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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Takifugu rubripes and fru-miR-101b

820 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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USP47 SINFRUT00000145152 Ubiquitin carboxyl-terminal hydrolase 47 (EC 3.1.2.15) (Ubiquitin thioesterase 47) (Ubiquitin-specific-processing protease 47) (Deubiquitinating enzyme 47). [Source:Uniprot/SWISSPROT;Acc:Q96K76]
17.5062 -17.42 0.00000000273398 400 7 10 14 [+] picture button
SMOX SINFRUT00000165956 Spermine oxidase (EC 1.5.3.-) (Polyamine oxidase 1) (PAO-1) (PAOh1). [Source:Uniprot/SWISSPROT;Acc:Q9NWM0]
17.7264 -13.01 0.00000000322473 400 8 5 10 [+] picture button
VPS41 SINFRUT00000165924 Vacuolar protein sorting-associated protein 41 homolog (S53). [Source:Uniprot/SWISSPROT;Acc:P49754]
17.3961 -16.01 0.000000151948 400 4 2 7 [+] picture button
WWC3 SINFRUT00000172087 WWC family member 3. [Source:Uniprot/SWISSPROT;Acc:Q9ULE0]
17.3961 -13.16 0.000000227895 400 3 10 5 [+] picture button
PDSS1 SINFRUT00000129582 Decaprenyl-diphosphate synthase subunit 1 (EC 2.5.1.-) (Decaprenyl pyrophosphate synthetase subunit 1) (Trans-prenyltransferase) (TPT). [Source:Uniprot/SWISSPROT;Acc:Q5T2R2]
16.9319 -11.24 0.000000332469 400 4 3 4 [+] picture button
SH3RF1 SINFRUT00000169570 SH3 domain containing ring finger 1 [Source:RefSeq_peptide;Acc:NP_065921]
16.1289 -9.91 0.00000187173 400 5 9 6 [+] picture button
NR1D2 (1 of 2) SINFRUT00000128120 Orphan nuclear receptor NR1D2 (Rev-erb-beta) (EAR-1R) (Orphan nuclear hormone receptor BD73). [Source:Uniprot/SWISSPROT;Acc:Q14995]
17.0658 -14.1 0.00000202976 400 3 1 7 [+] picture button
LIN7C SINFRUT00000151385 Lin-7 homolog C (Lin-7C) (Mammalian lin-seven protein 3) (MALS-3) (Vertebrate lin-7 homolog 3) (Veli-3 protein). [Source:Uniprot/SWISSPROT;Acc:Q9NUP9]
17.8762 -15.56 0.00000326263 400 8 5 13 [+] picture button
STAU2 SINFRUT00000159856 Double-stranded RNA-binding protein Staufen homolog 2. [Source:Uniprot/SWISSPROT;Acc:Q9NUL3]
17.5062 -18.69 0.000003517 400 6 7 6 [+] picture button
ANKRA2 SINFRUT00000155294 Ankyrin repeat family A protein 2 (RFXANK-like 2). [Source:Uniprot/SWISSPROT;Acc:Q9H9E1]
16.3314 -14.91 0.00000438501 400 8 2 10 [+] picture button
ZNF217 SINFRUT00000134261 Zinc finger protein 217. [Source:Uniprot/SWISSPROT;Acc:O75362]
16.9071 -18.38 0.00000516343 400 3 1 3 [+] picture button
DDX55 SINFRUT00000136408 ATP-dependent RNA helicase DDX55 (EC 3.6.1.-) (DEAD box protein 55). [Source:Uniprot/SWISSPROT;Acc:Q8NHQ9]
17.943 -22.9 0.00000729064 400 6 2 11 [+] picture button
SLC40A1 SINFRUT00000129888 Solute carrier family 40 member 1 (Ferroportin-1) (Iron-regulated transporter 1). [Source:Uniprot/SWISSPROT;Acc:Q9NP59]
16.2951 -13.23 0.00000906795 400 5 6 6 [+] picture button
KCNJ6 SINFRUT00000131474 G protein-activated inward rectifier potassium channel 2 (GIRK2) (Potassium channel, inwardly rectifying subfamily J member 6) (Inward rectifier K(+) channel Kir3.2) (KATP-2) (BIR1). [Source:Uniprot/SWISSPROT;Acc:P48051]
17.3961 -19.26 0.00000978231 400 9 4 8 [+] picture button
C10orf118 SINFRUT00000128217 Uncharacterized protein C10orf118 (CTCL tumor antigen HD-CL-01/L14-2). [Source:Uniprot/SWISSPROT;Acc:Q7Z3E2]
16.2256 -13.72 0.000011475 400 4 2 5 [+] picture button
UCK2 SINFRUT00000135528 Uridine-cytidine kinase 2 (EC 2.7.1.48) (UCK 2) (Uridine monophosphokinase 2) (Cytidine monophosphokinase 2). [Source:Uniprot/SWISSPROT;Acc:Q9BZX2]
16.6251 -14.88 0.0000131604 400 4 5 5 [+] picture button
FASTKD3 SINFRUT00000142473 FAST kinase domain-containing protein 3. [Source:Uniprot/SWISSPROT;Acc:Q14CZ7]
16.7355 -15.75 0.0000133508 400 8 2 11 [+] picture button
Q6WNS8_FUGRU SINFRUT00000130972 Transcription factor Sox9b. [Source:Uniprot/SPTREMBL;Acc:Q6WNS8]
17.7449 -17.89 0.0000136105 400 9 7 11 [+] picture button
KPNA2 SINFRUT00000152877 Importin alpha-2 subunit (Karyopherin alpha-2 subunit) (SRP1-alpha) (RAG cohort protein 1). [Source:Uniprot/SWISSPROT;Acc:P52292]
16.9744 -13.78 0.0000143407 400 7 7 13 [+] picture button
TNFAIP8L3 SINFRUT00000165316 tumor necrosis factor, alpha-induced protein 8-like 3 [Source:RefSeq_peptide;Acc:NP_997264]
16.0339 -12.72 0.0000153077 400 7 2 11 [+] picture button
GJA1 SINFRUT00000138127 Gap junction alpha-1 protein (Connexin-43) (Cx43) (Gap junction 43 kDa heart protein). [Source:Uniprot/SWISSPROT;Acc:P17302]
18.4332 -16.32 0.0000166271 400 2 1 3 [+] picture button
PSPC1 SINFRUT00000139841 paraspeckle protein 1 [Source:RefSeq_peptide;Acc:NP_001035879]
17.3961 -11.88 0.0000170972 400 5 2 11 [+] picture button
GDE1_HUMAN (1 of 2) SINFRUT00000158337 Glycerophosphodiester phosphodiesterase 1 (EC 3.1.4.44) (Membrane interacting protein of RGS16) (RGS16-interacting membrane protein). [Source:Uniprot/SWISSPROT;Acc:Q9NZC3]
16.6784 -12.93 0.00001904 400 7 1 8 [+] picture button
CRLS1 SINFRUT00000178628 Cardiolipin synthetase (EC 2.7.8.-) (Cardiolipin synthase) (CLS) (Protein GCD10 homolog). [Source:Uniprot/SWISSPROT;Acc:Q9UJA2]
16.3953 -13.14 0.0000193041 400 5 2 7 [+] picture button
ENTPD6 SINFRUT00000158159 Ectonucleoside triphosphate diphosphohydrolase 6 (EC 3.6.1.6) (NTPDase 6) (CD39 antigen-like 2). [Source:Uniprot/SWISSPROT;Acc:O75354]
16.2951 -13.13 0.0000216564 400 5 3 14 [+] picture button
DDX3X (2 of 2) SINFRUT00000147624 ATP-dependent RNA helicase DDX3Y (EC 3.6.1.-) (DEAD box protein 3, Y- chromosomal). [Source:Uniprot/SWISSPROT;Acc:O15523]
16.5153 -14.59 0.0000249599 400 4 2 5 [+] picture button
IDH1 SINFRUT00000128662 Isocitrate dehydrogenase [NADP] cytoplasmic (EC 1.1.1.42) (Cytosolic NADP-isocitrate dehydrogenase) (Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific ICDH) (IDP). [Source:Uniprot/SWISSPROT;Acc:O75874]
15.7446 -8.3 0.0000263978 400 7 2 14 [+] picture button
AP3S1 SINFRUT00000127147 AP-3 complex subunit sigma-1 (Adapter-related protein complex 3 sigma- 1 subunit) (Sigma-adaptin 3a) (AP-3 complex sigma-3A subunit) (Sigma- 3A-adaptin) (Clathrin-associated/assembly/adapter protein, small 3). [Source:Uniprot/SWISSPROT;Acc:Q92572]
16.4464 -12.76 0.0000288232 400 10 9 15 [+] picture button
ARSA SINFRUT00000144940 Arylsulfatase A precursor (EC 3.1.6.8) (ASA) (Cerebroside-sulfatase) [Contains: Arylsulfatase A component B; Arylsulfatase A component C]. [Source:Uniprot/SWISSPROT;Acc:P15289]
16.3498 -14.97 0.0000365246 400 9 2 14 [+] picture button
PRKCD (1 of 2) SINFRUT00000169542 Protein kinase C delta type (EC 2.7.11.13) (nPKC-delta). [Source:Uniprot/SWISSPROT;Acc:Q05655]
16.6624 -13.21 0.0000411946 400 8 2 10 [+] picture button
GRIK4 SINFRUT00000168470 Glutamate receptor, ionotropic kainate 4 precursor (Glutamate receptor KA-1) (KA1) (Excitatory amino acid receptor 1) (EAA1). [Source:Uniprot/SWISSPROT;Acc:Q16099]
17.7759 -17.77 0.0000452617 400 8 4 18 [+] picture button
KCTD6 SINFRUT00000133721 BTB/POZ domain-containing protein KCTD6. [Source:Uniprot/SWISSPROT;Acc:Q8NC69]
16.7355 -16.15 0.0000456 400 3 1 5 [+] picture button
CCT2 SINFRUT00000149840 T-complex protein 1 subunit beta (TCP-1-beta) (CCT-beta). [Source:Uniprot/SWISSPROT;Acc:P78371]
16.4052 -15.78 0.0000467184 400 5 3 7 [+] picture button
LOC387787 SINFRUT00000128498 Homolog of Homo sapiens "PREDICTED "similar to RIKEN cDNA 2610209A20 [Source:IPI;Acc:IPI00398926]"
17.8365 -12.01 0.0000502018 400 5 2 6 [+] picture button
TRIM3 (1 of 2) SINFRUT00000148791 Tripartite motif-containing protein 3 (RING finger protein 22) (Brain- expressed RING finger protein) (RING finger protein 97). [Source:Uniprot/SWISSPROT;Acc:O75382]
17.3961 -17.67 0.0000533997 400 7 3 11 [+] picture button
SINFRUT00000146148 Homolog of Brachydanio rerio "Similar to phosphorylase kinase, gamma 2 (Testis). [Source:Uniprot/SPTREMBL;Acc:Q7ZYW8]"
15.9648 -14.71 0.0000591897 400 6 3 12 [+] picture button
RHPN2 SINFRUT00000152087 Rhophilin-2 (GTP-Rho-binding protein 2) (76 kDa RhoB effector protein) (p76RBE). [Source:Uniprot/SWISSPROT;Acc:Q8IUC4]
17.8365 -16.29 0.0000618439 400 9 4 14 [+] picture button
GPR137B (1 of 2) SINFRUT00000129908 Integral membrane protein GPR137B (Transmembrane 7 superfamily member 1). [Source:Uniprot/SWISSPROT;Acc:O60478]
17.8863 -15.32 0.0000631672 400 3 3 8 [+] picture button
MINK1 SINFRUT00000141934 Misshapen-like kinase 1 (EC 2.7.11.1) (Mitogen-activated protein kinase kinase kinase kinase 6) (MAPK/ERK kinase kinase kinase 6) (MEK kinase kinase 6) (MEKKK 6) (Misshapen/NIK-related kinase) (GCK family kinase MiNK). [Source:Uniprot/SWISSPROT;Acc:Q8N4C8]
17.6163 -15.57 0.0000633332 400 4 3 6 [+] picture button
USP33 SINFRUT00000157999 Ubiquitin carboxyl-terminal hydrolase 33 (EC 3.1.2.15) (Ubiquitin thioesterase 33) (Ubiquitin-specific-processing protease 33) (Deubiquitinating enzyme 33) (VHL-interacting deubiquitinating enzyme 1). [Source:Uniprot/SWISSPROT;Acc:Q8TEY7]
16.185 -14.39 0.0000675779 400 4 5 6 [+] picture button
KIF14 SINFRUT00000166565 Kinesin-like protein KIF14. [Source:Uniprot/SWISSPROT;Acc:Q15058]
16.185 -9.26 0.000070111 400 8 3 10 [+] picture button
TUSC3 SINFRUT00000147971 Tumor suppressor candidate 3 (Protein N33). [Source:Uniprot/SWISSPROT;Acc:Q13454]
17.0658 -14.82 0.0000724952 400 7 4 10 [+] picture button
PRKCQ SINFRUT00000140695 Protein kinase C theta type (EC 2.7.11.13) (nPKC-theta). [Source:Uniprot/SWISSPROT;Acc:Q04759]
17.7264 -15.76 0.0000728263 400 5 2 8 [+] picture button
TMEM43 SINFRUT00000131315 Transmembrane protein 43. [Source:Uniprot/SWISSPROT;Acc:Q9BTV4]
16.0749 -14.71 0.0000730108 400 3 3 6 [+] picture button
BAG1 SINFRUT00000134848 BAG family molecular chaperone regulator 1 (BCL-2-binding athanogene- 1) (BAG-1) (Glucocorticoid receptor-associated protein RAP46). [Source:Uniprot/SWISSPROT;Acc:Q99933]
17.5601 -14.54 0.0000804609 400 2 2 4 [+] picture button
PCGF5 SINFRUT00000180988 Polycomb group RING finger protein 5 (RING finger protein 159). [Source:Uniprot/SWISSPROT;Acc:Q86SE9]
16.1107 -18.21 0.000081366 400 4 1 6 [+] picture button
ING4 SINFRUT00000156111 Inhibitor of growth protein 4 (p29ING4). [Source:Uniprot/SWISSPROT;Acc:Q9UNL4]
16.2585 -15.52 0.000086519 400 7 3 7 [+] picture button
PEX1 SINFRUT00000160195 Peroxisome biogenesis factor 1 (Peroxin-1) (Peroxisome biogenesis disorder protein 1). [Source:Uniprot/SWISSPROT;Acc:O43933]
15.7446 -18.8 0.0000883559 400 6 1 8 [+] picture button
SINFRUT00000182549 Homolog of Cyprinus carpio "ZP2. [Source:Uniprot/SPTREMBL;Acc:Q90356]"
16.487 -12.35 0.0000979927 400 4 1 3 [+] picture button
Q7ZTB2_FUGRU SINFRUT00000133424 Synapsin 2B. [Source:Uniprot/SPTREMBL;Acc:Q7ZTB2]
16.0201 -17.65 0.0000980301 400 5 6 16 [+] picture button

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Download table: GFF TXT
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