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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cel-miR-227

132 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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CBG05005 ENSCBRT00000010218 C14F11.2 [Source:RefSeq_peptide;Acc:NP_509042]C14F11.2 [Source:RefSeq_peptide;Acc:NP_509042] BY ORTHOLOGY TO:C14F11.2
16.9892 -20.21 0.000001 1300 6 2 2 [+] picture button
CBG00476 ENSCBRT00000001915 N-acylethanolamine-hydrolyzing acid amidase precursor (EC 3.5.1.-) (N- acylsphingosine amidohydrolase-like) (ASAH-like protein). [Source:Uniprot/SWISSPROT;Acc:Q5KTC7]N-acylethanolamine-hydrolyzing acid amidase precursor (EC 3.5.1.-) (N- acylsphingosine amidohydrolase-like) (ASAH-like protein). [Source:Uniprot/SWISSPROT;Acc:Q5KTC7] BY ORTHOLOGY TO:ENSRNOT00000003102
15.8188 -14.05 0.0000154321 1300 9 1 3 [+] picture button
CBG15324 ENSCBRT00000009591 Y48A6B.1 [Source:RefSeq_peptide;Acc:NP_499413]Y48A6B.1 [Source:RefSeq_peptide;Acc:NP_499413] BY ORTHOLOGY TO:Y48A6B.1
17.4919 -21.56 0.000129838 1300 3 2 3 [+] picture button
CBG17304 ENSCBRT00000001230 C35C5.2 [Source:RefSeq_peptide;Acc:NP_509928]C35C5.2 [Source:RefSeq_peptide;Acc:NP_509928] BY ORTHOLOGY TO:C35C5.2
16.7404 -11.02 0.00040724 1300 5 2 5 [+] picture button
CBG06029 ENSCBRT00000008579 R07H5.3b [Source:RefSeq_peptide;Acc:NP_001023329]R07H5.3b [Source:RefSeq_peptide;Acc:NP_001023329] BY ORTHOLOGY TO:R07H5.3a
16.1885 -20.56 0.000891 1300 3 1 3 [+] picture button
CBG21080 ENSCBRT00000000183 F49C12.6 [Source:RefSeq_peptide;Acc:NP_501629]F49C12.6 [Source:RefSeq_peptide;Acc:NP_501629] BY ORTHOLOGY TO:F49C12.6
16.6089 -17.49 0.000916453 1300 3 1 3 [+] picture button
CBG08519 ENSCBRT00000000275 ZK354.7 [Source:RefSeq_peptide;Acc:NP_500774]ZK354.7 [Source:RefSeq_peptide;Acc:NP_500774] BY ORTHOLOGY TO:ZK354.7
15.9772 -19.29 0.00110556 1300 3 1 3 [+] picture button
CBG18745 ENSCBRT00000014527 F02H6.7 [Source:RefSeq_peptide;Acc:NP_502730]F02H6.7 [Source:RefSeq_peptide;Acc:NP_502730] BY ORTHOLOGY TO:F02H6.7
15.8595 -19.29 0.00142406 1300 2 1 1 [+] picture button
ENSCBRT00000014125 ZK1055.5 [Source:RefSeq_peptide;Acc:NP_504673]ZK1055.5 [Source:RefSeq_peptide;Acc:NP_504673] BY ORTHOLOGY TO:ZK1055.5
15.6356 -17.56 0.00151357 1300 7 1 11 [+] picture button
CBG02528 ENSCBRT00000006465 F55C12.6 [Source:RefSeq_peptide;Acc:NP_495173]F55C12.6 [Source:RefSeq_peptide;Acc:NP_495173] BY ORTHOLOGY TO:F55C12.6
15.664 -16.26 0.00176129 1300 6 1 5 [+] picture button
CBG01654 ENSCBRT00000005532 Y38C1AA.9 [Source:RefSeq_peptide;Acc:NP_499871]Y38C1AA.9 [Source:RefSeq_peptide;Acc:NP_499871] BY ORTHOLOGY TO:Y38C1AA.9
16.3426 -20.98 0.00180163 1300 3 1 2 [+] picture button
CBG18981 ENSCBRT00000014114 Palmitoyl-protein thioesterase 1 precursor (EC 3.1.2.22) (PPT-1) (Palmitoyl-protein hydrolase 1). [Source:Uniprot/SWISSPROT;Acc:P50897]Palmitoyl-protein thioesterase 1 precursor (EC 3.1.2.22) (PPT-1) (Palmitoyl-protein hydrolase 1). [Source:Uniprot/SWISSPROT;Acc:P50897] BY ORTHOLOGY TO:ENSORLT00000012141
16.5176 -19.93 0.00229449 1300 6 1 6 [+] picture button
CBG11719 ENSCBRT00000004120 Hypothetical LOC496438. [Source:Uniprot/SPTREMBL;Acc:Q63ZG0]Hypothetical LOC496438. [Source:Uniprot/SPTREMBL;Acc:Q63ZG0] BY ORTHOLOGY TO:ENSXETT00000008133
15.5342 -13.29 0.00286271 1300 2 1 1 [+] picture button
ENSCBRT00000001731 K04C2.5 [Source:RefSeq_peptide;Acc:NP_498500]K04C2.5 [Source:RefSeq_peptide;Acc:NP_498500] BY ORTHOLOGY TO:K04C2.5
16.019 -23.3 0.00293701 1300 5 2 6 [+] picture button
CBG08474 ENSCBRT00000008458 kin-5 encodes a predicted protein tyrosine kinase that is most closely related to the non-receptor tyrosine kinases Fes/Fps and Fer that contain an SH2 domain and a tyrosine kinase domain (OMIM:190030, murine Fes appears to be required for hemopoietic homeostasis). as loss of kin-5 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of kin-5 in C. elegans development and/or behavior is not yet known. [Source: WormBase]kin-5 encodes a predicted protein tyrosine kinase that is most closely related to the non-receptor tyrosine kinases Fes/Fps and Fer that contain an SH2 domain and a tyrosine kinase domain (OMIM:190030, murine Fes appears to be required for hemopoietic homeostasis). as loss of kin-5 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of kin-5 in C. elegans development and/or behavior is not yet known. [Source: WormBase] BY ORTHOLOGY TO:T13H10.1
15.9473 -16.33 0.00321178 1300 1 1 1 [+] picture button
CBG18201 ENSCBRT00000003393 C26E6.2 [Source:RefSeq_peptide;Acc:NP_498049]C26E6.2 [Source:RefSeq_peptide;Acc:NP_498049] BY ORTHOLOGY TO:C26E6.2
15.3491 -16.13 0.00345061 1300 3 1 2 [+] picture button
CBG09969 ENSCBRT00000008160 ZK632.12 [Source:RefSeq_peptide;Acc:NP_499183]ZK632.12 [Source:RefSeq_peptide;Acc:NP_499183] BY ORTHOLOGY TO:ZK632.12
15.7296 -19.37 0.00354407 1300 2 1 1 [+] picture button
CBG23511 ENSCBRT00000011607 T28H10.1 [Source:RefSeq_peptide;Acc:NP_506135]T28H10.1 [Source:RefSeq_peptide;Acc:NP_506135] BY ORTHOLOGY TO:T28H10.1
15.8176 -22.77 0.00359118 1300 3 1 2 [+] picture button
CBG10537 ENSCBRT00000007781 Peroxisomal membrane protein 4 (24 kDa peroxisomal intrinsic membrane protein). [Source:Uniprot/SWISSPROT;Acc:Q9Y6I8]Peroxisomal membrane protein 4 (24 kDa peroxisomal intrinsic membrane protein). [Source:Uniprot/SWISSPROT;Acc:Q9Y6I8] BY ORTHOLOGY TO:ENST00000217398
15.5291 -12.33 0.0043912 1300 4 1 3 [+] picture button
CBG11918 ENSCBRT00000011780 NF-kappa-B inhibitor-interacting Ras-like protein 2 (I-kappa-B- interacting Ras-like protein 2) (Kappa B-Ras protein 2) (KappaB-Ras2). [Source:Uniprot/SWISSPROT;Acc:Q5ZJW6]NF-kappa-B inhibitor-interacting Ras-like protein 2 (I-kappa-B- interacting Ras-like protein 2) (Kappa B-Ras protein 2) (KappaB-Ras2). [Source:Uniprot/SWISSPROT;Acc:Q5ZJW6] BY ORTHOLOGY TO:ENSGALT00000005400
15.1185 -13.09 0.0045542 1300 5 1 4 [+] picture button
CBG04078 ENSCBRT00000009859 C34B7.4 [Source:RefSeq_peptide;Acc:NP_492265]C34B7.4 [Source:RefSeq_peptide;Acc:NP_492265] BY ORTHOLOGY TO:C34B7.4
15.3108 -21.73 0.00458085 1300 4 1 3 [+] picture button
ENSCBRT00000007868 F15D4.7 [Source:RefSeq_peptide;Acc:NP_496808]F15D4.7 [Source:RefSeq_peptide;Acc:NP_496808] BY ORTHOLOGY TO:F15D4.7
15.4176 -11.89 0.0047276 1300 4 1 6 [+] picture button
CBG21355 ENSCBRT00000003793 W10G11.17 [Source:RefSeq_peptide;Acc:NP_494578]W10G11.17 [Source:RefSeq_peptide;Acc:NP_494578] BY ORTHOLOGY TO:W10G11.17
15.5557 -18.66 0.00482129 1300 3 1 3 [+] picture button
CBG04590 ENSCBRT00000010484 C53A5.2 [Source:RefSeq_peptide;Acc:NP_506597]C53A5.2 [Source:RefSeq_peptide;Acc:NP_506597] BY ORTHOLOGY TO:C53A5.2
16.4599 -22.2 0.00549073 1300 3 2 3 [+] picture button
CBG20434 ENSCBRT00000003709 T06C10.3 [Source:RefSeq_peptide;Acc:NP_501307]T06C10.3 [Source:RefSeq_peptide;Acc:NP_501307] BY ORTHOLOGY TO:T06C10.3
17.5621 -20.91 0.00641729 1300 4 1 4 [+] picture button
CBG03161 ENSCBRT00000006906 Peptidyl-prolyl cis-trans isomerase H (EC 5.2.1.8) (PPIase H) (Rotamase H) (U-snRNP-associated cyclophilin SnuCyp-20) (USA-CYP) (Small nuclear ribonucleoprotein particle-specific cyclophilin H) (CypH). [Source:Uniprot/SWISSPROT;Acc:O43447]Peptidyl-prolyl cis-trans isomerase H (EC 5.2.1.8) (PPIase H) (Rotamase H) (U-snRNP-associated cyclophilin SnuCyp-20) (USA-CYP) (Small nuclear ribonucleoprotein particle-specific cyclophilin H) (CypH). [Source:Uniprot/SWISSPROT;Acc:O43447] BY ORTHOLOGY TO:ENSORLT00000005250
15.3979 -20.13 0.00642315 1300 4 1 5 [+] picture button
CBG17492 ENSCBRT00000002272 T12A2.5 [Source:RefSeq_peptide;Acc:NP_498357]T12A2.5 [Source:RefSeq_peptide;Acc:NP_498357] BY ORTHOLOGY TO:T12A2.5
17.4862 -17.97 0.00699119 1300 5 1 5 [+] picture button
CBG08772 ENSCBRT00000000583 Ribosome biogenesis protein BMS1 homolog. [Source:Uniprot/SWISSPROT;Acc:Q14692]Ribosome biogenesis protein BMS1 homolog. [Source:Uniprot/SWISSPROT;Acc:Q14692] BY ORTHOLOGY TO:ENSGACT00000020269
17.4388 -30.5 0.00737564 1300 3 1 3 [+] picture button
CBG16373 ENSCBRT00000011255 SUppressor of activated let-60 Ras family member (sur-7) [Source:RefSeq_peptide;Acc:NP_741942]SUppressor of activated let-60 Ras family member (sur-7) [Source:RefSeq_peptide;Acc:NP_741942] BY ORTHOLOGY TO:F01G12.2b
15.2854 -14.58 0.00739695 1300 4 1 3 [+] picture button
ENSCBRT00000007427 Serpentine receptor class X 45 (Protein srx-45). [Source:Uniprot/SWISSPROT;Acc:P34490]Serpentine receptor class X 45 (Protein srx-45). [Source:Uniprot/SWISSPROT;Acc:P34490] BY ORTHOLOGY TO:K01B6.2
15.203 -17.5 0.00866453 1300 4 2 4 [+] picture button
ENSCBRT00000005915 pseudouridylate synthase 7 homolog (S. cerevisiae)-like [Source:RefSeq_peptide;Acc:NP_112582]pseudouridylate synthase 7 homolog (S. cerevisiae)-like [Source:RefSeq_peptide;Acc:NP_112582] BY ORTHOLOGY TO:ENSXETT00000014881
17.2835 -22.16 0.0087862 1300 3 1 3 [+] picture button
CBG02331 ENSCBRT00000006688 ggr-3 encodes a predicted member of the GABA/ glycine receptor family of ligand-gated chloride channels. expressed in the AVA, AVB, SMDD, DVA, SIAD, and in some other neurons of the nerve ring. [Source: WormBase]ggr-3 encodes a predicted member of the GABA/ glycine receptor family of ligand-gated chloride channels. expressed in the AVA, AVB, SMDD, DVA, SIAD, and in some other neurons of the nerve ring. [Source: WormBase] BY ORTHOLOGY TO:F09C12.1
17.277 -17.9 0.00885084 1300 1 1 1 [+] picture button
CBG03901 ENSCBRT00000010044 hum-7 encodes a class IX unconventional myosin heavy chain that contains a myosin motor domain in the head region and zinc-finger and rhoGAP (rho GTPase activating protein) domains in the tail region. HUM-7 is required during embryogenesis for cytokinesis and normal cytoplasmic rearrangements, and by homology, may function in organization of the actin cytoskeleton. the precise expression and localization patterns of HUM-7 are not yet known. [Source: WormBase]hum-7 encodes a class IX unconventional myosin heavy chain that contains a myosin motor domain in the head region and zinc-finger and rhoGAP (rho GTPase activating protein) domains in the tail region. HUM-7 is required during embryogenesis for cytokinesis and normal cytoplasmic rearrangements, and by homology, may function in organization of the actin cytoskeleton. the precise expression and localization patterns of HUM-7 are not yet known. [Source: WormBase] BY ORTHOLOGY TO:F56A6.2
17.1663 -19.83 0.0100263 1300 2 1 2 [+] picture button
CBG11776 ENSCBRT00000004082 Protein PHosphatase family member (pph-4.1) [Source:RefSeq_peptide;Acc:NP_499603]Protein PHosphatase family member (pph-4.1) [Source:RefSeq_peptide;Acc:NP_499603] BY ORTHOLOGY TO:Y75B8A.30
17.1526 -19.12 0.0101821 1300 3 1 3 [+] picture button
CBG15713 ENSCBRT00000012001 TFIIH basal transcription factor complex helicase subunit (EC 3.6.1.-) (DNA-repair protein complementing XP-D cells) (Xeroderma pigmentosum group D-complementing protein) (CXPD) (DNA excision repair protein ERCC-2). [Source:Uniprot/SWISSPROT;Acc:P18074]TFIIH basal transcription factor complex helicase subunit (EC 3.6.1.-) (DNA-repair protein complementing XP-D cells) (Xeroderma pigmentosum group D-complementing protein) (CXPD) (DNA excision repair protein ERCC-2). [Source:Uniprot/SWISSPROT;Acc:P18074] BY ORTHOLOGY TO:ENSGACT00000016441
17.1279 -19.09 0.0104679 1300 6 1 5 [+] picture button
CBG08867 ENSCBRT00000000530 Serpentine Receptor, class H family member (srh-22) [Source:RefSeq_peptide;Acc:NP_504323]Serpentine Receptor, class H family member (srh-22) [Source:RefSeq_peptide;Acc:NP_504323] BY ORTHOLOGY TO:C02E7.4
17.0606 -19.06 0.0112907 1300 3 1 3 [+] picture button
CBG00806 ENSCBRT00000004002 Nuclear Hormone Receptor family member (nhr-171) [Source:RefSeq_peptide;Acc:NP_504934]Nuclear Hormone Receptor family member (nhr-171) [Source:RefSeq_peptide;Acc:NP_504934] BY ORTHOLOGY TO:C54F6.8
17.0546 -16.79 0.0113676 1300 1 1 1 [+] picture button
CBG20998 ENSCBRT00000000684 Uncharacterized protein C19orf29 (Renal carcinoma antigen NY-REN-24). [Source:Uniprot/SWISSPROT;Acc:Q8WUQ7]Uncharacterized protein C19orf29 (Renal carcinoma antigen NY-REN-24). [Source:Uniprot/SWISSPROT;Acc:Q8WUQ7] BY ORTHOLOGY TO:ENSMODT00000008641
17.0375 -24.55 0.0115885 1300 2 1 3 [+] picture button
CBG11248 ENSCBRT00000014517 vha-18 encodes an an ortholog of subunit H of the cytoplasmic (V1) domain of vacuolar proton-translocating ATPase (V-ATPase). VHA-18 and VHA-15 are co-orthologs. VHA-18 is a predicted cytosolic stator (stalk) component. [Source: WormBase]vha-18 encodes an an ortholog of subunit H of the cytoplasmic (V1) domain of vacuolar proton-translocating ATPase (V-ATPase). VHA-18 and VHA-15 are co-orthologs. VHA-18 is a predicted cytosolic stator (stalk) component. [Source: WormBase] BY ORTHOLOGY TO:F52E1.10
17.0332 -24.01 0.0116447 1300 5 1 7 [+] picture button
CBG20951 ENSCBRT00000000611 Serpentine Receptor, class E (epsilon) family member (sre-41) [Source:RefSeq_peptide;Acc:NP_496628]Serpentine Receptor, class E (epsilon) family member (sre-41) [Source:RefSeq_peptide;Acc:NP_496628] BY ORTHOLOGY TO:Y57A10B.5
16.9417 -18.71 0.0129037 1300 7 1 6 [+] picture button
CBG00384 ENSCBRT00000001978 T02D1.7 [Source:RefSeq_peptide;Acc:NP_503106]T02D1.7 [Source:RefSeq_peptide;Acc:NP_503106] BY ORTHOLOGY TO:T02D1.7
16.8838 -20.86 0.0137698 1300 3 1 3 [+] picture button
CBG11691 ENSCBRT00000004140 Actin-binding protein anillin. [Source:Uniprot/SWISSPROT;Acc:Q9NQW6]Actin-binding protein anillin. [Source:Uniprot/SWISSPROT;Acc:Q9NQW6] BY ORTHOLOGY TO:ENSORLT00000011039
16.7761 -22.36 0.0155339 1300 4 1 3 [+] picture button
CBG09695 ENSCBRT00000005734 F28H7.8 [Source:RefSeq_peptide;Acc:NP_505746]F28H7.8 [Source:RefSeq_peptide;Acc:NP_505746] BY ORTHOLOGY TO:F28H7.8
16.7749 -25.07 0.0155559 1300 2 1 2 [+] picture button
CBG02387 ENSCBRT00000006618 The mog-5 gene encodes a DEAH helicase orthologous to the Drosophila CG8241, the human HRH1, and the S. cerevisiae PRP22 proteins. [Source: WormBase]The mog-5 gene encodes a DEAH helicase orthologous to the Drosophila CG8241, the human HRH1, and the S. cerevisiae PRP22 proteins. [Source: WormBase] BY ORTHOLOGY TO:EEED8.5
16.7736 -16.16 0.0155781 1300 1 1 1 [+] picture button
CBG06236 ENSCBRT00000008215 B0001.1 [Source:RefSeq_peptide;Acc:NP_502303]B0001.1 [Source:RefSeq_peptide;Acc:NP_502303] BY ORTHOLOGY TO:B0001.1
16.7622 -21.7 0.0157772 1300 1 1 1 [+] picture button
CBG06070 ENSCBRT00000008481 Protein LRP16. [Source:Uniprot/SWISSPROT;Acc:Q9BQ69]Protein LRP16. [Source:Uniprot/SWISSPROT;Acc:Q9BQ69] BY ORTHOLOGY TO:ENST00000255681
16.7622 -26.16 0.0157772 1300 7 1 11 [+] picture button
CBG21904 ENSCBRT00000008217 Histidine triad nucleotide-binding protein 2 (EC 3.-.-.-) (HINT-2) (HINT-3) (HIT-17kDa) (PKCI-1-related HIT protein). [Source:Uniprot/SWISSPROT;Acc:Q9BX68]Histidine triad nucleotide-binding protein 2 (EC 3.-.-.-) (HINT-2) (HINT-3) (HIT-17kDa) (PKCI-1-related HIT protein). [Source:Uniprot/SWISSPROT;Acc:Q9BX68] BY ORTHOLOGY TO:ENSMMUT00000022943
16.717 -20.66 0.0165958 1300 7 2 7 [+] picture button
CBG08668 ENSCBRT00000002945 Y58A7A.4 [Source:RefSeq_peptide;Acc:NP_504361]Y58A7A.4 [Source:RefSeq_peptide;Acc:NP_504361] BY ORTHOLOGY TO:Y58A7A.4
16.7157 -27.39 0.0166199 1300 2 1 2 [+] picture button
CBG22021 ENSCBRT00000004338 Phosphoserine aminotransferase (EC 2.6.1.52) (PSAT). [Source:Uniprot/SWISSPROT;Acc:Q9Y617]Phosphoserine aminotransferase (EC 2.6.1.52) (PSAT). [Source:Uniprot/SWISSPROT;Acc:Q9Y617] BY ORTHOLOGY TO:ENST00000376588
16.6037 -19.14 0.0188341 1300 2 1 3 [+] picture button
ENSCBRT00000008000 Nuclear Hormone Receptor family member (nhr-239) [Source:RefSeq_peptide;Acc:NP_497579]Nuclear Hormone Receptor family member (nhr-239) [Source:RefSeq_peptide;Acc:NP_497579] BY ORTHOLOGY TO:Y54F10AM.1
16.5673 -16.21 0.0196124 1300 2 1 2 [+] picture button

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