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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cbr-miR-70

156 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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CBG04128 ENSCBRT00000010048 crs-1 encodes a predicted cytoplasmic cysteinyl-tRNA synthetase (CysRS), a class I aminoacyl-tRNA synthetase that catalyzes the attachment of cysteine to its cognate tRNA and is thus required for protein biosynthesis. CRS-1 is essential for embryonic and larval development, and is required for molting and a normal rate of postembryonic development. [Source: WormBase]crs-1 encodes a predicted cytoplasmic cysteinyl-tRNA synthetase (CysRS), a class I aminoacyl-tRNA synthetase that catalyzes the attachment of cysteine to its cognate tRNA and is thus required for protein biosynthesis. CRS-1 is essential for embryonic and larval development, and is required for molting and a normal rate of postembryonic development. [Source: WormBase] BY ORTHOLOGY TO:Y23H5A.7b
17.196 -18.03 0.000113546 1300 10 1 14 [+] picture button
CBG17408 ENSCBRT00000001189 F13D2.1 [Source:RefSeq_peptide;Acc:NP_509864]F13D2.1 [Source:RefSeq_peptide;Acc:NP_509864] BY ORTHOLOGY TO:F13D2.1
15.8733 -19.08 0.000151852 1300 4 2 2 [+] picture button
CBG19146 ENSCBRT00000013396 Seven TM Receptor family member (str-86) [Source:RefSeq_peptide;Acc:NP_505320]Seven TM Receptor family member (str-86) [Source:RefSeq_peptide;Acc:NP_505320] BY ORTHOLOGY TO:F59E11.14
16.2048 -11.82 0.000449965 1300 4 1 4 [+] picture button
CBG08103 ENSCBRT00000003638 ImmunoGlobulin-like Cell adhesion Molecule family member (igcm-1) [Source:RefSeq_peptide;Acc:NP_508166]ImmunoGlobulin-like Cell adhesion Molecule family member (igcm-1) [Source:RefSeq_peptide;Acc:NP_508166] BY ORTHOLOGY TO:F39H12.4
16.3031 -18.23 0.000519017 1300 6 2 11 [+] picture button
CBG12183 ENSCBRT00000013216 hypothetical protein LOC402825 (LOC402825), misc RNA [Source:RefSeq_dna;Acc:XR_029804]hypothetical protein LOC402825 (LOC402825), misc RNA [Source:RefSeq_dna;Acc:XR_029804] BY ORTHOLOGY TO:ENSDART00000011657
15.7601 -16.73 0.000600938 1300 3 1 2 [+] picture button
CBG02789 ENSCBRT00000006146 Y81G3A.5 [Source:RefSeq_peptide;Acc:NP_496783]Y81G3A.5 [Source:RefSeq_peptide;Acc:NP_496783] BY ORTHOLOGY TO:Y81G3A.5
16.4398 -15.29 0.000744573 1300 3 1 2 [+] picture button
CBG20003 ENSCBRT00000002523 lam-1 encodes a laminin beta that affects degenerin-induced cell death and is required redundantly with lam-2 for morphogenesis. [Source: WormBase]lam-1 encodes a laminin beta that affects degenerin-induced cell death and is required redundantly with lam-2 for morphogenesis. [Source: WormBase] BY ORTHOLOGY TO:W03F8.5
17.1262 -16.84 0.00147433 1300 8 1 10 [+] picture button
CBG18913 ENSCBRT00000014167 T28C12.1 [Source:RefSeq_peptide;Acc:NP_504617]T28C12.1 [Source:RefSeq_peptide;Acc:NP_504617] BY ORTHOLOGY TO:T28C12.1
15.7273 -17.47 0.00150934 1300 3 2 2 [+] picture button
CBG07904 ENSCBRT00000004830 Y46G5A.13 [Source:RefSeq_peptide;Acc:NP_496718]Y46G5A.13 [Source:RefSeq_peptide;Acc:NP_496718] BY ORTHOLOGY TO:Y46G5A.13
15.3314 -16.06 0.00151813 1300 5 1 4 [+] picture button
CBG19344 ENSCBRT00000013531 ZK287.7 [Source:RefSeq_peptide;Acc:NP_505498]ZK287.7 [Source:RefSeq_peptide;Acc:NP_505498] BY ORTHOLOGY TO:ZK287.7
15.8727 -22 0.00160236 1300 2 1 2 [+] picture button
CBG14610 ENSCBRT00000003225 C42D8.1 [Source:RefSeq_peptide;Acc:NP_508869]C42D8.1 [Source:RefSeq_peptide;Acc:NP_508869] BY ORTHOLOGY TO:C42D8.1
15.4692 -15.06 0.00171845 1300 8 1 6 [+] picture button
CBG05504 ENSCBRT00000004831 C49A9.7 [Source:RefSeq_peptide;Acc:NP_500930]C49A9.7 [Source:RefSeq_peptide;Acc:NP_500930] BY ORTHOLOGY TO:C49A9.7
15.6637 -17.19 0.00187648 1300 6 2 7 [+] picture button
CBG00375 ENSCBRT00000001988 Rab-like protein 5. [Source:Uniprot/SWISSPROT;Acc:Q5FVJ7]Rab-like protein 5. [Source:Uniprot/SWISSPROT;Acc:Q5FVJ7] BY ORTHOLOGY TO:ENSRNOT00000046412
15.536 -20.48 0.00192632 1300 3 1 3 [+] picture button
CBG17362 ENSCBRT00000001150 Guanylyl CYclase family member (gcy-9) [Source:RefSeq_peptide;Acc:NP_509897]Guanylyl CYclase family member (gcy-9) [Source:RefSeq_peptide;Acc:NP_509897] BY ORTHOLOGY TO:ZK455.2
15.3522 -20.72 0.00219688 1300 4 1 2 [+] picture button
CBG22794 ENSCBRT00000004260 flp-5 encodes a predicted FMRFamide-like peptide neurotransmitter that increases action potential frequency in the pharyngeal muscle when applied to the pharynx of dissected worms. expressed in the sensory neurons ASE and PVM. [Source: WormBase]flp-5 encodes a predicted FMRFamide-like peptide neurotransmitter that increases action potential frequency in the pharyngeal muscle when applied to the pharynx of dissected worms. expressed in the sensory neurons ASE and PVM. [Source: WormBase] BY ORTHOLOGY TO:C03G5.7
15.586 -16.54 0.00248831 1300 3 1 2 [+] picture button
CBG21712 ENSCBRT00000004577 The oma-2 gene encodes a zinc finger protein of the TIS11 finger type that is paralogous to OMA-1. while either oma-1 or oma-2 individually have no obvious mutant phenotype, a normal copy of at least one of these genes is required for oocyte maturation. [Source: WormBase]The oma-2 gene encodes a zinc finger protein of the TIS11 finger type that is paralogous to OMA-1. while either oma-1 or oma-2 individually have no obvious mutant phenotype, a normal copy of at least one of these genes is required for oocyte maturation. [Source: WormBase] BY ORTHOLOGY TO:ZC513.6
15.39 -17.98 0.00334404 1300 3 2 3 [+] picture button
CBG06983 ENSCBRT00000012349 C50D2.1 [Source:RefSeq_peptide;Acc:NP_493663]C50D2.1 [Source:RefSeq_peptide;Acc:NP_493663] BY ORTHOLOGY TO:C50D2.1
15.1374 -20.01 0.00344966 1300 7 1 6 [+] picture button
CBG18871 ENSCBRT00000012670 gpdh-1 encodes one of two C. elegans glycerol 3-phosphate dehydrogenases. although loss of gpdh-1 activity via large-scale RNAi screens results in no obvious defects, gpdh-1 mRNA expression is upregulated in response to hypertonicity, suggesting that GPDH-1 does play a role in osmotic stress adaptation in C. elegans. [Source: WormBase]gpdh-1 encodes one of two C. elegans glycerol 3-phosphate dehydrogenases. although loss of gpdh-1 activity via large-scale RNAi screens results in no obvious defects, gpdh-1 mRNA expression is upregulated in response to hypertonicity, suggesting that GPDH-1 does play a role in osmotic stress adaptation in C. elegans. [Source: WormBase] BY ORTHOLOGY TO:F47G4.3
15.8161 -21.48 0.00353249 1300 5 2 4 [+] picture button
CBG00076 ENSCBRT00000001580 F22E10.5 [Source:RefSeq_peptide;Acc:NP_510130]F22E10.5 [Source:RefSeq_peptide;Acc:NP_510130] BY ORTHOLOGY TO:F22E10.5
15.6226 -19.34 0.00354811 1300 2 1 2 [+] picture button
CBG05489 ENSCBRT00000004848 Serpentine Receptor, class V family member (srv-28) [Source:RefSeq_peptide;Acc:NP_001023383]Serpentine Receptor, class V family member (srv-28) [Source:RefSeq_peptide;Acc:NP_001023383] BY ORTHOLOGY TO:T13A10.14
15.3686 -20.13 0.0039168 1300 2 1 2 [+] picture button
CBG17658 ENSCBRT00000002219 E02H9.5 is orthologous to the human gene LPH PREPRO-POLYPEPTIDE (AA -19 TO 1908) (LCT. OMIM:603202), which when mutated leads to disease. [Source: WormBase]E02H9.5 is orthologous to the human gene LPH PREPRO-POLYPEPTIDE (AA -19 TO 1908) (LCT. OMIM:603202), which when mutated leads to disease. [Source: WormBase] BY ORTHOLOGY TO:E02H9.5
15.3511 -12.48 0.00402075 1300 2 1 2 [+] picture button
ENSCBRT00000009896 hypothetical protein LOC571340 [Source:RefSeq_peptide;Acc:NP_001025434]hypothetical protein LOC571340 [Source:RefSeq_peptide;Acc:NP_001025434] BY ORTHOLOGY TO:ENSDART00000057548
17.6964 -28.85 0.00404473 1300 4 1 3 [+] picture button
CBG06260 ENSCBRT00000007068 Serpentine Receptor, class E (epsilon) family member (sre-14) [Source:RefSeq_peptide;Acc:NP_502328]Serpentine Receptor, class E (epsilon) family member (sre-14) [Source:RefSeq_peptide;Acc:NP_502328] BY ORTHOLOGY TO:C42C1.1
15.6226 -17.6 0.00422003 1300 5 2 5 [+] picture button
CBG13407 ENSCBRT00000009431 K02F6.4 [Source:RefSeq_peptide;Acc:NP_494293]K02F6.4 [Source:RefSeq_peptide;Acc:NP_494293] BY ORTHOLOGY TO:K02F6.4
15.8228 -13.78 0.00444341 1300 6 1 5 [+] picture button
CBG14495 ENSCBRT00000003507 amt-1 encodes a transmembrane transporter that by homology, is predicted to transport ammonium ions across the plasma membrane. as loss of amt-1 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of AMT-1 in C. elegans development and/or behavior is not yet known. [Source: WormBase]amt-1 encodes a transmembrane transporter that by homology, is predicted to transport ammonium ions across the plasma membrane. as loss of amt-1 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of AMT-1 in C. elegans development and/or behavior is not yet known. [Source: WormBase] BY ORTHOLOGY TO:C05E11.4
15.0031 -15.4 0.00458917 1300 6 1 6 [+] picture button
CBG01450 ENSCBRT00000001901 ZC190.2 [Source:RefSeq_peptide;Acc:NP_505236]ZC190.2 [Source:RefSeq_peptide;Acc:NP_505236] BY ORTHOLOGY TO:ZC190.2
17.5354 -12.54 0.00484234 1300 5 1 8 [+] picture button
CBG03354 ENSCBRT00000007127 Y54G2A.35 [Source:RefSeq_peptide;Acc:NP_741350]Y54G2A.35 [Source:RefSeq_peptide;Acc:NP_741350] BY ORTHOLOGY TO:Y54G2A.35
15.6982 -16.67 0.00492842 1300 6 1 7 [+] picture button
CBG08380 ENSCBRT00000013052 R10H10.4 [Source:RefSeq_peptide;Acc:NP_501920]R10H10.4 [Source:RefSeq_peptide;Acc:NP_501920] BY ORTHOLOGY TO:R10H10.4
15.0664 -11.85 0.00520026 1300 3 2 4 [+] picture button
CBG06269 ENSCBRT00000007062 C42C1.12 [Source:RefSeq_peptide;Acc:NP_502336]C42C1.12 [Source:RefSeq_peptide;Acc:NP_502336] BY ORTHOLOGY TO:C42C1.12
15.1374 -17.49 0.00536415 1300 2 1 2 [+] picture button
CBG17406 ENSCBRT00000001179 F13D2.3 [Source:RefSeq_peptide;Acc:NP_509866]F13D2.3 [Source:RefSeq_peptide;Acc:NP_509866] BY ORTHOLOGY TO:F13D2.3
15.1706 -11.98 0.00584806 1300 4 2 5 [+] picture button
CBG05032 ENSCBRT00000010227 mom-1 encodes a predicted O-acyltransferase that is orthologous to Porcupine proteins conserved across a wide range of species. MOM-1 functions as part of a Wnt/MAPK signaling pathway that is required maternally for endoderm induction in the early embryo. by homology, MOM-1 is predicted to be a membrane-spanning endoplasmic reticulum protein that stimulates post-translational processing of Wnt signaling molecules such as MOM-2. embryonic mosaic analysis indicates that MOM-1 activity is required in the signaling cell, P2, for proper specification of endoderm, consistent with its predicted role in processing MOM-2/Wnt. [Source: WormBase]mom-1 encodes a predicted O-acyltransferase that is orthologous to Porcupine proteins conserved across a wide range of species. MOM-1 functions as part of a Wnt/MAPK signaling pathway that is required maternally for endoderm induction in the early embryo. by homology, MOM-1 is predicted to be a membrane-spanning endoplasmic reticulum protein that stimulates post-translational processing of Wnt signaling molecules such as MOM-2. embryonic mosaic analysis indicates that MOM-1 activity is required in the signaling cell, P2, for proper specification of endoderm, consistent with its predicted role in processing MOM-2/Wnt. [Source: WormBase] BY ORTHOLOGY TO:T07H6.2
17.3572 -20.42 0.00590849 1300 4 1 4 [+] picture button
CBG10025 ENSCBRT00000007309 F58A4.1 [Source:RefSeq_peptide;Acc:NP_499123]F58A4.1 [Source:RefSeq_peptide;Acc:NP_499123] BY ORTHOLOGY TO:F58A4.1
15.0708 -17.43 0.0059383 1300 2 1 2 [+] picture button
CBG20482 ENSCBRT00000003882 W01A8.6 [Source:RefSeq_peptide;Acc:NP_492003]W01A8.6 [Source:RefSeq_peptide;Acc:NP_492003] BY ORTHOLOGY TO:W01A8.6
15.0021 -16.35 0.00594193 1300 3 1 3 [+] picture button
CBG09343 ENSCBRT00000006352 F25B4.4 [Source:RefSeq_peptide;Acc:NP_504497]F25B4.4 [Source:RefSeq_peptide;Acc:NP_504497] BY ORTHOLOGY TO:F25B4.4
15.0619 -14.48 0.00647667 1300 2 1 2 [+] picture button
CBG05744 ENSCBRT00000009142 ZK381.5 encodes a homolog of Drosophila ESPINAS and PRICKLE, and of human PRICKLE1, PRICKLE2, and LMO6. ZK381.5 enables Wnt-directed planar cell polarity. ZK381.5 is required for the fully asymmetrical division of B.a versus B.p cells, though this requirement is quantitatively weak. [Source: WormBase]ZK381.5 encodes a homolog of Drosophila ESPINAS and PRICKLE, and of human PRICKLE1, PRICKLE2, and LMO6. ZK381.5 enables Wnt-directed planar cell polarity. ZK381.5 is required for the fully asymmetrical division of B.a versus B.p cells, though this requirement is quantitatively weak. [Source: WormBase] BY ORTHOLOGY TO:ZK381.5b
17.2487 -26.09 0.0066685 1300 3 1 3 [+] picture button
CBG09836 ENSCBRT00000008010 Y71H2AL.1 [Source:RefSeq_peptide;Acc:NP_497601]Y71H2AL.1 [Source:RefSeq_peptide;Acc:NP_497601] BY ORTHOLOGY TO:Y71H2AL.1
14.9288 -16.26 0.00691109 1300 7 1 6 [+] picture button
CBG19019 ENSCBRT00000014082 Germinal Center Kinase family member (gck-2) [Source:RefSeq_peptide;Acc:NP_504721]Germinal Center Kinase family member (gck-2) [Source:RefSeq_peptide;Acc:NP_504721] BY ORTHOLOGY TO:ZC404.9
16.0312 -21.78 0.00703431 1300 6 2 7 [+] picture button
CBG09587 ENSCBRT00000005904 K07C5.2 [Source:RefSeq_peptide;Acc:NP_505658]K07C5.2 [Source:RefSeq_peptide;Acc:NP_505658] BY ORTHOLOGY TO:K07C5.2
17.1142 -20.19 0.00774676 1300 3 1 2 [+] picture button
CBG04719 ENSCBRT00000010553 K02E11.7 [Source:RefSeq_peptide;Acc:NP_506527]K02E11.7 [Source:RefSeq_peptide;Acc:NP_506527] BY ORTHOLOGY TO:K02E11.7
14.8463 -12.51 0.00818158 1300 3 1 3 [+] picture button
CBG18196 ENSCBRT00000003397 F-box protein 45 [Source:MarkerSymbol;Acc:MGI:2447775]F-box protein 45 [Source:MarkerSymbol;Acc:MGI:2447775] BY ORTHOLOGY TO:ENSRNOT00000002391
15.6599 -17.73 0.00822213 1300 6 1 8 [+] picture button
CBG00448 ENSCBRT00000001935 C49C3.8 [Source:RefSeq_peptide;Acc:NP_503085]C49C3.8 [Source:RefSeq_peptide;Acc:NP_503085] BY ORTHOLOGY TO:C49C3.8
15.4401 -16.86 0.00822213 1300 4 1 4 [+] picture button
CBG01909 ENSCBRT00000005753 R07B1.6 [Source:RefSeq_peptide;Acc:NP_509654]R07B1.6 [Source:RefSeq_peptide;Acc:NP_509654] BY ORTHOLOGY TO:R07B1.6
14.8091 -11.86 0.00882427 1300 5 1 6 [+] picture button
ENSCBRT00000000264 Y48G8AR.3 [Source:RefSeq_peptide;Acc:NP_490839]Y48G8AR.3 [Source:RefSeq_peptide;Acc:NP_490839] BY ORTHOLOGY TO:Y48G8AR.3
14.8085 -14.81 0.00883376 1300 4 1 4 [+] picture button
CBG11233 ENSCBRT00000014493 T14B4.8 [Source:RefSeq_peptide;Acc:NP_495370]T14B4.8 [Source:RefSeq_peptide;Acc:NP_495370] BY ORTHOLOGY TO:T14B4.8
16.9725 -16.85 0.0090709 1300 2 1 2 [+] picture button
CBG00248 ENSCBRT00000000230 cyp-8 encodes a peptidyl-propyl cis-trans isomerase of the cyclophilin family. cyclophilins are implicated in protein folding, however the precise role of cyp-8 is not known. a CYP-8-fusion protein localises specifically to gut cell nuclei. [Source: WormBase]cyp-8 encodes a peptidyl-propyl cis-trans isomerase of the cyclophilin family. cyclophilins are implicated in protein folding, however the precise role of cyp-8 is not known. a CYP-8-fusion protein localises specifically to gut cell nuclei. [Source: WormBase] BY ORTHOLOGY TO:D1009.2b
16.9354 -16.24 0.00945328 1300 3 1 3 [+] picture button
CBG11215 ENSCBRT00000014410 BRCA2 and CDKN1A-interacting protein (Protein TOK-1). [Source:Uniprot/SWISSPROT;Acc:Q9P287]BRCA2 and CDKN1A-interacting protein (Protein TOK-1). [Source:Uniprot/SWISSPROT;Acc:Q9P287] BY ORTHOLOGY TO:ENSPTRT00000005794
16.868 -20.96 0.0101884 1300 2 1 2 [+] picture button
CBG18057 ENSCBRT00000003156 Eukaryotic translation initiation factor 4E transporter (eIF4E transporter) (4E-T) (Eukaryotic translation initiation factor 4E nuclear import factor 1). [Source:Uniprot/SWISSPROT;Acc:Q9NRA8]Eukaryotic translation initiation factor 4E transporter (eIF4E transporter) (4E-T) (Eukaryotic translation initiation factor 4E nuclear import factor 1). [Source:Uniprot/SWISSPROT;Acc:Q9NRA8] BY ORTHOLOGY TO:SINFRUT00000150769
15.5329 -22.53 0.0104016 1300 2 2 2 [+] picture button
CBG11531 ENSCBRT00000013804 Tubulin folding cofactor B (Tubulin-specific chaperone B) (Cytoskeleton-associated protein 1) (Cytoskeleton-associated protein CKAPI). [Source:Uniprot/SWISSPROT;Acc:Q99426]Tubulin folding cofactor B (Tubulin-specific chaperone B) (Cytoskeleton-associated protein 1) (Cytoskeleton-associated protein CKAPI). [Source:Uniprot/SWISSPROT;Acc:Q99426] BY ORTHOLOGY TO:ENSXETT00000041323
16.797 -20.76 0.011024 1300 4 2 4 [+] picture button
CBG04861 ENSCBRT00000010203 F26D2.10 [Source:RefSeq_peptide;Acc:NP_507152]F26D2.10 [Source:RefSeq_peptide;Acc:NP_507152] BY ORTHOLOGY TO:F26D2.10
16.7461 -12.35 0.0116644 1300 4 2 5 [+] picture button
CBG03729 ENSCBRT00000011169 C04F12.6 [Source:RefSeq_peptide;Acc:NP_492578]C04F12.6 [Source:RefSeq_peptide;Acc:NP_492578] BY ORTHOLOGY TO:C04F12.6
16.7459 -18.64 0.0116679 1300 2 1 2 [+] picture button

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