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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Takifugu rubripes and dre-miR-34c

786 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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AXL SINFRUT00000182900 Tyrosine-protein kinase receptor UFO precursor (EC 2.7.10.1) (AXL oncogene). [Source:Uniprot/SWISSPROT;Acc:P30530]
16.9489 -16.77 0.000000000371935 400 6 3 9 [+] picture button
SVOP SINFRUT00000176065 Synaptic vesicle 2-related protein (SV2-related protein). [Source:Uniprot/SWISSPROT;Acc:Q8N4V2]
16.2157 -14.34 0.0000000145397 400 4 2 4 [+] picture button
TMEM22 SINFRUT00000150697 Transmembrane protein 22. [Source:Uniprot/SWISSPROT;Acc:Q8TBE7]
16.4758 -16.68 0.000000048622 400 8 3 12 [+] picture button
PTPLAD1 SINFRUT00000137211 butyrate-induced transcript 1 [Source:RefSeq_peptide;Acc:NP_057479]
16.6283 -15.8 0.0000000608012 400 5 2 9 [+] picture button
TAF4B SINFRUT00000178319 Transcription initiation factor TFIID subunit 4B (Transcription initiation factor TFIID 105 kDa subunit) (TAFII-105) (TAFII105). [Source:Uniprot/SWISSPROT;Acc:Q92750]
17.4222 -23.78 0.0000000812978 400 4 2 7 [+] picture button
SLC30A3 (1 of 2) SINFRUT00000150356 Zinc transporter 3 (ZnT-3) (Solute carrier family 30 member 3). [Source:Uniprot/SWISSPROT;Acc:Q99726]
16.5811 -16.73 0.000000130728 400 7 4 10 [+] picture button
SENP6 SINFRUT00000161483 Sentrin-specific protease 6 (EC 3.4.22.-) (Sentrin/SUMO-specific protease SENP6) (SUMO-1-specific protease 1). [Source:Uniprot/SWISSPROT;Acc:Q9GZR1]
16.3253 -15.22 0.000000290653 400 5 2 7 [+] picture button
FOXP2 SINFRUT00000136678 Forkhead box protein P2 (CAG repeat protein 44) (Trinucleotide repeat- containing gene 10 protein). [Source:Uniprot/SWISSPROT;Acc:O15409]
16.6919 -17.85 0.000000318198 400 5 9 6 [+] picture button
FKBP1B SINFRUT00000139297 FK506-binding protein 1B (EC 5.2.1.8) (Peptidyl-prolyl cis-trans isomerase 1B) (PPIase 1B) (Rotamase 1B) (12.6 kDa FKBP) (FKBP-12.6) (Immunophilin FKBP12.6) (h-FKBP-12). [Source:Uniprot/SWISSPROT;Acc:P68106]
16.2157 -9.47 0.000000323471 400 8 7 12 [+] picture button
RALGPS2 SINFRUT00000178522 Ral GEF with PH domain and SH3 binding motif 2 isoform 2 [Source:RefSeq_peptide;Acc:NP_689876]
17.3397 -16.74 0.000000330401 400 6 8 10 [+] picture button
RB1 SINFRUT00000172384 Retinoblastoma-associated protein (PP110) (P105-RB) (RB). [Source:Uniprot/SWISSPROT;Acc:P06400]
16.3253 -21.72 0.000000357498 400 3 2 5 [+] picture button
SLC10A7 SINFRUT00000157585 Sodium/bile acid cotransporter 7 (Na(+)/bile acid cotransporter 7) (Solute carrier family 10 member 7). [Source:Uniprot/SWISSPROT;Acc:Q0GE19]
16.4348 -20 0.0000007012 400 3 1 5 [+] picture button
JMJD2C SINFRUT00000151439 JmjC domain-containing histone demethylation protein 3C (EC 1.14.11.-) (Jumonji domain-containing protein 2C) (Gene amplified in squamous cell carcinoma 1 protein) (GASC-1 protein). [Source:Uniprot/SWISSPROT;Acc:Q9H3R0]
17.64 -26.16 0.000001 400 12 1 2 [+] picture button
SINFRUT00000182284 Homolog of Homo sapiens "Pogo transposable element with ZNF domain [Source:IPI;Acc:IPI00514770]"
17.8592 -26.09 0.000001 400 5 1 4 [+] picture button
ITPR3 SINFRUT00000183330 Inositol 1,4,5-trisphosphate receptor type 3 (Type 3 inositol 1,4,5- trisphosphate receptor) (Type 3 InsP3 receptor) (IP3 receptor isoform 3) (InsP3R3). [Source:Uniprot/SWISSPROT;Acc:Q14573]
16.6476 -23.94 0.00000114836 400 5 5 8 [+] picture button
DAAM1 SINFRUT00000149941 Disheveled-associated activator of morphogenesis 1. [Source:Uniprot/SWISSPROT;Acc:Q9Y4D1]
16.7097 -14.53 0.00000140376 400 3 3 4 [+] picture button
NTRK3 SINFRUT00000128161 NT-3 growth factor receptor precursor (EC 2.7.10.1) (Neurotrophic tyrosine kinase receptor type 3) (TrkC tyrosine kinase) (GP145-TrkC) (Trk-C). [Source:Uniprot/SWISSPROT;Acc:Q16288]
17.471 -18.09 0.00000152664 400 7 5 12 [+] picture button
SLC16A3 (1 of 2) SINFRUT00000129089 Monocarboxylate transporter 4 (MCT 4) (MCT 3) (Solute carrier family 16 member 3). [Source:Uniprot/SWISSPROT;Acc:O15427]
16.8007 -18.92 0.00000343125 400 5 1 8 [+] picture button
RPS6KA4 SINFRUT00000182175 Ribosomal protein S6 kinase alpha-4 (EC 2.7.11.1) (Nuclear mitogen- and stress-activated protein kinase 2) (90 kDa ribosomal protein S6 kinase 4) (Ribosomal protein kinase B) (RSKB). [Source:Uniprot/SWISSPROT;Acc:O75676]
16.2793 -17.34 0.00000372419 400 7 6 10 [+] picture button
C1orf89 SINFRUT00000147268 Miro domain-containing protein C1orf89. [Source:Uniprot/SWISSPROT;Acc:Q9BU20]
16.4348 -13.07 0.00000400666 400 4 2 7 [+] picture button
MYCN SINFRUT00000166557 N-myc proto-oncogene protein. [Source:Uniprot/SWISSPROT;Acc:P04198]
16.3144 -15.28 0.00000568399 400 6 10 10 [+] picture button
ELMOD1 SINFRUT00000150373 ELMO domain-containing protein 1. [Source:Uniprot/SWISSPROT;Acc:Q8N336]
18.0132 -16.95 0.0000058288 400 3 1 4 [+] picture button
CEP152 SINFRUT00000137577 Centrosomal protein of 152 kDa (Cep152 protein). [Source:Uniprot/SWISSPROT;Acc:O94986]
16.3253 -17.89 0.00000675763 400 6 3 6 [+] picture button
VPS11 SINFRUT00000149663 Vacuolar protein sorting-associated protein 11 homolog (hVPS11) (RING finger protein 108). [Source:Uniprot/SWISSPROT;Acc:Q9H270]
16.7635 -14.17 0.00000743321 400 5 2 6 [+] picture button
PGAP1_HUMAN SINFRUT00000145416 GPI inositol-deacylase (EC 3.1.-.-) (hPGAP1). [Source:Uniprot/SWISSPROT;Acc:Q75T13]
16.7635 -15.91 0.000007555 400 6 4 11 [+] picture button
SPI1 (1 of 2) SINFRUT00000168194 Transcription factor PU.1 (31 kDa transforming protein). [Source:Uniprot/SWISSPROT;Acc:P17947]
17.64 -18.2 0.00000771963 400 5 3 6 [+] picture button
SEPT3 SINFRUT00000139221 Neuronal-specific septin-3. [Source:Uniprot/SWISSPROT;Acc:Q9UH03]
16.654 -18.94 0.00000807881 400 7 2 13 [+] picture button
NP_001017964.1 SINFRUT00000182404 LOC150223 protein (LOC150223), mRNA [Source:RefSeq_dna;Acc:NM_001017964]
16.8007 -15.16 0.00000845635 400 6 1 6 [+] picture button
CD9 (1 of 2) SINFRUT00000149995 CD9 antigen (p24) (Leukocyte antigen MIC3) (Motility-related protein) (MRP-1) (Tetraspanin-29) (Tspan-29). [Source:Uniprot/SWISSPROT;Acc:P21926]
17.3114 -20.36 0.00000938602 400 7 4 8 [+] picture button
NOTCH1 (2 of 2) SINFRUT00000134418 Neurogenic locus notch homolog protein 1 precursor (Notch 1) (hN1) (Translocation-associated notch protein TAN-1) [Contains: Notch 1 extracellular truncation; Notch 1 intracellular domain]. [Source:Uniprot/SWISSPROT;Acc:P46531]
17.3114 -16.81 0.00000958912 400 10 3 14 [+] picture button
PXMP2 SINFRUT00000155101 Peroxisomal membrane protein 2 (22 kDa peroxisomal membrane protein). [Source:Uniprot/SWISSPROT;Acc:Q9NR77]
16.92 -21.05 0.0000119694 400 6 2 10 [+] picture button
STX18 SINFRUT00000139415 Syntaxin-18 (Cell growth-inhibiting gene 9 protein). [Source:Uniprot/SWISSPROT;Acc:Q9P2W9]
16.654 -18.65 0.0000120569 400 6 3 9 [+] picture button
TBC1D2 SINFRUT00000150527 TBC1 domain family member 2 (Prostate antigen recognized and identified by SEREX) (PARIS-1). [Source:Uniprot/SWISSPROT;Acc:Q9BYX2]
16.8731 -16.28 0.0000122993 400 4 4 11 [+] picture button
HECW2 (1 of 2) SINFRUT00000130916 E3 ubiquitin-protein ligase HECW2 (EC 6.3.2.-) (HECT, C2 and WW domain-containing protein 2) (NEDD4-like ubiquitin-protein ligase 2). [Source:Uniprot/SWISSPROT;Acc:Q9P2P5]
17.3114 -20.82 0.0000124879 400 3 2 6 [+] picture button
IRF3 SINFRUT00000137423 Interferon regulatory factor 3 (IRF-3). [Source:Uniprot/SWISSPROT;Acc:Q14653]
17.4209 -19.81 0.0000134313 400 7 1 7 [+] picture button
FDX1 SINFRUT00000160554 Adrenodoxin, mitochondrial precursor (Adrenal ferredoxin) (Ferredoxin- 1) (Hepatoredoxin). [Source:Uniprot/SWISSPROT;Acc:P10109]
16.6909 -16.9 0.0000148645 400 3 2 6 [+] picture button
LMNB1 SINFRUT00000152894 Lamin-B1. [Source:Uniprot/SWISSPROT;Acc:P20700]
16.724 -20.13 0.0000167731 400 7 4 11 [+] picture button
Q7ZTB0_FUGRU SINFRUT00000164044 Tissue inhibitor of metalloproteinases 4. [Source:Uniprot/SPTREMBL;Acc:Q7ZTB0]
16.2746 -19.29 0.0000168146 400 5 3 7 [+] picture button
RAB3C SINFRUT00000154875 Ras-related protein Rab-3C. [Source:Uniprot/SWISSPROT;Acc:Q96E17]
16.1646 -15.78 0.0000168677 400 6 2 7 [+] picture button
Q7SZG1_FUGRU SINFRUT00000138233 Putative tenascin X. [Source:Uniprot/SPTREMBL;Acc:Q7SZG1]
17.2399 -18.79 0.0000172421 400 5 4 7 [+] picture button
PROX1 SINFRUT00000144664 Homeobox prospero-like protein PROX1 (PROX 1). [Source:Uniprot/SWISSPROT;Acc:Q92786]
17.64 -15.38 0.0000172876 400 4 2 4 [+] picture button
PIK3C2G SINFRUT00000163089 Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing gamma polypeptide (EC 2.7.1.154) (Phosphoinositide 3-Kinase-C2-gamma) (PtdIns-3-kinase C2 gamma) (PI3K-C2gamma). [Source:Uniprot/SWISSPROT;Acc:O75747]
17.64 -22.8 0.0000175468 400 4 2 7 [+] picture button
Q7T077_FUGRU SINFRUT00000157526 Putative beta-2 adrenergic receptor. [Source:Uniprot/SPTREMBL;Acc:Q7T077]
17.5245 -17.55 0.0000186076 400 8 3 12 [+] picture button
XR_016355.1 SINFRUT00000136886 similar to Ssu72 RNA polymerase II CTD phosphatase homolog (LOC643263), mRNA [Source:RefSeq_dna;Acc:XR_016355]
16.7635 -24.8 0.0000207783 400 5 2 7 [+] picture button
SINFRUT00000177933 Homolog of Homo sapiens "LKB1 interacting protein [Source:IPI;Acc:IPI00170934]"
16.4348 -16.01 0.0000228141 400 4 2 6 [+] picture button
ETFB SINFRUT00000155202 Electron transfer flavoprotein subunit beta (Beta-ETF). [Source:Uniprot/SWISSPROT;Acc:P38117]
16.3253 -18.56 0.0000234301 400 6 2 8 [+] picture button
TEX9 SINFRUT00000179905 Testis-expressed sequence 9 protein. [Source:Uniprot/SWISSPROT;Acc:Q8N6V9]
16.5444 -17.02 0.0000278678 400 2 1 3 [+] picture button
SAMD12 SINFRUT00000183080 Sterile alpha motif domain-containing protein 12. [Source:Uniprot/SWISSPROT;Acc:Q8N8I0]
16.9121 -13.1 0.0000297697 400 3 2 5 [+] picture button
GAB1 SINFRUT00000151716 GRB2-associated-binding protein 1 (GRB2-associated binder 1). [Source:Uniprot/SWISSPROT;Acc:Q13480]
16.7376 -18.37 0.0000305827 400 6 3 11 [+] picture button
FOXJ3 (2 of 2) SINFRUT00000140484 Forkhead box protein J3. [Source:Uniprot/SWISSPROT;Acc:Q9UPW0]
16.8075 -19.75 0.0000320729 400 4 8 5 [+] picture button

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Download table: GFF TXT
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