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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Takifugu rubripes and fru-miR-1

615 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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PPIB SINFRUT00000138892 Peptidyl-prolyl cis-trans isomerase B precursor (EC 5.2.1.8) (PPIase) (Rotamase) (Cyclophilin B) (S-cyclophilin) (SCYLP) (CYP-S1). [Source:Uniprot/SWISSPROT;Acc:P23284]
16.9557 -13.94 0.00000000709888 400 4 1 5 [+] picture button
NUDCD1 (1 of 2) SINFRUT00000153992 NudC domain containing 1 [Source:RefSeq_peptide;Acc:NP_116258]
18.761 -14.66 0.0000000448157 400 4 1 6 [+] picture button
SFRS9 SINFRUT00000145791 Splicing factor, arginine/serine-rich 9 (Pre-mRNA-splicing factor SRp30C). [Source:Uniprot/SWISSPROT;Acc:Q13242]
18.263 -15.33 0.0000000731575 400 6 3 7 [+] picture button
GTF2B SINFRUT00000135590 Transcription initiation factor IIB (General transcription factor TFIIB) (S300-II). [Source:Uniprot/SWISSPROT;Acc:Q00403]
16.7966 -12.85 0.00000013063 400 4 8 8 [+] picture button
NEDD9 SINFRUT00000152401 Enhancer of filamentation 1 (HEF1) (CRK-associated substrate-related protein) (CAS-L) (CasL) (p105) (Protein NEDD9) (Renal carcinoma antigen NY-REN-12). [Source:Uniprot/SWISSPROT;Acc:Q14511]
17.0658 -10.78 0.000000146323 400 3 3 7 [+] picture button
WDR48 SINFRUT00000137883 WD repeat protein 48 (WD repeat endosomal protein) (p80). [Source:Uniprot/SWISSPROT;Acc:Q8TAF3]
18.0591 -16.1 0.00000016152 400 6 4 9 [+] picture button
Q90XY2_FUGRU SINFRUT00000154154 3'-phosphoadenosine 5'-phosphosulfate synthase 2. [Source:Uniprot/SPTREMBL;Acc:Q90XY2]
18.9375 -17.46 0.000000229445 400 6 3 9 [+] picture button
LMBR1 SINFRUT00000167289 Limb region 1 protein homolog (Differentiation-related gene 14 protein). [Source:Uniprot/SWISSPROT;Acc:Q8WVP7]
18.5378 -15.89 0.000000428826 400 9 4 12 [+] picture button
MOCOS SINFRUT00000176114 Molybdenum cofactor sulfurase (EC 4.4.-.-) (MoCo sulfurase) (MOS) (HMCS). [Source:Uniprot/SWISSPROT;Acc:Q96EN8]
16.6254 -9.14 0.000000582918 400 3 2 5 [+] picture button
SNX14 (2 of 2) SINFRUT00000174548 Sorting nexin-14. [Source:Uniprot/SWISSPROT;Acc:Q9Y5W7]
17.0569 -16.08 0.000000603964 400 4 3 10 [+] picture button
DDX5 (2 of 2) SINFRUT00000165391 Probable ATP-dependent RNA helicase DDX5 (EC 3.6.1.-) (DEAD box protein 5) (RNA helicase p68). [Source:Uniprot/SWISSPROT;Acc:P17844]
17.1478 -13.64 0.000000971838 400 6 12 12 [+] picture button
ACAT2 SINFRUT00000180981 Acetyl-CoA acetyltransferase, cytosolic (EC 2.3.1.9) (Cytosolic acetoacetyl-CoA thiolase) (Acetyl CoA transferase-like protein). [Source:Uniprot/SWISSPROT;Acc:Q9BWD1]
18.6072 -17.41 0.00000134754 400 5 2 10 [+] picture button
DDX5 (1 of 2) SINFRUT00000152873 Probable ATP-dependent RNA helicase DDX5 (EC 3.6.1.-) (DEAD box protein 5) (RNA helicase p68). [Source:Uniprot/SWISSPROT;Acc:P17844]
19.4189 -20.24 0.00000284863 400 6 3 9 [+] picture button
KLHL11 SINFRUT00000141235 Kelch-like protein 11 precursor. [Source:Uniprot/SWISSPROT;Acc:Q9NVR0]
17.9466 -14.35 0.00000397616 400 8 3 15 [+] picture button
Q90WM4_FUGRU SINFRUT00000136924 DMRT2a protein. [Source:Uniprot/SPTREMBL;Acc:Q4AE31]
16.4052 -13.82 0.00000397763 400 6 3 10 [+] picture button
Q6ZMK7_HUMAN SINFRUT00000176443 Homolog of Homo sapiens "Splice Isoform 1 of Centaurin gamma 2 [Source:IPI;Acc:IPI00456242]"
16.5946 -10.01 0.0000042845 400 6 2 8 [+] picture button
NECAP2 SINFRUT00000179043 Adaptin ear-binding coat-associated protein 2 (NECAP-2). [Source:Uniprot/SWISSPROT;Acc:Q9NVZ3]
17.7424 -18.53 0.00000664089 400 5 3 11 [+] picture button
PGRMC1 SINFRUT00000143799 Membrane-associated progesterone receptor component 1 (mPR). [Source:Uniprot/SWISSPROT;Acc:O00264]
18.3176 -16.57 0.00000701037 400 6 4 13 [+] picture button
ASTE1 SINFRUT00000161054 asteroid homolog 1 [Source:RefSeq_peptide;Acc:NP_054784]
16.4052 -12.77 0.00000731668 400 5 1 6 [+] picture button
TMF1 SINFRUT00000127930 TATA element modulatory factor (TMF). [Source:Uniprot/SWISSPROT;Acc:P82094]
16.8456 -13.53 0.00000810979 400 7 2 9 [+] picture button
TLR3 SINFRUT00000138215 Toll-like receptor 3 precursor (CD283 antigen). [Source:Uniprot/SWISSPROT;Acc:O15455]
17.286 -12.53 0.0000101694 400 3 3 5 [+] picture button
SNX8 SINFRUT00000138143 Sorting nexin-8. [Source:Uniprot/SWISSPROT;Acc:Q9Y5X2]
18.4971 -15.78 0.0000113129 400 3 2 4 [+] picture button
SHPRH SINFRUT00000143713 SNF2 histone linker PHD RING helicase isoform a [Source:RefSeq_peptide;Acc:NP_001036148]
16.5153 -13.15 0.0000123154 400 3 2 6 [+] picture button
THOC7 SINFRUT00000130105 Ngg1 interacting factor 3 like 1 binding protein 1 [Source:RefSeq_peptide;Acc:NP_079351]
16.5898 -12.78 0.0000159332 400 6 1 8 [+] picture button
PIGA SINFRUT00000156519 Phosphatidylinositol N-acetylglucosaminyltransferase subunit A (EC 2.4.1.198) (GlcNAc-PI synthesis protein) (Phosphatidylinositol- glycan biosynthesis class A protein) (PIG-A). [Source:Uniprot/SWISSPROT;Acc:P37287]
18.6028 -15.35 0.0000185213 400 8 3 15 [+] picture button
C9orf19 SINFRUT00000136612 Golgi-associated plant pathogenesis-related protein 1 (Golgi- associated PR-1 protein) (GAPR-1) (Glioma pathogenesis-related protein 2) (GliPR 2). [Source:Uniprot/SWISSPROT;Acc:Q9H4G4]
17.9917 -14.59 0.0000185263 400 9 2 14 [+] picture button
WDR1 SINFRUT00000150266 WD repeat protein 1 (Actin-interacting protein 1) (AIP1) (NORI-1). [Source:Uniprot/SWISSPROT;Acc:O75083]
16.7966 -12.35 0.0000186095 400 6 2 11 [+] picture button
CEBPZ SINFRUT00000131304 CCAAT/enhancer-binding protein zeta (CCAAT-box-binding transcription factor) (CCAAT-binding factor) (CBF). [Source:Uniprot/SWISSPROT;Acc:Q03701]
16.8281 -11.98 0.0000225532 400 1 1 3 [+] picture button
SINFRUT00000136502 Homolog of Brachydanio rerio "Vesicle-associated membrane protein 8 (Endobrevin). [Source:Uniprot/SPTREMBL;Acc:Q7ZUC1]"
18.6072 -19.01 0.0000229821 400 5 1 4 [+] picture button
PDIK1L SINFRUT00000128103 Serine/threonine-protein kinase PDIK1L (EC 2.7.11.1) (PDLIM1- interacting kinase 1-like). [Source:Uniprot/SWISSPROT;Acc:Q8N165]
16.5153 -13.12 0.0000231441 400 2 2 5 [+] picture button
C12orf4 SINFRUT00000147755 Uncharacterized protein C12orf4. [Source:Uniprot/SWISSPROT;Acc:Q9NQ89]
16.5329 -11.75 0.0000255072 400 3 1 5 [+] picture button
GDAP1L1 SINFRUT00000132481 Ganglioside-induced differentiation-associated protein 1-like 1 (GDAP1-L1). [Source:Uniprot/SWISSPROT;Acc:Q96MZ0]
16.9557 -12.44 0.0000266958 400 4 4 5 [+] picture button
WDR8 SINFRUT00000146022 WD repeat protein 8. [Source:Uniprot/SWISSPROT;Acc:Q9P2S5]
16.9557 -14.04 0.0000339122 400 4 3 8 [+] picture button
GART SINFRUT00000132027 Trifunctional purine biosynthetic protein adenosine-3 [Includes: Phosphoribosylamine--glycine ligase (EC 6.3.4.13) (GARS) (Glycinamide ribonucleotide synthetase) (Phosphoribosylglycinamide synthetase); Phosphoribosylformylglycinamidine cyclo-ligase (EC 6. [Source:Uniprot/SWISSPROT;Acc:P22102]
18.6072 -22.1 0.0000341221 400 11 2 14 [+] picture button
EIF4E3 SINFRUT00000150455 eukaryotic translation initiation factor 4E member 3 [Source:RefSeq_peptide;Acc:NP_775495]
16.8456 -11.72 0.0000357075 400 7 2 10 [+] picture button
DAK SINFRUT00000153974 Dihydroxyacetone kinase (EC 2.7.1.29) (Glycerone kinase) (DHA kinase). [Source:Uniprot/SWISSPROT;Acc:Q3LXA3]
18.6072 -18.16 0.0000366071 400 5 1 6 [+] picture button
WDR35 SINFRUT00000152702 WD repeat protein 35. [Source:Uniprot/SWISSPROT;Acc:Q9P2L0]
16.6254 -16.84 0.0000423818 400 2 3 3 [+] picture button
C14orf179 SINFRUT00000152667 Uncharacterized protein C14orf179. [Source:Uniprot/SWISSPROT;Acc:Q96FT9]
17.1759 -9.28 0.0000434349 400 5 4 7 [+] picture button
MED11 SINFRUT00000144470 mediator of RNA polymerase II transcription, subunit 11 homolog [Source:RefSeq_peptide;Acc:NP_001001683]
16.6254 -11.81 0.0000559959 400 2 1 3 [+] picture button
C2orf40 SINFRUT00000181490 Esophageal cancer related gene 4 protein precursor. [Source:Uniprot/SWISSPROT;Acc:Q9H1Z8]
17.9466 -15.15 0.0000616151 400 6 1 9 [+] picture button
GPR1 SINFRUT00000131794 Probable G-protein coupled receptor 1. [Source:Uniprot/SWISSPROT;Acc:P46091]
16.9557 -11.29 0.0000632106 400 3 3 4 [+] picture button
OSMR SINFRUT00000127142 Oncostatin-M specific receptor subunit beta precursor. [Source:Uniprot/SWISSPROT;Acc:Q99650]
17.286 -10.85 0.0000658185 400 7 3 8 [+] picture button
PINX1_HUMAN SINFRUT00000133862 Pin2-interacting protein X1 (TRF1-interacting protein 1) (Liver- related putative tumor suppressor) (Protein 67-11-3). [Source:Uniprot/SWISSPROT;Acc:Q96BK5]
16.5153 -11.17 0.0000674431 400 6 2 11 [+] picture button
CORO1C (2 of 2) SINFRUT00000177352 Coronin-1C (Coronin-3) (hCRNN4). [Source:Uniprot/SWISSPROT;Acc:Q9ULV4]
18.7129 -19.19 0.0000683054 400 8 3 12 [+] picture button
ORMDL2 SINFRUT00000129699 ORM1-like protein 2 (Adoplin-2). [Source:Uniprot/SWISSPROT;Acc:Q53FV1]
17.5062 -11.67 0.0000695044 400 7 3 19 [+] picture button
SINFRUT00000150955 Homolog of Oryzias latipes "Protein tyrosine phosphatase a. [Source:Uniprot/SPTREMBL;Acc:Q76K58]"
16.4165 -9.64 0.0000830839 400 4 6 4 [+] picture button
ZCRB1 SINFRUT00000162100 Zinc finger CCHC-type and RNA-binding motif-containing protein 1 (U11/U12 snRNP 31 kDa protein) (U11/U12-31K). [Source:Uniprot/SWISSPROT;Acc:Q8TBF4]
16.4052 -12.3 0.0000884131 400 6 1 8 [+] picture button
Q9BZU6_HUMAN SINFRUT00000160189 PNAS-13. [Source:Uniprot/SPTREMBL;Acc:Q9BZU6]
16.6188 -10.65 0.0000911411 400 8 2 14 [+] picture button
NP_001027904.1 SINFRUT00000163660 gp91phox protein [Source:RefSeq_peptide;Acc:NP_001027904]
16.4265 -14.48 0.0000984192 400 9 1 9 [+] picture button
UBE1DC1 SINFRUT00000147648 Ubiquitin-activating enzyme E1 domain-containing protein 1 (UFM1- activating enzyme) (Ubiquitin-activating enzyme 5) (ThiFP1). [Source:Uniprot/SWISSPROT;Acc:Q9GZZ9]
17.1759 -17.81 0.000101556 400 6 2 6 [+] picture button

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Download table: GFF TXT
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