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Target Listing


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Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cel-miR-229

181 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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CBG07597 ENSCBRT00000011123 mbk-1 encodes a putative dual-specificity kinase (predicted to have both serine/threonine and tyrosine substrates) that is orthologous to Drosophila MINIBRAIN and mammalian DYRK1A/MnbK and that has a glutamine/asparagine-rich domain. MBK-1 is found in most or all nuclei, is dispensable for viability, and perturbs olfaction in AWC when overexpressed. [Source: WormBase]mbk-1 encodes a putative dual-specificity kinase (predicted to have both serine/threonine and tyrosine substrates) that is orthologous to Drosophila MINIBRAIN and mammalian DYRK1A/MnbK and that has a glutamine/asparagine-rich domain. MBK-1 is found in most or all nuclei, is dispensable for viability, and perturbs olfaction in AWC when overexpressed. [Source: WormBase] BY ORTHOLOGY TO:T04C10.1
15.7943 -16.39 0.000752783 1300 10 1 14 [+] picture button
CBG12065 ENSCBRT00000011660 RIKEN cDNA 4921504I05 gene [Source:MarkerSymbol;Acc:MGI:1913957]RIKEN cDNA 4921504I05 gene [Source:MarkerSymbol;Acc:MGI:1913957] BY ORTHOLOGY TO:ENSMUST00000068235
16.1204 -14.43 0.00098667 1300 8 2 10 [+] picture button
CBG14733 ENSCBRT00000006784 W01C8.5 [Source:RefSeq_peptide;Acc:NP_508959]W01C8.5 [Source:RefSeq_peptide;Acc:NP_508959] BY ORTHOLOGY TO:W01C8.5
15.9896 -18.02 0.00111336 1300 3 1 8 [+] picture button
CBG21853 ENSCBRT00000004765 Y46H3A.4 [Source:RefSeq_peptide;Acc:NP_503510]Y46H3A.4 [Source:RefSeq_peptide;Acc:NP_503510] BY ORTHOLOGY TO:Y46H3A.4
15.7359 -15.79 0.00180945 1300 5 1 4 [+] picture button
CBG07053 ENSCBRT00000012421 Calcium BiNding protein homolog family member (cbn-1) [Source:RefSeq_peptide;Acc:NP_001022226]Calcium BiNding protein homolog family member (cbn-1) [Source:RefSeq_peptide;Acc:NP_001022226] BY ORTHOLOGY TO:K01A2.11a
15.7266 -20.55 0.00190314 1300 2 1 4 [+] picture button
CBG11573 ENSCBRT00000011381 O-sialoglycoprotein endopeptidase-like protein 1. [Source:Uniprot/SPTREMBL;Acc:Q9H4B0]O-sialoglycoprotein endopeptidase-like protein 1. [Source:Uniprot/SPTREMBL;Acc:Q9H4B0] BY ORTHOLOGY TO:ENSXETT00000021764
15.7559 -21.78 0.00195049 1300 3 2 3 [+] picture button
CBG08137 ENSCBRT00000003732 defective PHArynx development family member (pha-2) [Source:RefSeq_peptide;Acc:NP_508131]defective PHArynx development family member (pha-2) [Source:RefSeq_peptide;Acc:NP_508131] BY ORTHOLOGY TO:M6.3
15.661 -15.01 0.00209736 1300 4 1 4 [+] picture button
CBG14158 ENSCBRT00000002584 ral guanine nucleotide exchange factor,ral guanine nucleotide exchange factor, BY ORTHOLOGY TO:AAEL000858-RA
15.8117 -11.38 0.00218615 1300 1 2 4 [+] picture button
CBG14165 ENSCBRT00000002585 The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). [Source: WormBase]The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). [Source: WormBase] BY ORTHOLOGY TO:F40F4.8
15.4014 -16.14 0.0023994 1300 2 1 2 [+] picture button
CBG22761 ENSCBRT00000004243 The ced-8 gene encodes a homolog of the human putative membrane transporter XK. ced-8 is required for apoptosis to occur with normal speed during embryonic development. [Source: WormBase]The ced-8 gene encodes a homolog of the human putative membrane transporter XK. ced-8 is required for apoptosis to occur with normal speed during embryonic development. [Source: WormBase] BY ORTHOLOGY TO:F08F1.5
16.8229 -21.18 0.00245373 1300 7 1 8 [+] picture button
CBG04099 ENSCBRT00000010110 W03D8.5 [Source:RefSeq_peptide;Acc:NP_491051]W03D8.5 [Source:RefSeq_peptide;Acc:NP_491051] BY ORTHOLOGY TO:W03D8.5
16.1135 -16.94 0.00251341 1300 5 1 5 [+] picture button
CBG19035 ENSCBRT00000014070 gpa-10 encodes a member of the G protein alpha subunit family of heterotrimeric GTPases. it is expressed in ADF, ASI, ASJ, ALN, CAN, LUA, and the spermatheca. [Source: WormBase]gpa-10 encodes a member of the G protein alpha subunit family of heterotrimeric GTPases. it is expressed in ADF, ASI, ASJ, ALN, CAN, LUA, and the spermatheca. [Source: WormBase] BY ORTHOLOGY TO:C55H1.2
15.5249 -18.69 0.00253039 1300 4 1 8 [+] picture button
CBG12413 ENSCBRT00000013156 F32H2.7 [Source:RefSeq_peptide;Acc:NP_492420]F32H2.7 [Source:RefSeq_peptide;Acc:NP_492420] BY ORTHOLOGY TO:F32H2.7
15.7266 -22.57 0.00266334 1300 8 2 10 [+] picture button
CBG19076 ENSCBRT00000013957 npa-1 encodes a large polyprotein precursor that is posttranslationally cleaved to multiple units of ~14.5kDa, each of which is a strong binding protein for fatty acids and retinol (Vitamin A). the lipid binding sites of NPA-1-derived peptides are unusually apolar. NPA-1-derived peptides probably are carrier proteins that enable distribution of these lipids within nematodes. NPA-1-derived peptides are also secreted by parasitic nematode species. [Source: WormBase]npa-1 encodes a large polyprotein precursor that is posttranslationally cleaved to multiple units of ~14.5kDa, each of which is a strong binding protein for fatty acids and retinol (Vitamin A). the lipid binding sites of NPA-1-derived peptides are unusually apolar. NPA-1-derived peptides probably are carrier proteins that enable distribution of these lipids within nematodes. NPA-1-derived peptides are also secreted by parasitic nematode species. [Source: WormBase] BY ORTHOLOGY TO:VC5.3c
15.6307 -22.07 0.00285428 1300 3 1 3 [+] picture button
CBG15312 ENSCBRT00000009582 Y76A2B.4 [Source:RefSeq_peptide;Acc:NP_499800]Y76A2B.4 [Source:RefSeq_peptide;Acc:NP_499800] BY ORTHOLOGY TO:Y76A2B.4
16.3459 -15.65 0.0028671 1300 2 2 2 [+] picture button
CBG06987 ENSCBRT00000012358 Pre-mRNA branch site protein p14 (SF3B 14 kDa subunit). [Source:Uniprot/SWISSPROT;Acc:Q9Y3B4]Pre-mRNA branch site protein p14 (SF3B 14 kDa subunit). [Source:Uniprot/SWISSPROT;Acc:Q9Y3B4] BY ORTHOLOGY TO:ENSMMUT00000001818
16.9332 -18.45 0.00292741 1300 4 1 3 [+] picture button
CBG04646 ENSCBRT00000010534 F47B8.3 [Source:RefSeq_peptide;Acc:NP_506549]F47B8.3 [Source:RefSeq_peptide;Acc:NP_506549] BY ORTHOLOGY TO:F47B8.3
15.478 -20.6 0.00315615 1300 9 1 7 [+] picture button
CBG02821 ENSCBRT00000006247 Uncharacterized protein C20orf52. [Source:Uniprot/SWISSPROT;Acc:P60602]Uncharacterized protein C20orf52. [Source:Uniprot/SWISSPROT;Acc:P60602] BY ORTHOLOGY TO:ENST00000374078
15.8982 -22.97 0.00337748 1300 3 1 2 [+] picture button
CBG13287 ENSCBRT00000001051 Y47D3B.4 [Source:RefSeq_peptide;Acc:NP_499469]Y47D3B.4 [Source:RefSeq_peptide;Acc:NP_499469] BY ORTHOLOGY TO:Y47D3B.4
15.0182 -13.52 0.00346169 1300 4 1 6 [+] picture button
CBG16716 ENSCBRT00000012798 F46C8.3 [Source:RefSeq_peptide;Acc:NP_509272]F46C8.3 [Source:RefSeq_peptide;Acc:NP_509272] BY ORTHOLOGY TO:F46C8.3
15.8908 -21.2 0.00349393 1300 5 2 8 [+] picture button
CBG02017 ENSCBRT00000005879 Gamma-aminobutyric acid type B receptor, subunit 1 precursor (GABA-B receptor 1) (GABA-B-R1) (Gb1). [Source:Uniprot/SWISSPROT;Acc:Q9UBS5]Gamma-aminobutyric acid type B receptor, subunit 1 precursor (GABA-B receptor 1) (GABA-B-R1) (Gb1). [Source:Uniprot/SWISSPROT;Acc:Q9UBS5] BY ORTHOLOGY TO:ENSXETT00000043889
15.3832 -18.96 0.00390889 1300 3 1 4 [+] picture button
CBG21666 ENSCBRT00000004602 Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP) (p102). [Source:Uniprot/SWISSPROT;Acc:P35606]Coatomer subunit beta' (Beta'-coat protein) (Beta'-COP) (p102). [Source:Uniprot/SWISSPROT;Acc:P35606] BY ORTHOLOGY TO:ENSMMUT00000004320
15.5128 -11.21 0.00409668 1300 3 1 3 [+] picture button
CBG02111 ENSCBRT00000004188 CG15627-PA [Source:RefSeq_peptide;Acc:NP_608863]CG15627-PA [Source:RefSeq_peptide;Acc:NP_608863] BY ORTHOLOGY TO:CG15627-RA
15.8318 -15.78 0.00457405 1300 4 1 5 [+] picture button
CBG23614 ENSCBRT00000001534 F13A2.4 [Source:RefSeq_peptide;Acc:NP_504210]F13A2.4 [Source:RefSeq_peptide;Acc:NP_504210] BY ORTHOLOGY TO:F13A2.4
15.2561 -13.94 0.00457405 1300 4 1 6 [+] picture button
CBG10839 ENSCBRT00000001393 T14E8.1b [Source:RefSeq_peptide;Acc:NP_509105]T14E8.1b [Source:RefSeq_peptide;Acc:NP_509105] BY ORTHOLOGY TO:T14E8.1a
14.9683 -13.67 0.00457405 1300 5 2 6 [+] picture button
CBG09399 ENSCBRT00000006408 Nuclear Hormone Receptor family member (nhr-216) [Source:RefSeq_peptide;Acc:NP_504427]Nuclear Hormone Receptor family member (nhr-216) [Source:RefSeq_peptide;Acc:NP_504427] BY ORTHOLOGY TO:T09D3.4
15.0553 -16.48 0.00465111 1300 3 1 2 [+] picture button
CBG03456 ENSCBRT00000007207 The dur-1 ('Dauer UpRegulated') gene encodes proteins (DUR-1A and DUR-1C) that are predicted to be hydrophilic and heat-resistant, and that might participate in anhydrobiosis. expression of at least one dur-1 transcript is upregulated in dauer larvae and other transcripts may be specifically expressed in dauer larvae. [Source: WormBase]The dur-1 ('Dauer UpRegulated') gene encodes proteins (DUR-1A and DUR-1C) that are predicted to be hydrophilic and heat-resistant, and that might participate in anhydrobiosis. expression of at least one dur-1 transcript is upregulated in dauer larvae and other transcripts may be specifically expressed in dauer larvae. [Source: WormBase] BY ORTHOLOGY TO:F25H8.5a
15.9184 -18.45 0.00465111 1300 2 1 1 [+] picture button
CBG04123 ENSCBRT00000010050 Y71F9B.13c [Source:RefSeq_peptide;Acc:NP_871845]Y71F9B.13c [Source:RefSeq_peptide;Acc:NP_871845] BY ORTHOLOGY TO:Y71F9B.13b
15.2344 -23.17 0.0046613 1300 4 2 4 [+] picture button
CBG11325 ENSCBRT00000014380 K07C11.3 [Source:RefSeq_peptide;Acc:NP_505115]K07C11.3 [Source:RefSeq_peptide;Acc:NP_505115] BY ORTHOLOGY TO:K07C11.3
16.1923 -23.31 0.00474454 1300 4 2 4 [+] picture button
CBG19112 ENSCBRT00000013893 C05C8.9a [Source:RefSeq_peptide;Acc:NP_504840]C05C8.9a [Source:RefSeq_peptide;Acc:NP_504840] BY ORTHOLOGY TO:C05C8.9a
16.6593 -18.48 0.00488573 1300 3 2 3 [+] picture button
CBG02095 ENSCBRT00000004173 syg-1 encodes a novel transmembrane protein that is a member of the immunoglobulin superfamily of proteins. during larval development, SYG-1 activity is required cell autonomously within the HSNL neuron to specify proper synaptic specificity with its targets, such as vulval muscles and the VC neuron. in regulating synapse formation, SYG-1 acts as a receptor for a second immunoglobulin superfamily protein, SYG-2, a synaptic guidepost protein that interacts with SYG-1 and whose activity is essential for proper SYG-1 localization in HSNL. expression of a SYG-1::GFP reporter fusion in HSNL under the control of the unc-86 promoter reveals that SYG-1 localizes to axons and accumulates at future sites of synaptic vesicle clustering, while expression under an endogenous reporter reveals weak expression in head motorneurons, occasionally in HSN neurons, and in other cells in the vulval region. [Source: WormBase]syg-1 encodes a novel transmembrane protein that is a member of the immunoglobulin superfamily of proteins. during larval development, SYG-1 activity is required cell autonomously within the HSNL neuron to specify proper synaptic specificity with its targets, such as vulval muscles and the VC neuron. in regulating synapse formation, SYG-1 acts as a receptor for a second immunoglobulin superfamily protein, SYG-2, a synaptic guidepost protein that interacts with SYG-1 and whose activity is essential for proper SYG-1 localization in HSNL. expression of a SYG-1::GFP reporter fusion in HSNL under the control of the unc-86 promoter reveals that SYG-1 localizes to axons and accumulates at future sites of synaptic vesicle clustering, while expression under an endogenous reporter reveals weak expression in head motorneurons, occasionally in HSN neurons, and in other cells in the vulval region. [Source: WormBase] BY ORTHOLOGY TO:K02E10.8
15.1806 -12.97 0.0054253 1300 7 2 12 [+] picture button
CBG00135 ENSCBRT00000001523 small calcium-binding mitochondrial carrier, putativesmall calcium-binding mitochondrial carrier, putative BY ORTHOLOGY TO:AAEL004589-RA
15.2489 -14.27 0.00545157 1300 2 1 7 [+] picture button
CBG18458 ENSCBRT00000000984 R11F4.3 [Source:RefSeq_peptide;Acc:NP_494719]R11F4.3 [Source:RefSeq_peptide;Acc:NP_494719] BY ORTHOLOGY TO:R11F4.3
17.7057 -22.38 0.00552496 1300 4 2 6 [+] picture button
CBG12028 ENSCBRT00000011694 SeMaPhorin related family member (smp-2) [Source:RefSeq_peptide;Acc:NP_491197]SeMaPhorin related family member (smp-2) [Source:RefSeq_peptide;Acc:NP_491197] BY ORTHOLOGY TO:D1037.2
15.2052 -14.2 0.00582218 1300 4 1 7 [+] picture button
CBG19815 ENSCBRT00000000410 cAMP-dependent protein kinase, beta-catalytic subunit (EC 2.7.11.11) (PKA C-beta). [Source:Uniprot/SWISSPROT;Acc:P22694]cAMP-dependent protein kinase, beta-catalytic subunit (EC 2.7.11.11) (PKA C-beta). [Source:Uniprot/SWISSPROT;Acc:P22694] BY ORTHOLOGY TO:ENSMMUT00000004887
15.1991 -14.82 0.00582218 1300 3 1 4 [+] picture button
CBG03299 ENSCBRT00000004998 GALECTIN [Source:Anopheles_symbol;Acc:GALE3]GALECTIN [Source:Anopheles_symbol;Acc:GALE3] BY ORTHOLOGY TO:AGAP004934-RA
15.0823 -21.2 0.00621285 1300 2 1 2 [+] picture button
CBG19749 ENSCBRT00000000351 dihydrouridine synthase 2-like (SMM1, S. cerevisiae) [Source:MarkerSymbol;Acc:MGI:1913619]dihydrouridine synthase 2-like (SMM1, S. cerevisiae) [Source:MarkerSymbol;Acc:MGI:1913619] BY ORTHOLOGY TO:ENSMUST00000034375
17.5877 -22.82 0.00623773 1300 1 1 5 [+] picture button
CBG11682 ENSCBRT00000004137 SNF4/AMP-activated protein kinase gamma subunit CG17299-PD, isoform D [Source:RefSeq_peptide;Acc:NP_732603]SNF4/AMP-activated protein kinase gamma subunit CG17299-PD, isoform D [Source:RefSeq_peptide;Acc:NP_732603] BY ORTHOLOGY TO:CG17299-RF
15.0227 -24.74 0.00667415 1300 2 1 2 [+] picture button
CBG05074 ENSCBRT00000010269 C15B12.8 [Source:RefSeq_peptide;Acc:NP_741814]C15B12.8 [Source:RefSeq_peptide;Acc:NP_741814] BY ORTHOLOGY TO:C15B12.8
16.0142 -17.33 0.00692886 1300 4 1 6 [+] picture button
CBG21774 ENSCBRT00000004669 fem-3 encodes a novel protein that promotes male development in all tissues. [Source: WormBase]fem-3 encodes a novel protein that promotes male development in all tissues. [Source: WormBase] BY ORTHOLOGY TO:C01F6.4
14.994 -11.74 0.00704726 1300 2 2 6 [+] picture button
CBG05799 ENSCBRT00000009084 Seven TM Receptor family member (str-227) [Source:RefSeq_peptide;Acc:NP_503982]Seven TM Receptor family member (str-227) [Source:RefSeq_peptide;Acc:NP_503982] BY ORTHOLOGY TO:C07G3.3
17.4526 -18.76 0.00716575 1300 2 1 3 [+] picture button
CBG05684 ENSCBRT00000005317 F59A1.11 [Source:RefSeq_peptide;Acc:NP_507470]F59A1.11 [Source:RefSeq_peptide;Acc:NP_507470] BY ORTHOLOGY TO:F59A1.11
15.0152 -15.16 0.00732351 1300 3 1 3 [+] picture button
CBG23449 ENSCBRT00000011563 R04F11.1 encodes a claudin homolog that may be required for normal cohesion of apical junctions in epithelia. R04F11.1 is worm-specific, with obvious homologs only in C. elegans. R04F11.1 has no obvious function in mass RNAi assays. claudins are integral membrane proteins with four transmembrane sequences that are found in mammalian tight junctions (TJs), induce TJs when transgenically expressed in cells normally lacking them, and can mediate the specific conductance of of specific ions (e.g., magnesium or calcium) through TJs while blocking the flow of water. [Source: WormBase]R04F11.1 encodes a claudin homolog that may be required for normal cohesion of apical junctions in epithelia. R04F11.1 is worm-specific, with obvious homologs only in C. elegans. R04F11.1 has no obvious function in mass RNAi assays. claudins are integral membrane proteins with four transmembrane sequences that are found in mammalian tight junctions (TJs), induce TJs when transgenically expressed in cells normally lacking them, and can mediate the specific conductance of of specific ions (e.g., magnesium or calcium) through TJs while blocking the flow of water. [Source: WormBase] BY ORTHOLOGY TO:R04F11.1
14.993 -13.4 0.00740411 1300 5 2 8 [+] picture button
CBG10881 ENSCBRT00000001287 Max-binding protein MNT (Protein ROX) (Myc antagonist MNT). [Source:Uniprot/SWISSPROT;Acc:Q99583]Max-binding protein MNT (Protein ROX) (Myc antagonist MNT). [Source:Uniprot/SWISSPROT;Acc:Q99583] BY ORTHOLOGY TO:ENSOANT00000013762
15.0553 -15.9 0.00800707 1300 6 2 8 [+] picture button
CBG07401 ENSCBRT00000011833 TWiK family of potassium channels family member (twk-20) [Source:RefSeq_peptide;Acc:NP_510284]TWiK family of potassium channels family member (twk-20) [Source:RefSeq_peptide;Acc:NP_510284] BY ORTHOLOGY TO:C40C9.1
15.2471 -17.07 0.0086222 1300 5 1 9 [+] picture button
CBG14538 ENSCBRT00000003409 Mesodermal Lineage Specification family member (mls-2) [Source:RefSeq_peptide;Acc:NP_508815]Mesodermal Lineage Specification family member (mls-2) [Source:RefSeq_peptide;Acc:NP_508815] BY ORTHOLOGY TO:C39E6.4
14.8857 -11.86 0.00863859 1300 4 2 6 [+] picture button
CBG14497 ENSCBRT00000003498 C05E11.3 [Source:RefSeq_peptide;Acc:NP_508785]C05E11.3 [Source:RefSeq_peptide;Acc:NP_508785] BY ORTHOLOGY TO:C05E11.3
15.125 -15.21 0.00889265 1300 6 1 9 [+] picture button
CBG15183 ENSCBRT00000010370 K02F3.9 [Source:RefSeq_peptide;Acc:NP_497272]K02F3.9 [Source:RefSeq_peptide;Acc:NP_497272] BY ORTHOLOGY TO:K02F3.9
17.1573 -15.62 0.0097005 1300 7 1 11 [+] picture button
CBG12017 ENSCBRT00000011708 Probable histone-lysine N-methyltransferase lin-59 (EC 2.1.1.43) (Abnormal cell lineage protein 59). [Source:Uniprot/SWISSPROT;Acc:O44757]Probable histone-lysine N-methyltransferase lin-59 (EC 2.1.1.43) (Abnormal cell lineage protein 59). [Source:Uniprot/SWISSPROT;Acc:O44757] BY ORTHOLOGY TO:T12F5.4
16.9732 -22.41 0.0117115 1300 4 1 13 [+] picture button
CBG12252 ENSCBRT00000013314 Probable mitochondrial import receptor subunit TOM7 homolog (Translocase of outer membrane 7 kDa subunit homolog). [Source:Uniprot/SWISSPROT;Acc:Q9P0U1]Probable mitochondrial import receptor subunit TOM7 homolog (Translocase of outer membrane 7 kDa subunit homolog). [Source:Uniprot/SWISSPROT;Acc:Q9P0U1] BY ORTHOLOGY TO:ENSXETT00000057380
16.8508 -15.54 0.0132712 1300 3 1 5 [+] picture button

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