58 0.0000392564 400 8 2 10 [+] picture button
COL10A1 (2 of 2) SINFRUT00000147858 Collagen alpha-1(X) chain precursor. [Source:Uniprot/SWISSPROT;Acc:Q03692]
17.6163 -17.65 0.0000429088 400 7 3 6 [+] picture button
C14orf28 SINFRUT00000145064 Uncharacterized protein C14orf28 (Dopamine receptor-interacting protein 1). [Source:Uniprot/SWISSPROT;Acc:Q4W4Y0]
19.2678 -18.93 0.0000432616 400 4 2 4 [+] picture button
ADSL SINFRUT00000177480 Adenylosuccinate lyase (EC 4.3.2.2) (Adenylosuccinase) (ASL) (ASASE). [Source:Uniprot/SWISSPROT;Acc:P30566]
16.6908 -13 0.0000433626 400 5 3 7 [+] picture button
DNAL1 SINFRUT00000182423 Dynein light chain 1, axonemal. [Source:Uniprot/SWISSPROT;Acc:Q4LDG9]
16.2951 -15.8 0.0000485984 400 6 1 8 [+] picture button
SINFRUT00000172340 Homolog of Homo sapiens "Tumor necrosis factor receptor superfamily member 1A precursor [Source:IPI;Acc:IPI00018880]"
16.7247 -13.94 0.0000519467 400 5 1 5 [+] picture button
ITPKC (2 of 2) SINFRUT00000168240 Inositol-trisphosphate 3-kinase C (EC 2.7.1.127) (Inositol 1,4,5- trisphosphate 3-kinase C) (InsP 3-kinase C) (IP3K-C). [Source:Uniprot/SWISSPROT;Acc:Q96DU7]
17.8365 -17.5 0.0000582363 400 2 3 2 [+] picture button
SINFRUT00000180633 Homolog of Homo sapiens "Desmoglein-2 precursor [Source:IPI;Acc:IPI00028931]"
17.6163 -19.16 0.0000602088 400 4 3 6 [+] picture button

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Download table: GFF TXT
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