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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Takifugu rubripes and fru-miR-183

743 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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MAP4K5 SINFRUT00000173507 Mitogen-activated protein kinase kinase kinase kinase 5 (EC 2.7.11.1) (MAPK/ERK kinase kinase kinase 5) (MEK kinase kinase 5) (MEKKK 5) (Kinase homologous to SPS1/STE20) (KHS). [Source:Uniprot/SWISSPROT;Acc:Q9Y4K4]
16.1061 -16.49 0.0000000910439 400 4 3 6 [+] picture button
BXDC5 SINFRUT00000148590 Ribosome production factor 1 (Ribosome biogenesis protein RPF1) (Brix domain-containing protein 5). [Source:Uniprot/SWISSPROT;Acc:Q9H9Y2]
16.7635 -16.22 0.000000610553 400 7 1 12 [+] picture button
EDEM1 SINFRUT00000181314 ER degradation-enhancing alpha-mannosidase-like 1. [Source:Uniprot/SWISSPROT;Acc:Q92611]
16.7635 -16.21 0.00000160262 400 6 4 6 [+] picture button
EI24 SINFRUT00000163325 Etoposide-induced protein 2.4 (p53-induced protein 8). [Source:Uniprot/SWISSPROT;Acc:O14681]
17.3114 -19.72 0.0000016182 400 6 2 8 [+] picture button
RFX2 SINFRUT00000136651 DNA-binding protein RFX2. [Source:Uniprot/SWISSPROT;Acc:P48378]
18.3391 -19.41 0.00000240319 400 5 5 10 [+] picture button
DOPEY1 SINFRUT00000158455 dopey family member 1 [Source:RefSeq_peptide;Acc:NP_055833]
16.8731 -23.37 0.00000293688 400 4 4 4 [+] picture button
RAB40C (2 of 2) SINFRUT00000134905 Ras-related protein Rab-40C (SOCS box-containing protein RAR3) (Rar- like protein). [Source:Uniprot/SWISSPROT;Acc:Q96S21]
17.64 -21.12 0.0000040318 400 8 4 9 [+] picture button
PGAM5 SINFRUT00000182237 Bcl-XL-binding protein v68 [Source:RefSeq_peptide;Acc:NP_612642]
16.2979 -15.23 0.00000483283 400 7 3 9 [+] picture button
ZFPM2 SINFRUT00000131969 Zinc finger protein ZFPM2 (Zinc finger protein multitype 2) (Friend of GATA protein 2) (FOG-2) (hFOG-2). [Source:Uniprot/SWISSPROT;Acc:Q8WW38]
15.9039 -16.26 0.00000641027 400 6 14 11 [+] picture button
SRP14 SINFRUT00000145095 Signal recognition particle 14 kDa protein (SRP14) (18 kDa Alu RNA- binding protein). [Source:Uniprot/SWISSPROT;Acc:P37108]
16.8534 -17.95 0.00000689959 400 4 2 6 [+] picture button
HIP1 SINFRUT00000148289 Huntingtin-interacting protein 1 (HIP-I). [Source:Uniprot/SWISSPROT;Acc:O00291]
16.4348 -20.25 0.0000102155 400 5 3 4 [+] picture button
PLEKHA3 SINFRUT00000151930 Pleckstrin homology domain-containing family A member 3 (Phosphoinositol 4-phosphate adaptor protein 1) (FAPP-1). [Source:Uniprot/SWISSPROT;Acc:Q9HB20]
16.654 -19.66 0.0000148393 400 5 2 4 [+] picture button
C6orf166 (2 of 3) SINFRUT00000157190 Uncharacterized protein C6orf166. [Source:Uniprot/SWISSPROT;Acc:Q53H80]
17.8592 -14.86 0.0000154411 400 6 4 7 [+] picture button
TOMM7 SINFRUT00000161037 Probable mitochondrial import receptor subunit TOM7 homolog (Translocase of outer membrane 7 kDa subunit homolog). [Source:Uniprot/SWISSPROT;Acc:Q9P0U1]
17.2018 -15.05 0.0000166172 400 7 1 11 [+] picture button
NEIL3 SINFRUT00000132760 Endonuclease VIII-like 3 (Nei-like 3) (DNA glycosylase FPG2). [Source:Uniprot/SWISSPROT;Acc:Q8TAT5]
17.1301 -18.86 0.0000167228 400 3 1 7 [+] picture button
HPCAL1 SINFRUT00000147829 Hippocalcin-like protein 1 (Visinin-like protein 3) (VILIP-3) (Calcium-binding protein BDR-1) (HLP2). [Source:Uniprot/SWISSPROT;Acc:P37235]
17.5305 -22.62 0.0000224128 400 4 1 5 [+] picture button
FST SINFRUT00000154939 Follistatin precursor (FS) (Activin-binding protein). [Source:Uniprot/SWISSPROT;Acc:P19883]
16.4348 -18.83 0.0000256112 400 7 11 12 [+] picture button
SINFRUT00000138843 Homolog of Brachydanio rerio "Interferon-inducible double stranded RNA dependent protein-kinase inhibitor. [Source:Uniprot/SPTREMBL;Acc:Q9DDS8]"
17.059 -13.84 0.0000261719 400 2 1 2 [+] picture button
TMEM41A (2 of 2) SINFRUT00000142653 Transmembrane protein 41A precursor. [Source:Uniprot/SWISSPROT;Acc:Q96HV5]
16.0321 -13.98 0.0000262588 400 8 2 11 [+] picture button
KIAA1539 SINFRUT00000181573 KIAA1539 (KIAA1539), mRNA [Source:RefSeq_dna;Acc:NM_025182]
17.304 -23.23 0.0000290444 400 3 4 4 [+] picture button
SLC35A5 SINFRUT00000152158 solute carrier family 35, member A5 [Source:RefSeq_peptide;Acc:NP_060415]
17.0203 -18.93 0.0000298216 400 4 2 4 [+] picture button
PEF1 SINFRUT00000132711 Peflin (PEF protein with a long N-terminal hydrophobic domain) (Penta- EF hand domain-containing protein 1). [Source:Uniprot/SWISSPROT;Acc:Q9UBV8]
18.0783 -24.62 0.0000298828 400 7 2 9 [+] picture button
LOC729956 (2 of 2) SINFRUT00000148856 RIKEN cDNA D430041B17 gene [Source:MarkerSymbol;Acc:MGI:3605641]RIKEN cDNA D430041B17 gene [Source:MarkerSymbol;Acc:MGI:3605641] BY ORTHOLOGY TO:ENSMUST00000066041
15.9966 -14.59 0.0000318053 400 5 5 8 [+] picture button
TEGT SINFRUT00000159167 Bax inhibitor 1 (BI-1) (Testis-enhanced gene transcript) (Transmembrane BAX inhibitor motif-containing protein 6). [Source:Uniprot/SWISSPROT;Acc:P55061]
17.6891 -21.83 0.0000319672 400 4 4 6 [+] picture button
KCNJ12 (1 of 2) SINFRUT00000141649 ATP-sensitive inward rectifier potassium channel 12 (Potassium channel, inwardly rectifying subfamily J member 12) (Inward rectifier K(+) channel Kir2.2) (Kir2.2v) (IRK2). [Source:Uniprot/SWISSPROT;Acc:Q14500]
16.8583 -18.65 0.0000320875 400 5 5 5 [+] picture button
PAG1 SINFRUT00000179334 Phosphoprotein associated with glycosphingolipid-enriched microdomains 1 (Transmembrane adapter protein PAG) (Csk-binding protein) (Transmembrane phosphoprotein Cbp). [Source:Uniprot/SWISSPROT;Acc:Q9NWQ8]
17.0545 -18.06 0.0000380672 400 7 1 7 [+] picture button
SEPT3 SINFRUT00000139221 Neuronal-specific septin-3. [Source:Uniprot/SWISSPROT;Acc:Q9UH03]
15.9966 -15.1 0.0000402943 400 7 2 13 [+] picture button
TCF7L2 SINFRUT00000157664 Transcription factor 7-like 2 (HMG box transcription factor 4) (T- cell-specific transcription factor 4) (TCF-4) (hTCF-4). [Source:Uniprot/SWISSPROT;Acc:Q9NQB0]
16.7164 -15.16 0.000041639 400 4 6 5 [+] picture button
SLC23A2 SINFRUT00000128512 Solute carrier family 23 member 2 (Sodium-dependent vitamin C transporter 2) (hSVCT2) (Na(+)/L-ascorbic acid transporter 2) (Yolk sac permease-like molecule 2) (Nucleobase transporter-like 1 protein). [Source:Uniprot/SWISSPROT;Acc:Q9UGH3]
15.9666 -16.64 0.0000451355 400 8 2 15 [+] picture button
LGI2 SINFRUT00000141080 Leucine-rich repeat LGI family member 2 precursor (Leucine-rich glioma-inactivated protein 2) (LGI1-like protein 2). [Source:Uniprot/SWISSPROT;Acc:Q8N0V4]
15.887 -23.23 0.0000457677 400 7 1 7 [+] picture button
GRIA1 (1 of 2) SINFRUT00000168907 Glutamate receptor 1 precursor (GluR-1) (GluR-A) (GluR-K1) (Glutamate receptor ionotropic, AMPA 1) (AMPA-selective glutamate receptor 1). [Source:Uniprot/SWISSPROT;Acc:P42261]
15.7115 -16.9 0.0000489472 400 7 7 10 [+] picture button
GOLGA7 SINFRUT00000139432 Golgin subfamily A member 7 (Golgi complex-associated protein of 16 kDa). [Source:Uniprot/SWISSPROT;Acc:Q7Z5G4]
19.4361 -26.43 0.0000489544 400 4 3 5 [+] picture button
SEPT2 SINFRUT00000168997 Septin-2 (Protein NEDD5). [Source:Uniprot/SWISSPROT;Acc:Q15019]
18.5577 -23.69 0.0000553592 400 3 3 6 [+] picture button
SCARA3 SINFRUT00000135812 Scavenger receptor class A member 3 (Cellular stress response gene protein). [Source:Uniprot/SWISSPROT;Acc:Q6AZY7]
18.6261 -22.34 0.0000642747 400 3 2 5 [+] picture button
MLL3 SINFRUT00000157851 Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog (EC 2.1.1.43) (Histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3) (Homologous to ALR protein). [Source:Uniprot/SWISSPROT;Acc:Q8NEZ4]
18.2974 -19.73 0.0000655505 400 5 4 7 [+] picture button
REV3L SINFRUT00000173686 DNA polymerase zeta catalytic subunit (EC 2.7.7.7) (hREV3). [Source:Uniprot/SWISSPROT;Acc:O60673]
15.9493 -18.73 0.000066756 400 5 4 8 [+] picture button
MGAT5B (1 of 2) SINFRUT00000135830 beta(1,6)-N-acetylglucosaminyltransferase V isoform 1 [Source:RefSeq_peptide;Acc:NP_653278]
16.4348 -14.87 0.0000738 400 4 4 6 [+] picture button
SINFRUT00000143797 Homolog of Oncorhynchus mykiss "Rab protein. [Source:Uniprot/SPTREMBL;Acc:Q9I8A5]"
17.64 -15.74 0.0000785564 400 5 3 7 [+] picture button
CFL2 SINFRUT00000139969 Cofilin-2 (Cofilin, muscle isoform). [Source:Uniprot/SWISSPROT;Acc:Q9Y281]
16.6217 -14.78 0.0000845198 400 6 2 7 [+] picture button
USP21 SINFRUT00000148263 Ubiquitin carboxyl-terminal hydrolase 21 (EC 3.1.2.15) (Ubiquitin thioesterase 21) (Ubiquitin-specific-processing protease 21) (Deubiquitinating enzyme 21) (NEDD8-specific protease). [Source:Uniprot/SWISSPROT;Acc:Q9UK80]
15.6679 -16.21 0.0000847259 400 3 2 4 [+] picture button
C8orf13 SINFRUT00000133873 Uncharacterized protein C8orf13. [Source:Uniprot/SWISSPROT;Acc:Q96KS9]
17.5305 -23.94 0.000088685 400 6 2 8 [+] picture button
MED9 SINFRUT00000170354 mediator of RNA polymerase II transcription, subunit 9 [Source:RefSeq_peptide;Acc:NP_060489]
16.5444 -18.19 0.0000967298 400 5 2 8 [+] picture button
MDM4 SINFRUT00000171861 Mdm4 protein (p53-binding protein Mdm4) (Mdm2-like p53-binding protein) (Mdmx protein) (Double minute 4 protein). [Source:Uniprot/SWISSPROT;Acc:O15151]
15.9493 -13.07 0.000105955 400 6 2 11 [+] picture button
SMEK2 SINFRUT00000129322 SMEK homolog 2. [Source:Uniprot/SWISSPROT;Acc:Q5MIZ7]
17.2643 -19.17 0.000111257 400 3 3 5 [+] picture button
GUCA1A SINFRUT00000136822 Guanylyl cyclase-activating protein 1 (GCAP 1) (Guanylate cyclase activator 1A). [Source:Uniprot/SWISSPROT;Acc:P43080]
16.654 -20.78 0.000118912 400 8 3 8 [+] picture button
SINFRUT00000162311 Homolog of Homo sapiens "G1/S-specific cyclin D2 [Source:IPI;Acc:IPI00025810]"
17.9459 -23.68 0.000119379 400 6 3 8 [+] picture button
AGPS SINFRUT00000131824 Alkyldihydroxyacetonephosphate synthase, peroxisomal precursor (EC 2.5.1.26) (Alkyl-DHAP synthase) (Alkylglycerone-phosphate synthase) (Aging-associated gene 5 protein). [Source:Uniprot/SWISSPROT;Acc:O00116]
16.3577 -14.85 0.000128674 400 6 3 12 [+] picture button
SFPQ SINFRUT00000129929 Splicing factor, proline- and glutamine-rich (Polypyrimidine tract- binding protein-associated-splicing factor) (PTB-associated-splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) (100 kDa DNA-pairing protein) (hPOMp100). [Source:Uniprot/SWISSPROT;Acc:P23246]
16.4348 -14.49 0.0001319 400 8 4 11 [+] picture button
PTGIR SINFRUT00000130879 Prostacyclin receptor (Prostanoid IP receptor) (PGI receptor) (Prostaglandin I2 receptor). [Source:Uniprot/SWISSPROT;Acc:P43119]
18.1879 -22.89 0.000135251 400 6 2 9 [+] picture button
COMMD4 SINFRUT00000129285 COMM domain-containing protein 4. [Source:Uniprot/SWISSPROT;Acc:Q9H0A8]
19.4361 -23.22 0.000138849 400 6 2 10 [+] picture button

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Download table: GFF TXT
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