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Target Listing


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Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cel-miR-247

166 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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CBG05468 ENSCBRT00000004780 Biogenesis of lysosome-related organelles complex-1 subunit 2 (BLOC subunit 2) (Centrosome-associated protein). [Source:Uniprot/SWISSPROT;Acc:Q6QNY1]Biogenesis of lysosome-related organelles complex-1 subunit 2 (BLOC subunit 2) (Centrosome-associated protein). [Source:Uniprot/SWISSPROT;Acc:Q6QNY1] BY ORTHOLOGY TO:ENSMMUT00000015143
15.3653 -20.83 0.000573427 1300 6 2 7 [+] picture button
CBG02095 ENSCBRT00000004173 syg-1 encodes a novel transmembrane protein that is a member of the immunoglobulin superfamily of proteins. during larval development, SYG-1 activity is required cell autonomously within the HSNL neuron to specify proper synaptic specificity with its targets, such as vulval muscles and the VC neuron. in regulating synapse formation, SYG-1 acts as a receptor for a second immunoglobulin superfamily protein, SYG-2, a synaptic guidepost protein that interacts with SYG-1 and whose activity is essential for proper SYG-1 localization in HSNL. expression of a SYG-1::GFP reporter fusion in HSNL under the control of the unc-86 promoter reveals that SYG-1 localizes to axons and accumulates at future sites of synaptic vesicle clustering, while expression under an endogenous reporter reveals weak expression in head motorneurons, occasionally in HSN neurons, and in other cells in the vulval region. [Source: WormBase]syg-1 encodes a novel transmembrane protein that is a member of the immunoglobulin superfamily of proteins. during larval development, SYG-1 activity is required cell autonomously within the HSNL neuron to specify proper synaptic specificity with its targets, such as vulval muscles and the VC neuron. in regulating synapse formation, SYG-1 acts as a receptor for a second immunoglobulin superfamily protein, SYG-2, a synaptic guidepost protein that interacts with SYG-1 and whose activity is essential for proper SYG-1 localization in HSNL. expression of a SYG-1::GFP reporter fusion in HSNL under the control of the unc-86 promoter reveals that SYG-1 localizes to axons and accumulates at future sites of synaptic vesicle clustering, while expression under an endogenous reporter reveals weak expression in head motorneurons, occasionally in HSN neurons, and in other cells in the vulval region. [Source: WormBase] BY ORTHOLOGY TO:K02E10.8
15.9165 -16.86 0.000680968 1300 7 2 12 [+] picture button
CBG19979 ENSCBRT00000002433 C02B10.2 [Source:RefSeq_peptide;Acc:NP_500721]C02B10.2 [Source:RefSeq_peptide;Acc:NP_500721] BY ORTHOLOGY TO:C02B10.2
16.7958 -20.54 0.000867737 1300 5 2 7 [+] picture button
CBG00991 ENSCBRT00000002166 ZK1307.3 [Source:RefSeq_peptide;Acc:NP_496079]ZK1307.3 [Source:RefSeq_peptide;Acc:NP_496079] BY ORTHOLOGY TO:ZK1307.3
15.3495 -18.14 0.00100045 1300 2 1 2 [+] picture button
CBG05175 ENSCBRT00000002644 DnaJ homolog subfamily B member 6. [Source:Uniprot/SWISSPROT;Acc:Q5F3Z5]DnaJ homolog subfamily B member 6. [Source:Uniprot/SWISSPROT;Acc:Q5F3Z5] BY ORTHOLOGY TO:ENSGALT00000010467
15.8371 -14.98 0.00105643 1300 2 1 4 [+] picture button
CBG18339 ENSCBRT00000001611 Centaurin-gamma 1A. [Source:Uniprot/SWISSPROT;Acc:Q9NGC3]Centaurin-gamma 1A. [Source:Uniprot/SWISSPROT;Acc:Q9NGC3] BY ORTHOLOGY TO:CG31811-RB
14.8746 -13.93 0.00111585 1300 3 2 4 [+] picture button
CBG13881 ENSCBRT00000013664 ngn-1 encodes a member of the neurogenein family that is required for axonal guidance and connectivity of a subset of neurons, and also affects locomotion. [Source: WormBase]ngn-1 encodes a member of the neurogenein family that is required for axonal guidance and connectivity of a subset of neurons, and also affects locomotion. [Source: WormBase] BY ORTHOLOGY TO:Y69A2AR.29
15.9425 -17.3 0.00122478 1300 1 2 3 [+] picture button
CBG06160 ENSCBRT00000008333 NOT ANNOTATED
15.3979 -17.92 0.00135929 1300 5 1 4 [+] picture button
CBG03054 ENSCBRT00000007012 C14A4.13 [Source:RefSeq_peptide;Acc:NP_496292]C14A4.13 [Source:RefSeq_peptide;Acc:NP_496292] BY ORTHOLOGY TO:C14A4.13
15.3004 -16.74 0.00135929 1300 4 1 6 [+] picture button
CBG19952 ENSCBRT00000002458 Transmembrane protein 85 (Cell proliferation-inducing gene 17 protein). [Source:Uniprot/SWISSPROT;Acc:Q5J8M3]Transmembrane protein 85 (Cell proliferation-inducing gene 17 protein). [Source:Uniprot/SWISSPROT;Acc:Q5J8M3] BY ORTHOLOGY TO:ENSOANT00000024743
16.0459 -12.96 0.00147903 1300 4 1 5 [+] picture button
CBG17768 ENSCBRT00000000204 C16C8.2 [Source:RefSeq_peptide;Acc:NP_494540]C16C8.2 [Source:RefSeq_peptide;Acc:NP_494540] BY ORTHOLOGY TO:C16C8.2
15.5018 -13.02 0.00163459 1300 5 2 6 [+] picture button
CBG01819 ENSCBRT00000002887 B0564.9 [Source:RefSeq_peptide;Acc:NP_502528]B0564.9 [Source:RefSeq_peptide;Acc:NP_502528] BY ORTHOLOGY TO:B0564.9
15.4071 -13.02 0.00182632 1300 4 2 6 [+] picture button
CBG20230 ENSCBRT00000001488 rab-39 encodes a small, monomeric Rab GTPase that is most closely related to the human and Drosophila Rab39 GTPases. by homology, RAB-39 is predicted to function as a membrane-associated GTPase required for intracellular vesicular trafficking and for regulation of endo- and exocytosis. however, as loss of rab-39 function via RNA-mediated interference (RNAi) does not result in any obvious abnormalities, the precise role of RAB-39 in C. elegans development and/or behavior is not yet known. [Source: WormBase]rab-39 encodes a small, monomeric Rab GTPase that is most closely related to the human and Drosophila Rab39 GTPases. by homology, RAB-39 is predicted to function as a membrane-associated GTPase required for intracellular vesicular trafficking and for regulation of endo- and exocytosis. however, as loss of rab-39 function via RNA-mediated interference (RNAi) does not result in any obvious abnormalities, the precise role of RAB-39 in C. elegans development and/or behavior is not yet known. [Source: WormBase] BY ORTHOLOGY TO:D2013.1
15.6632 -12.37 0.00185454 1300 2 1 4 [+] picture button
CBG14258 ENSCBRT00000002697 Uncharacterized homeobox protein C02F12.5. [Source:Uniprot/SWISSPROT;Acc:Q11101]Uncharacterized homeobox protein C02F12.5. [Source:Uniprot/SWISSPROT;Acc:Q11101] BY ORTHOLOGY TO:C02F12.5
15.3979 -21.24 0.00196902 1300 2 1 2 [+] picture button
CBG02080 ENSCBRT00000004161 H01M10.1 [Source:RefSeq_peptide;Acc:NP_508466]H01M10.1 [Source:RefSeq_peptide;Acc:NP_508466] BY ORTHOLOGY TO:H01M10.1
15.218 -14.89 0.00197971 1300 5 1 6 [+] picture button
CBG21148 ENSCBRT00000000917 F23F12.3 [Source:RefSeq_peptide;Acc:NP_498433]F23F12.3 [Source:RefSeq_peptide;Acc:NP_498433] BY ORTHOLOGY TO:F23F12.3
15.2625 -14.52 0.0022068 1300 2 1 1 [+] picture button
CBG20858 ENSCBRT00000001285 C01G12.1 [Source:RefSeq_peptide;Acc:NP_497028]C01G12.1 [Source:RefSeq_peptide;Acc:NP_497028] BY ORTHOLOGY TO:C01G12.1
16.515 -17.62 0.00237077 1300 7 1 12 [+] picture button
CBG05700 ENSCBRT00000009216 Hepatocyte nuclear factor 6 (HNF-6) (One cut domain family member 1). [Source:Uniprot/SWISSPROT;Acc:P70512]Hepatocyte nuclear factor 6 (HNF-6) (One cut domain family member 1). [Source:Uniprot/SWISSPROT;Acc:P70512] BY ORTHOLOGY TO:ENSRNOT00000010738
15.2867 -14.92 0.00246726 1300 6 1 8 [+] picture button
CBG02083 ENSCBRT00000004168 Uncharacterized protein KIAA0528. [Source:Uniprot/SWISSPROT;Acc:Q86YS7]Uncharacterized protein KIAA0528. [Source:Uniprot/SWISSPROT;Acc:Q86YS7] BY ORTHOLOGY TO:ENSMODT00000022482
15.2144 -15.26 0.00260888 1300 7 2 8 [+] picture button
CBG11160 ENSCBRT00000014455 Synaptotagmin-1 (Synaptotagmin I). [Source:Uniprot/SWISSPROT;Acc:P34693]Synaptotagmin-1 (Synaptotagmin I). [Source:Uniprot/SWISSPROT;Acc:P34693] BY ORTHOLOGY TO:F31E8.2b
15.2156 -13.48 0.00287806 1300 2 2 2 [+] picture button
CBG01850 ENSCBRT00000002914 F49E11.10 [Source:RefSeq_peptide;Acc:NP_502503]F49E11.10 [Source:RefSeq_peptide;Acc:NP_502503] BY ORTHOLOGY TO:F49E11.10
15.9826 -17.6 0.00303573 1300 2 1 1 [+] picture button
CBG14982 ENSCBRT00000004448 Y44E3B.2 [Source:RefSeq_peptide;Acc:NP_491131]Y44E3B.2 [Source:RefSeq_peptide;Acc:NP_491131] BY ORTHOLOGY TO:Y44E3B.2
15.1146 -16.22 0.00320467 1300 3 2 6 [+] picture button
CBG20945 ENSCBRT00000000617 Serpentine Receptor, class E (epsilon) family member (sre-51) [Source:RefSeq_peptide;Acc:NP_496614]Serpentine Receptor, class E (epsilon) family member (sre-51) [Source:RefSeq_peptide;Acc:NP_496614] BY ORTHOLOGY TO:C50E10.10
15.5773 -8.54 0.00323789 1300 5 1 5 [+] picture button
CBG19042 ENSCBRT00000014049 unc-68 encodes a ryanodine receptor ortholog that is expressed in body-wall muscle cells and is required for normal body tension and locomotion. unc-68 mutants are flaccid, sluggish, and resistant to ryanodine, but have normal muscle ultrastructure. UNC-68 is dispensable for excitation-contraction coupling itself, but may amplify its calcium signals. the unc-68/kra-1(kh30) mutation is an S1444N substitution at a putative protein kinase C phosphorylation site. UNC-68 reduced unc-103(sy557)-induced spicule protraction by one half. unc-68 is orthologous to the human genes RYR1 (OMIM:180901, mutated in malignant hyperthermia and central core disease), RYR2 (OMIM:180902, mutated in stress-induced polymorphic ventricular tachycardia), and RYR3 (OMIM:180903). [Source: WormBase]unc-68 encodes a ryanodine receptor ortholog that is expressed in body-wall muscle cells and is required for normal body tension and locomotion. unc-68 mutants are flaccid, sluggish, and resistant to ryanodine, but have normal muscle ultrastructure. UNC-68 is dispensable for excitation-contraction coupling itself, but may amplify its calcium signals. the unc-68/kra-1(kh30) mutation is an S1444N substitution at a putative protein kinase C phosphorylation site. UNC-68 reduced unc-103(sy557)-induced spicule protraction by one half. unc-68 is orthologous to the human genes RYR1 (OMIM:180901, mutated in malignant hyperthermia and central core disease), RYR2 (OMIM:180902, mutated in stress-induced polymorphic ventricular tachycardia), and RYR3 (OMIM:180903). [Source: WormBase] BY ORTHOLOGY TO:K11C4.5
15.5928 -17.13 0.00391446 1300 4 2 8 [+] picture button
CBG01660 ENSCBRT00000005543 T-cell defective protein 2. [Source:Uniprot/SWISSPROT;Acc:Q9N428]T-cell defective protein 2. [Source:Uniprot/SWISSPROT;Acc:Q9N428] BY ORTHOLOGY TO:Y38C1AA.4
15.008 -13.85 0.00398573 1300 6 1 6 [+] picture button
CBG19201 ENSCBRT00000013356 F21C10.3a [Source:RefSeq_peptide;Acc:NP_741583]F21C10.3a [Source:RefSeq_peptide;Acc:NP_741583] BY ORTHOLOGY TO:F21C10.3a
15.5208 -19.98 0.00400607 1300 6 1 6 [+] picture button
CBG17684 ENSCBRT00000002259 phosphatidate cytidylyltransferasephosphatidate cytidylyltransferase BY ORTHOLOGY TO:AAEL001940-RA
16.2332 -17.38 0.00405195 1300 3 2 5 [+] picture button
CBG17641 ENSCBRT00000002187 ncx-3 encodes a predicted transmembrane Na/Ca exchanger. by homology, NCX-3 is predicted to function as a plasma membrane protein that regulates intracellular calcium homeostasis by moving calcium either into or out of cells, depending upon the net electrochemical force. however, as loss of ncx-3 function via RNA-mediated interference (RNAi) does not result in any obvious abnormalities, the precise role of NCX-3 in C. elegans development and/or behavior is not yet known. [Source: WormBase]ncx-3 encodes a predicted transmembrane Na/Ca exchanger. by homology, NCX-3 is predicted to function as a plasma membrane protein that regulates intracellular calcium homeostasis by moving calcium either into or out of cells, depending upon the net electrochemical force. however, as loss of ncx-3 function via RNA-mediated interference (RNAi) does not result in any obvious abnormalities, the precise role of NCX-3 in C. elegans development and/or behavior is not yet known. [Source: WormBase] BY ORTHOLOGY TO:ZC168.1
14.7618 -13.18 0.00410479 1300 3 1 2 [+] picture button
CBG24041 ENSCBRT00000009807 F09F7.5a [Source:RefSeq_peptide;Acc:NP_498186]F09F7.5a [Source:RefSeq_peptide;Acc:NP_498186] BY ORTHOLOGY TO:F09F7.5b
14.9784 -13.02 0.00443407 1300 4 2 5 [+] picture button
CBG00501 ENSCBRT00000001928 Solute carrier family 35 member B1 (UDP-galactose transporter-related protein 1) (UGTrel1) (hUGTrel1). [Source:Uniprot/SWISSPROT;Acc:P78383]Solute carrier family 35 member B1 (UDP-galactose transporter-related protein 1) (UGTrel1) (hUGTrel1). [Source:Uniprot/SWISSPROT;Acc:P78383] BY ORTHOLOGY TO:SINFRUT00000161583
15.5212 -12.39 0.00449606 1300 5 1 5 [+] picture button
CBG12702 ENSCBRT00000014341 T23B3.4 [Source:RefSeq_peptide;Acc:NP_491918]T23B3.4 [Source:RefSeq_peptide;Acc:NP_491918] BY ORTHOLOGY TO:T23B3.4
15.8953 -13.02 0.0045135 1300 6 2 8 [+] picture button
CBG12118 ENSCBRT00000013304 Serpentine Receptor, class G (gamma) family member (srg-62) [Source:RefSeq_peptide;Acc:NP_503745]Serpentine Receptor, class G (gamma) family member (srg-62) [Source:RefSeq_peptide;Acc:NP_503745] BY ORTHOLOGY TO:C24B9.12
15.1984 -22.84 0.00457431 1300 6 1 4 [+] picture button
CBG03830 ENSCBRT00000008678 Y106G6A.1 [Source:RefSeq_peptide;Acc:NP_492629]Y106G6A.1 [Source:RefSeq_peptide;Acc:NP_492629] BY ORTHOLOGY TO:Y106G6A.1
14.9297 -13.02 0.00467376 1300 2 1 5 [+] picture button
CBG22017 ENSCBRT00000004336 Y48G1BM.9 [Source:RefSeq_peptide;Acc:NP_490707]Y48G1BM.9 [Source:RefSeq_peptide;Acc:NP_490707] BY ORTHOLOGY TO:Y48G1BM.9
17.4358 -22.06 0.00475825 1300 2 1 4 [+] picture button
CBG07670 ENSCBRT00000010646 Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing alpha polypeptide (EC 2.7.1.154) (Phosphoinositide 3-Kinase-C2-alpha) (PtdIns-3-kinase C2 alpha) (PI3K-C2alpha). [Source:Uniprot/SWISSPROT;Acc:O00443]Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing alpha polypeptide (EC 2.7.1.154) (Phosphoinositide 3-Kinase-C2-alpha) (PtdIns-3-kinase C2 alpha) (PI3K-C2alpha). [Source:Uniprot/SWISSPROT;Acc:O00443] BY ORTHOLOGY TO:ENST00000265970
15.061 -15.11 0.00486371 1300 2 1 5 [+] picture button
CBG18408 ENSCBRT00000000983 Y46G5A.29 [Source:RefSeq_peptide;Acc:NP_496734]Y46G5A.29 [Source:RefSeq_peptide;Acc:NP_496734] BY ORTHOLOGY TO:Y46G5A.29
14.9492 -13.66 0.00491327 1300 2 1 4 [+] picture button
CBG02405 ENSCBRT00000006594 A receptor tyrosine phosphatase that negatively regulates the FGF receptorsignaling pathway. it localizes to the plasma membrane. [Source: WormBase]A receptor tyrosine phosphatase that negatively regulates the FGF receptorsignaling pathway. it localizes to the plasma membrane. [Source: WormBase] BY ORTHOLOGY TO:F56D1.4b
15.001 -12.37 0.00506095 1300 3 2 5 [+] picture button
CBG03261 ENSCBRT00000006807 C07H4.1 [Source:RefSeq_peptide;Acc:NP_495939]C07H4.1 [Source:RefSeq_peptide;Acc:NP_495939] BY ORTHOLOGY TO:C07H4.1
14.8959 -20.28 0.00597622 1300 3 1 4 [+] picture button
CBG11224 ENSCBRT00000014490 rpy-1 is orthologous to the human gene 43KDA ACETYLCHOLINE RECEPTOR-ASSOCIATED PROTEIN (RAPSN. OMIM:601592), which when mutated leads to congenital myasthenic syndrome. [Source: WormBase]rpy-1 is orthologous to the human gene 43KDA ACETYLCHOLINE RECEPTOR-ASSOCIATED PROTEIN (RAPSN. OMIM:601592), which when mutated leads to congenital myasthenic syndrome. [Source: WormBase] BY ORTHOLOGY TO:C18H9.7
14.8655 -12.52 0.00607904 1300 2 1 9 [+] picture button
CBG13293 ENSCBRT00000001048 Y47D3B.1 [Source:RefSeq_peptide;Acc:NP_499465]Y47D3B.1 [Source:RefSeq_peptide;Acc:NP_499465] BY ORTHOLOGY TO:Y47D3B.1
15.0254 -17.37 0.00613265 1300 2 2 3 [+] picture button
CBG14588 ENSCBRT00000003297 ZC449.3b [Source:RefSeq_peptide;Acc:NP_741776]ZC449.3b [Source:RefSeq_peptide;Acc:NP_741776] BY ORTHOLOGY TO:ZC449.3b
14.8711 -13.36 0.00617207 1300 3 2 3 [+] picture button
CBG06792 ENSCBRT00000007451 eat-4 encodes an ortholog of the mammalian BNPI vesicular glutamate transporter that affects chemotaxis, feeding, foraging and thermotaxis. eat-4 is expressed in specific neurons, including M3L and M3R which are known to be glutamatergic. [Source: WormBase]eat-4 encodes an ortholog of the mammalian BNPI vesicular glutamate transporter that affects chemotaxis, feeding, foraging and thermotaxis. eat-4 is expressed in specific neurons, including M3L and M3R which are known to be glutamatergic. [Source: WormBase] BY ORTHOLOGY TO:ZK512.6
15.2225 -14.57 0.00619987 1300 2 1 2 [+] picture button
CBG17510 ENSCBRT00000002057 C09F12.2 [Source:RefSeq_peptide;Acc:NP_509848]C09F12.2 [Source:RefSeq_peptide;Acc:NP_509848] BY ORTHOLOGY TO:C09F12.2
14.7979 -17.13 0.0064795 1300 4 2 5 [+] picture button
CBG07580 ENSCBRT00000011134 C05G5.1 [Source:RefSeq_peptide;Acc:NP_510447]C05G5.1 [Source:RefSeq_peptide;Acc:NP_510447] BY ORTHOLOGY TO:C05G5.1
17.1082 -19.64 0.00678696 1300 3 1 4 [+] picture button
CBG12397 ENSCBRT00000013141 F53B6.4 [Source:RefSeq_peptide;Acc:NP_492407]F53B6.4 [Source:RefSeq_peptide;Acc:NP_492407] BY ORTHOLOGY TO:F53B6.4
14.7157 -12.93 0.00718577 1300 3 1 3 [+] picture button
CBG19893 ENSCBRT00000002431 Serpentine Receptor, class D (delta) family member (srd-8) [Source:RefSeq_peptide;Acc:NP_500839]Serpentine Receptor, class D (delta) family member (srd-8) [Source:RefSeq_peptide;Acc:NP_500839] BY ORTHOLOGY TO:B0547.4
14.7157 -13.11 0.00718577 1300 2 1 3 [+] picture button
CBG09949 ENSCBRT00000008112 F40F12.4 [Source:RefSeq_peptide;Acc:NP_499194]F40F12.4 [Source:RefSeq_peptide;Acc:NP_499194] BY ORTHOLOGY TO:F40F12.4
17.0532 -19.94 0.00720316 1300 4 1 4 [+] picture button
CBG22800 ENSCBRT00000004264 D2021.1 [Source:RefSeq_peptide;Acc:NP_509450]D2021.1 [Source:RefSeq_peptide;Acc:NP_509450] BY ORTHOLOGY TO:D2021.1
14.747 -15.64 0.00730427 1300 3 2 6 [+] picture button
CBG08048 ENSCBRT00000003776 phosphatidylinositol synthasephosphatidylinositol synthase BY ORTHOLOGY TO:AAEL014142-RA
15.4636 -11.23 0.00768155 1300 10 1 14 [+] picture button
CBG18327 ENSCBRT00000001621 xenotropic and polytropic retrovirus receptor [Source:RefSeq_peptide;Acc:NP_004727]xenotropic and polytropic retrovirus receptor [Source:RefSeq_peptide;Acc:NP_004727] BY ORTHOLOGY TO:ENSGALT00000006190
14.7504 -12.37 0.00811773 1300 2 1 4 [+] picture button

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