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Target Listing


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Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cel-miR-262

127 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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CBG03647 ENSCBRT00000006544 C06A5.2 [Source:RefSeq_peptide;Acc:NP_491736]C06A5.2 [Source:RefSeq_peptide;Acc:NP_491736] BY ORTHOLOGY TO:C06A5.2
17.5441 -17.11 0.00028528 1300 5 1 3 [+] picture button
ENSCBRT00000013308 The ceh-23 gene encodes a homeodomain protein required for a specific differentiated trait of the thermosensory interneuron AIY. [Source: WormBase]The ceh-23 gene encodes a homeodomain protein required for a specific differentiated trait of the thermosensory interneuron AIY. [Source: WormBase] BY ORTHOLOGY TO:ZK652.5
17.932 -18.09 0.000653892 1300 7 1 10 [+] picture button
CBG02485 ENSCBRT00000006501 Probable rRNA-processing protein EBP2 (EBNA1-binding protein 2) (Nucleolar protein p40). [Source:Uniprot/SWISSPROT;Acc:Q99848]Probable rRNA-processing protein EBP2 (EBNA1-binding protein 2) (Nucleolar protein p40). [Source:Uniprot/SWISSPROT;Acc:Q99848] BY ORTHOLOGY TO:ENSGACT00000009038
17.0178 -17.32 0.000985537 1300 5 1 4 [+] picture button
CBG02089 ENSCBRT00000004170 aat-3 encodes an amino acid transporter catalytic subunit. when co-expressed in Xenopus oocytes with the ATG-2 glycoprotein subunit, AAT-3 is able to facilitate amino acid uptake and exchange, showing a relatively high affinity for small and some large neutral amino acids. in addition, AAT-3 is able to covalently associate with ATG-2 or ATG-1 to form heterodimers in the Xenopus expression system. when co-expressed with ATG-2, AAT-3 localizes to the cell surface of oocytes, but when expressed alone, or with ATG-1, AAT-3 localizes intracellularly. [Source: WormBase]aat-3 encodes an amino acid transporter catalytic subunit. when co-expressed in Xenopus oocytes with the ATG-2 glycoprotein subunit, AAT-3 is able to facilitate amino acid uptake and exchange, showing a relatively high affinity for small and some large neutral amino acids. in addition, AAT-3 is able to covalently associate with ATG-2 or ATG-1 to form heterodimers in the Xenopus expression system. when co-expressed with ATG-2, AAT-3 localizes to the cell surface of oocytes, but when expressed alone, or with ATG-1, AAT-3 localizes intracellularly. [Source: WormBase] BY ORTHOLOGY TO:F52H2.2
17.4431 -19.83 0.00126773 1300 2 1 2 [+] picture button
CBG20362 ENSCBRT00000003653 calcium/calmodulin-dependent 3,5-cyclic nucleotide phosphodiesterasecalcium/calmodulin-dependent 3,5-cyclic nucleotide phosphodiesterase BY ORTHOLOGY TO:AAEL010539-RA
17.0655 -14.21 0.00145911 1300 4 1 5 [+] picture button
CBG19875 ENSCBRT00000002420 H35B03.1 [Source:RefSeq_peptide;Acc:NP_500851]H35B03.1 [Source:RefSeq_peptide;Acc:NP_500851] BY ORTHOLOGY TO:H35B03.1
18.3707 -19.38 0.00193426 1300 3 1 2 [+] picture button
CBG22957 ENSCBRT00000008779 F44B9.2 [Source:RefSeq_peptide;Acc:NP_498748]F44B9.2 [Source:RefSeq_peptide;Acc:NP_498748] BY ORTHOLOGY TO:F44B9.2
18.4335 -18.4 0.0023805 1300 2 1 2 [+] picture button
CBG20118 ENSCBRT00000000714 Y111B2A.4 [Source:RefSeq_peptide;Acc:NP_499634]Y111B2A.4 [Source:RefSeq_peptide;Acc:NP_499634] BY ORTHOLOGY TO:Y111B2A.4
16.7576 -16.52 0.00240714 1300 3 1 2 [+] picture button
CBG03460 ENSCBRT00000007209 F32B6.9 [Source:RefSeq_peptide;Acc:NP_501784]F32B6.9 [Source:RefSeq_peptide;Acc:NP_501784] BY ORTHOLOGY TO:F32B6.9
17.081 -17.38 0.00247398 1300 3 1 2 [+] picture button
CBG19430 ENSCBRT00000012833 C50F4.10 [Source:RefSeq_peptide;Acc:NP_505456]C50F4.10 [Source:RefSeq_peptide;Acc:NP_505456] BY ORTHOLOGY TO:C50F4.10
16.536 -22.69 0.00251387 1300 5 1 5 [+] picture button
CBG03654 ENSCBRT00000008754 C01F1.1 [Source:RefSeq_peptide;Acc:NP_494756]C01F1.1 [Source:RefSeq_peptide;Acc:NP_494756] BY ORTHOLOGY TO:C01F1.1
16.4974 -18.85 0.0027116 1300 4 1 3 [+] picture button
CBG01438 ENSCBRT00000002522 PREDICTED: Bos taurus hypothetical LOC540837 (LOC540837), mRNA. [Source:RefSeq_dna;Acc:XR_027922]PREDICTED: Bos taurus hypothetical LOC540837 (LOC540837), mRNA. [Source:RefSeq_dna;Acc:XR_027922] BY ORTHOLOGY TO:ENSBTAT00000012249
16.3502 -11.48 0.00297103 1300 8 1 6 [+] picture button
CBG01828 ENSCBRT00000002904 C39E9.12 [Source:RefSeq_peptide;Acc:NP_502516]C39E9.12 [Source:RefSeq_peptide;Acc:NP_502516] BY ORTHOLOGY TO:C39E9.12
17.33 -21.16 0.00299855 1300 3 1 3 [+] picture button
CBG04368 ENSCBRT00000007707 F22G12.6 [Source:RefSeq_peptide;Acc:NP_493306]F22G12.6 [Source:RefSeq_peptide;Acc:NP_493306] BY ORTHOLOGY TO:F22G12.6
16.821 -20.73 0.00318255 1300 3 2 3 [+] picture button
CBG10044 ENSCBRT00000007283 C48B4.3 [Source:RefSeq_peptide;Acc:NP_499118]C48B4.3 [Source:RefSeq_peptide;Acc:NP_499118] BY ORTHOLOGY TO:C48B4.3
16.4129 -14.79 0.00323865 1300 7 2 9 [+] picture button
CBG12536 ENSCBRT00000014311 D1081.4 [Source:RefSeq_peptide;Acc:NP_492298]D1081.4 [Source:RefSeq_peptide;Acc:NP_492298] BY ORTHOLOGY TO:D1081.4
17.487 -23.37 0.00335423 1300 1 1 1 [+] picture button
CBG22761 ENSCBRT00000004243 The ced-8 gene encodes a homolog of the human putative membrane transporter XK. ced-8 is required for apoptosis to occur with normal speed during embryonic development. [Source: WormBase]The ced-8 gene encodes a homolog of the human putative membrane transporter XK. ced-8 is required for apoptosis to occur with normal speed during embryonic development. [Source: WormBase] BY ORTHOLOGY TO:F08F1.5
16.6664 -22.92 0.00344748 1300 7 1 8 [+] picture button
CBG09985 ENSCBRT00000008134 ADP-ribosylation factor-like protein 5B (ADP-ribosylation factor-like protein 8). [Source:Uniprot/SWISSPROT;Acc:Q96KC2]ADP-ribosylation factor-like protein 5B (ADP-ribosylation factor-like protein 8). [Source:Uniprot/SWISSPROT;Acc:Q96KC2] BY ORTHOLOGY TO:ENSMMUT00000010420
16.8584 -18.22 0.0034807 1300 6 1 5 [+] picture button
CBG04079 ENSCBRT00000009856 The C34B7.1 gene encodes a divergent MYST acetyltransferase that is (apparently) unique to Caenorhabditis. it has no well-characterized orthologs in the complete Drosophila or S. cerevisiae genomes, and no obvious orthologs in the draft human genome sequence either. [Source: WormBase]The C34B7.1 gene encodes a divergent MYST acetyltransferase that is (apparently) unique to Caenorhabditis. it has no well-characterized orthologs in the complete Drosophila or S. cerevisiae genomes, and no obvious orthologs in the draft human genome sequence either. [Source: WormBase] BY ORTHOLOGY TO:C34B7.1
16.5775 -16.14 0.00390143 1300 5 2 8 [+] picture button
CBG23460 ENSCBRT00000011572 F23H12.3 [Source:RefSeq_peptide;Acc:NP_506094]F23H12.3 [Source:RefSeq_peptide;Acc:NP_506094] BY ORTHOLOGY TO:F23H12.3
17.5202 -19.36 0.00390201 1300 3 1 3 [+] picture button
CBG02032 ENSCBRT00000005889 F53B3.6 [Source:RefSeq_peptide;Acc:NP_508496]F53B3.6 [Source:RefSeq_peptide;Acc:NP_508496] BY ORTHOLOGY TO:F53B3.6
16.5259 -18.8 0.00450549 1300 4 1 3 [+] picture button
CBG11444 ENSCBRT00000013911 C06B3.2 [Source:RefSeq_peptide;Acc:NP_506446]C06B3.2 [Source:RefSeq_peptide;Acc:NP_506446] BY ORTHOLOGY TO:C06B3.2
16.4375 -20.64 0.00490891 1300 1 1 1 [+] picture button
CBG00895 ENSCBRT00000003948 R05H5.4 [Source:RefSeq_peptide;Acc:NP_496201]R05H5.4 [Source:RefSeq_peptide;Acc:NP_496201] BY ORTHOLOGY TO:R05H5.4
16.4169 -19.31 0.00510458 1300 5 1 5 [+] picture button
CBG20149 ENSCBRT00000000782 Protein phosphatase PHLPP-like protein (EC 3.1.3.16). [Source:Uniprot/SWISSPROT;Acc:Q09564]Protein phosphatase PHLPP-like protein (EC 3.1.3.16). [Source:Uniprot/SWISSPROT;Acc:Q09564] BY ORTHOLOGY TO:F43C1.1
16.368 -14.42 0.00603806 1300 4 1 3 [+] picture button
CBG20633 ENSCBRT00000001426 R03D7.5 [Source:RefSeq_peptide;Acc:NP_496356]R03D7.5 [Source:RefSeq_peptide;Acc:NP_496356] BY ORTHOLOGY TO:R03D7.5
16.317 -13.74 0.00616128 1300 1 1 1 [+] picture button
CBG20411 ENSCBRT00000003618 T28H11.7 [Source:RefSeq_peptide;Acc:NP_500703]T28H11.7 [Source:RefSeq_peptide;Acc:NP_500703] BY ORTHOLOGY TO:T28H11.7
16.592 -18.1 0.0065556 1300 2 1 4 [+] picture button
CBG03660 ENSCBRT00000008750 C01F1.5 [Source:RefSeq_peptide;Acc:NP_494752]C01F1.5 [Source:RefSeq_peptide;Acc:NP_494752] BY ORTHOLOGY TO:C01F1.5
16.2761 -12.81 0.00665223 1300 7 1 5 [+] picture button
CBG21009 ENSCBRT00000000690 Y17G7B.18a [Source:RefSeq_peptide;Acc:NP_496573]Y17G7B.18a [Source:RefSeq_peptide;Acc:NP_496573] BY ORTHOLOGY TO:Y17G7B.18a
16.3732 -13.06 0.00692036 1300 5 1 5 [+] picture button
CBG23305 ENSCBRT00000012338 Temporarily Assigned Gene name family member (tag-290) [Source:RefSeq_peptide;Acc:NP_505945]Temporarily Assigned Gene name family member (tag-290) [Source:RefSeq_peptide;Acc:NP_505945] BY ORTHOLOGY TO:F35B12.6
16.2544 -14.98 0.00717021 1300 2 1 2 [+] picture button
CBG12344 ENSCBRT00000013098 Craniofacial development protein 1 (Bucentaur). [Source:Uniprot/SWISSPROT;Acc:Q9UEE9]Craniofacial development protein 1 (Bucentaur). [Source:Uniprot/SWISSPROT;Acc:Q9UEE9] BY ORTHOLOGY TO:ENSOANT00000017459
16.2834 -13.12 0.00748388 1300 1 1 1 [+] picture button
CBG06010 ENSCBRT00000008562 GPI-anchor transamidase precursor (EC 3.-.-.-) (GPI transamidase) (Phosphatidylinositol-glycan biosynthesis class K protein) (PIG-K) (hGPI8). [Source:Uniprot/SWISSPROT;Acc:Q92643]GPI-anchor transamidase precursor (EC 3.-.-.-) (GPI transamidase) (Phosphatidylinositol-glycan biosynthesis class K protein) (PIG-K) (hGPI8). [Source:Uniprot/SWISSPROT;Acc:Q92643] BY ORTHOLOGY TO:ENSMODT00000021577
18.6504 -23.9 0.00781742 1300 4 1 4 [+] picture button
CBG16690 ENSCBRT00000014641 clc-2 encodes a claudin homolog, closely similar to CLC-1, that is required for normal cohesion of apical junctions in epithelia. claudins are integral membrane proteins with four transmembrane sequences that are found in mammalian tight junctions (TJs), induce TJs when transgenically expressed in cells normally lacking them, and can mediate the specific conductance of of specific ions (e.g., magnesium or calcium) through TJs while blocking the flow of water. CLC-2 maintains the impermeability ('barrier function') of epithelia, since clc-1(RNAi) animals have abnormal permeability of the hypodermis to dyes. clc-2 is expressed in hypodermal seam cells, with two diffuse lines of CLC-2 protein. [Source: WormBase]clc-2 encodes a claudin homolog, closely similar to CLC-1, that is required for normal cohesion of apical junctions in epithelia. claudins are integral membrane proteins with four transmembrane sequences that are found in mammalian tight junctions (TJs), induce TJs when transgenically expressed in cells normally lacking them, and can mediate the specific conductance of of specific ions (e.g., magnesium or calcium) through TJs while blocking the flow of water. CLC-2 maintains the impermeability ('barrier function') of epithelia, since clc-1(RNAi) animals have abnormal permeability of the hypodermis to dyes. clc-2 is expressed in hypodermal seam cells, with two diffuse lines of CLC-2 protein. [Source: WormBase] BY ORTHOLOGY TO:C01C10.1
18.6432 -21.57 0.00787537 1300 2 1 2 [+] picture button
CBG04719 ENSCBRT00000010553 K02E11.7 [Source:RefSeq_peptide;Acc:NP_506527]K02E11.7 [Source:RefSeq_peptide;Acc:NP_506527] BY ORTHOLOGY TO:K02E11.7
18.5917 -27.59 0.00829689 1300 3 1 3 [+] picture button
CBG16624 ENSCBRT00000014676 R151.1 [Source:RefSeq_peptide;Acc:NP_498588]R151.1 [Source:RefSeq_peptide;Acc:NP_498588] BY ORTHOLOGY TO:R151.1
18.5917 -23.46 0.00829689 1300 4 1 4 [+] picture button
CBG05967 ENSCBRT00000009041 Y69E1A.8 [Source:RefSeq_peptide;Acc:NP_502045]Y69E1A.8 [Source:RefSeq_peptide;Acc:NP_502045] BY ORTHOLOGY TO:Y69E1A.8
16.3001 -20.93 0.0083827 1300 3 1 3 [+] picture button
CBG13303 ENSCBRT00000001039 YY2 transcription factor [Source:RefSeq_peptide;Acc:NP_996806]YY2 transcription factor [Source:RefSeq_peptide;Acc:NP_996806] BY ORTHOLOGY TO:ENSOANT00000009112
16.1822 -14.21 0.00850373 1300 3 1 3 [+] picture button
CBG13100 ENSCBRT00000000098 E04F6.9 [Source:RefSeq_peptide;Acc:NP_495503]E04F6.9 [Source:RefSeq_peptide;Acc:NP_495503] BY ORTHOLOGY TO:E04F6.9
16.2308 -20.95 0.0085842 1300 4 1 4 [+] picture button
CBG03015 ENSCBRT00000007041 vacuolar protein sorting 11 (yeast) [Source:MarkerSymbol;Acc:MGI:1918982]vacuolar protein sorting 11 (yeast) [Source:MarkerSymbol;Acc:MGI:1918982] BY ORTHOLOGY TO:ENSMUST00000034644
18.5373 -23.06 0.00876609 1300 4 1 4 [+] picture button
CBG00888 ENSCBRT00000003952 F33H1.3 [Source:RefSeq_peptide;Acc:NP_496193]F33H1.3 [Source:RefSeq_peptide;Acc:NP_496193] BY ORTHOLOGY TO:F33H1.3
16.4768 -16.73 0.00889057 1300 4 1 6 [+] picture button
CBG10085 ENSCBRT00000007254 Ppme1 protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q4FZT2]Ppme1 protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:Q4FZT2] BY ORTHOLOGY TO:ENSRNOT00000023648
16.4225 -25.18 0.00892481 1300 2 1 2 [+] picture button
CBG08597 ENSCBRT00000002800 ZC443.2 [Source:RefSeq_peptide;Acc:NP_506206]ZC443.2 [Source:RefSeq_peptide;Acc:NP_506206] BY ORTHOLOGY TO:ZC443.2
16.1324 -21.02 0.00897664 1300 1 1 1 [+] picture button
CBG18459 ENSCBRT00000000981 W06A11.1 [Source:RefSeq_peptide;Acc:NP_494718]W06A11.1 [Source:RefSeq_peptide;Acc:NP_494718] BY ORTHOLOGY TO:W06A11.1
16.2308 -18.8 0.0089856 1300 2 1 2 [+] picture button
CBG23912 ENSCBRT00000008171 TIM21-like protein, mitochondrial precursor. [Source:Uniprot/SWISSPROT;Acc:Q9BVV7]TIM21-like protein, mitochondrial precursor. [Source:Uniprot/SWISSPROT;Acc:Q9BVV7] BY ORTHOLOGY TO:SINFRUT00000133188
16.3971 -17.88 0.00991723 1300 3 1 3 [+] picture button
CBG05944 ENSCBRT00000009021 The nhr-8 gene encodes a nuclear hormone receptor homolog. nhr-8(ok186) mutants have abnormally low resistance to the toxins colchicine and chloroquine. [Source: WormBase]The nhr-8 gene encodes a nuclear hormone receptor homolog. nhr-8(ok186) mutants have abnormally low resistance to the toxins colchicine and chloroquine. [Source: WormBase] BY ORTHOLOGY TO:F33D4.1b
16.1873 -17.5 0.0129385 1300 4 2 5 [+] picture button
CBG23453 ENSCBRT00000011571 twk-13 encodes one of 44 C. elegans TWK (two-P domain K+) potassium channel subunits that contain two pore-forming domains and four transmembrane domains. as loss of TWK-13 function via RNA-mediated interference (RNAi) does not result in any abnormalities, the precise role of TWK-13 in C. elegans development and/or behavior is not yet known. however, TWK-13 likely functions redundantly with other TWK channels. the TWK-13 expression pattern has not been determined. [Source: WormBase]twk-13 encodes one of 44 C. elegans TWK (two-P domain K+) potassium channel subunits that contain two pore-forming domains and four transmembrane domains. as loss of TWK-13 function via RNA-mediated interference (RNAi) does not result in any abnormalities, the precise role of TWK-13 in C. elegans development and/or behavior is not yet known. however, TWK-13 likely functions redundantly with other TWK channels. the TWK-13 expression pattern has not been determined. [Source: WormBase] BY ORTHOLOGY TO:R04F11.4
16.3292 -15.15 0.0132719 1300 2 2 2 [+] picture button
CBG18436 ENSCBRT00000000992 DNA replication licensing factor MCM2 (Minichromosome maintenance protein 2 homolog) (Nuclear protein BM28). [Source:Uniprot/SWISSPROT;Acc:P49736]DNA replication licensing factor MCM2 (Minichromosome maintenance protein 2 homolog) (Nuclear protein BM28). [Source:Uniprot/SWISSPROT;Acc:P49736] BY ORTHOLOGY TO:ENSGACT00000000041
18.0158 -17.53 0.0148351 1300 4 2 4 [+] picture button
CBG05203 ENSCBRT00000002601 Y62E10A.14 [Source:RefSeq_peptide;Acc:NP_502583]Y62E10A.14 [Source:RefSeq_peptide;Acc:NP_502583] BY ORTHOLOGY TO:Y62E10A.14
17.9443 -23.1 0.0159409 1300 2 2 2 [+] picture button
CBG14914 ENSCBRT00000004480 T19B4.5 [Source:RefSeq_peptide;Acc:NP_491661]T19B4.5 [Source:RefSeq_peptide;Acc:NP_491661] BY ORTHOLOGY TO:T19B4.5
17.9036 -25.37 0.0166053 1300 2 1 2 [+] picture button
CBG06925 ENSCBRT00000007382 TPR repeat-containing protein ZK370.8. [Source:Uniprot/SWISSPROT;Acc:Q02335]TPR repeat-containing protein ZK370.8. [Source:Uniprot/SWISSPROT;Acc:Q02335] BY ORTHOLOGY TO:ZK370.8
17.836 -19 0.0177702 1300 2 1 2 [+] picture button
CBG22157 ENSCBRT00000004281 Putative complexin-1. [Source:Uniprot/SWISSPROT;Acc:Q9GUM7]Putative complexin-1. [Source:Uniprot/SWISSPROT;Acc:Q9GUM7] BY ORTHOLOGY TO:Y73E7A.4
17.8301 -17.9 0.0178766 1300 7 1 7 [+] picture button

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