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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cbr-miR-268

105 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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CBG15748 ENSCBRT00000012083 Y37D8A.4 [Source:RefSeq_peptide;Acc:NP_499670]Y37D8A.4 [Source:RefSeq_peptide;Acc:NP_499670] BY ORTHOLOGY TO:Y37D8A.4
17.1998 -20.59 0.000599169 1300 4 1 3 [+] picture button
CBG16529 ENSCBRT00000014597 R144.5 [Source:RefSeq_peptide;Acc:NP_498060]R144.5 [Source:RefSeq_peptide;Acc:NP_498060] BY ORTHOLOGY TO:R144.5
17.2413 -19.26 0.0014584 1300 6 1 5 [+] picture button
CBG01693 ENSCBRT00000005573 M01H9.4 [Source:RefSeq_peptide;Acc:NP_500577]M01H9.4 [Source:RefSeq_peptide;Acc:NP_500577] BY ORTHOLOGY TO:M01H9.4
19.7324 -33.76 0.00148757 1300 1 1 1 [+] picture button
CBG21720 ENSCBRT00000004567 rap1 andrap1 and BY ORTHOLOGY TO:AAEL009377-RA
16.7213 -21 0.00159728 1300 4 1 3 [+] picture button
CBG05390 ENSCBRT00000004629 C01B10.9 [Source:RefSeq_peptide;Acc:NP_501023]C01B10.9 [Source:RefSeq_peptide;Acc:NP_501023] BY ORTHOLOGY TO:C01B10.9
16.941 -19.73 0.00161487 1300 3 2 4 [+] picture button
CBG18547 ENSCBRT00000010680 Y95B8A.11 [Source:RefSeq_peptide;Acc:NP_490789]Y95B8A.11 [Source:RefSeq_peptide;Acc:NP_490789] BY ORTHOLOGY TO:Y95B8A.11
16.9032 -19.4 0.00206488 1300 5 1 6 [+] picture button
CBG05090 ENSCBRT00000010312 W04C9.3 [Source:RefSeq_peptide;Acc:NP_490736]W04C9.3 [Source:RefSeq_peptide;Acc:NP_490736] BY ORTHOLOGY TO:W04C9.3
18.7718 -26.87 0.00224534 1300 2 2 3 [+] picture button
CBG13523 ENSCBRT00000009347 ham-1 encodes a novel protein with a winged helix DNA-binding motif. ham-1 is required for the asymmetric divisions of several neuroblasts in the developing embryo and may influence their spindle position. ham-1 mutations also exhibit HSN motor neuron migration defects. HAM-1 interacts with itself in a yeast two-hybrid screen and observations suggest that its multimerization is required for its proper localization. HAM-1 is cytoplasmic and is asymmetrically distributed to the posterior of the HSNPHB neuroblast. [Source: WormBase]ham-1 encodes a novel protein with a winged helix DNA-binding motif. ham-1 is required for the asymmetric divisions of several neuroblasts in the developing embryo and may influence their spindle position. ham-1 mutations also exhibit HSN motor neuron migration defects. HAM-1 interacts with itself in a yeast two-hybrid screen and observations suggest that its multimerization is required for its proper localization. HAM-1 is cytoplasmic and is asymmetrically distributed to the posterior of the HSNPHB neuroblast. [Source: WormBase] BY ORTHOLOGY TO:F53B2.6
16.5658 -13.16 0.00253602 1300 4 1 3 [+] picture button
CBG08977 ENSCBRT00000008498 The F56D2.6 gene encodes a DEAH helicase orthologous to the Drosophila CG11107, the human DDX15, and the S. cerevisiae PRP43 proteins. [Source: WormBase]The F56D2.6 gene encodes a DEAH helicase orthologous to the Drosophila CG11107, the human DDX15, and the S. cerevisiae PRP43 proteins. [Source: WormBase] BY ORTHOLOGY TO:F56D2.6a
16.2717 -14.92 0.00272264 1300 3 1 2 [+] picture button
CBG10272 ENSCBRT00000009537 T21B4.2 [Source:RefSeq_peptide;Acc:NP_496665]T21B4.2 [Source:RefSeq_peptide;Acc:NP_496665] BY ORTHOLOGY TO:T21B4.2
17.3119 -17.35 0.0035478 1300 4 1 3 [+] picture button
CBG03930 ENSCBRT00000010000 Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96) (PHS) (4-alpha- hydroxy-tetrahydropterin dehydratase) (Phenylalanine hydroxylase- stimulating protein) (Pterin carbinolamine dehydratase) (PCD) (Dimerization cofactor of hepatocyte nuclear factor 1-al [Source:Uniprot/SWISSPROT;Acc:P61457]Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96) (PHS) (4-alpha- hydroxy-tetrahydropterin dehydratase) (Phenylalanine hydroxylase- stimulating protein) (Pterin carbinolamine dehydratase) (PCD) (Dimerization cofactor of hepatocyte nuclear factor 1-al [Source:Uniprot/SWISSPROT;Acc:P61457] BY ORTHOLOGY TO:ENSORLT00000017583
16.4597 -21.92 0.00409176 1300 8 1 5 [+] picture button
CBG03075 ENSCBRT00000007000 WD repeat protein 18. [Source:Uniprot/SWISSPROT;Acc:Q9BV38]WD repeat protein 18. [Source:Uniprot/SWISSPROT;Acc:Q9BV38] BY ORTHOLOGY TO:ENST00000251289
16.4217 -22.26 0.00427436 1300 3 1 6 [+] picture button
CBG04600 ENSCBRT00000010489 R02D5.3 [Source:RefSeq_peptide;Acc:NP_506593]R02D5.3 [Source:RefSeq_peptide;Acc:NP_506593] BY ORTHOLOGY TO:R02D5.3
17.0576 -19.89 0.00507982 1300 5 1 6 [+] picture button
CBG04562 ENSCBRT00000010462 C47E8.3 [Source:RefSeq_peptide;Acc:NP_506624]C47E8.3 [Source:RefSeq_peptide;Acc:NP_506624] BY ORTHOLOGY TO:C47E8.3
17.9528 -22.52 0.00577259 1300 3 2 3 [+] picture button
CBG11169 ENSCBRT00000014449 C44B7.3 [Source:RefSeq_peptide;Acc:NP_495402]C44B7.3 [Source:RefSeq_peptide;Acc:NP_495402] BY ORTHOLOGY TO:C44B7.3
16.0986 -18.23 0.00621313 1300 3 1 3 [+] picture button
CBG01057 ENSCBRT00000002303 TAF (TBP-associated transcription factor) family member (taf-8) [Source:RefSeq_peptide;Acc:NP_001022513]TAF (TBP-associated transcription factor) family member (taf-8) [Source:RefSeq_peptide;Acc:NP_001022513] BY ORTHOLOGY TO:ZK1320.12a
16.0502 -19.82 0.00685957 1300 7 2 8 [+] picture button
CBG17724 ENSCBRT00000000169 Protein sidekick homolog precursor (Neuronal IgCAM protein 4). [Source:Uniprot/SWISSPROT;Acc:Q9N3X8]Protein sidekick homolog precursor (Neuronal IgCAM protein 4). [Source:Uniprot/SWISSPROT;Acc:Q9N3X8] BY ORTHOLOGY TO:Y42H9B.2
16.0747 -23.24 0.00754423 1300 5 2 9 [+] picture button
CBG05270 ENSCBRT00000003872 Nuclear Hormone Receptor family member (nhr-32) [Source:RefSeq_peptide;Acc:NP_510201]Nuclear Hormone Receptor family member (nhr-32) [Source:RefSeq_peptide;Acc:NP_510201] BY ORTHOLOGY TO:K08H2.8
16.1012 -18.14 0.00758997 1300 5 2 10 [+] picture button
CBG14561 ENSCBRT00000003356 T07F12.3 [Source:RefSeq_peptide;Acc:NP_508830]T07F12.3 [Source:RefSeq_peptide;Acc:NP_508830] BY ORTHOLOGY TO:T07F12.3
16.0279 -16.87 0.00761307 1300 2 1 2 [+] picture button
CBG17879 ENSCBRT00000000428 K10C9.4 [Source:RefSeq_peptide;Acc:NP_503368]K10C9.4 [Source:RefSeq_peptide;Acc:NP_503368] BY ORTHOLOGY TO:K10C9.4
18.2341 -19.88 0.00785755 1300 4 1 4 [+] picture button
CBG03676 ENSCBRT00000008740 NOT-Like (yeast CCR4/NOT complex component) family member (ntl-2) [Source:RefSeq_peptide;Acc:NP_001040726]NOT-Like (yeast CCR4/NOT complex component) family member (ntl-2) [Source:RefSeq_peptide;Acc:NP_001040726] BY ORTHOLOGY TO:B0286.4b
18.1846 -21.98 0.0082992 1300 4 1 6 [+] picture button
CBG05700 ENSCBRT00000009216 Hepatocyte nuclear factor 6 (HNF-6) (One cut domain family member 1). [Source:Uniprot/SWISSPROT;Acc:P70512]Hepatocyte nuclear factor 6 (HNF-6) (One cut domain family member 1). [Source:Uniprot/SWISSPROT;Acc:P70512] BY ORTHOLOGY TO:ENSRNOT00000010738
15.9863 -12.53 0.00864375 1300 6 1 8 [+] picture button
CBG12920 ENSCBRT00000013742 Y51A2D.5 [Source:RefSeq_peptide;Acc:NP_507624]Y51A2D.5 [Source:RefSeq_peptide;Acc:NP_507624] BY ORTHOLOGY TO:Y51A2D.5
16.727 -16.92 0.00864384 1300 2 2 2 [+] picture button
CBG09833 ENSCBRT00000008011 LEThal family member (let-805) [Source:RefSeq_peptide;Acc:NP_001022641]LEThal family member (let-805) [Source:RefSeq_peptide;Acc:NP_001022641] BY ORTHOLOGY TO:H19M22.2c
17.437 -25.04 0.00885885 1300 5 2 7 [+] picture button
CBG02918 ENSCBRT00000006136 Probable diphthine synthase (EC 2.1.1.98) (Diphthamide biosynthesis methyltransferase). [Source:Uniprot/SWISSPROT;Acc:Q9H2P9]Probable diphthine synthase (EC 2.1.1.98) (Diphthamide biosynthesis methyltransferase). [Source:Uniprot/SWISSPROT;Acc:Q9H2P9] BY ORTHOLOGY TO:SINFRUT00000177686
16.0896 -21.2 0.00889513 1300 3 1 3 [+] picture button
CBG20967 ENSCBRT00000000588 Y57A10C.10 [Source:RefSeq_peptide;Acc:NP_496643]Y57A10C.10 [Source:RefSeq_peptide;Acc:NP_496643] BY ORTHOLOGY TO:Y57A10C.10
16.1138 -12.83 0.00954175 1300 1 1 1 [+] picture button
CBG16832 ENSCBRT00000012756 NOT ANNOTATED
15.9523 -24.21 0.00981839 1300 3 2 3 [+] picture button
CBG12994 ENSCBRT00000012945 ZK1290.11 [Source:RefSeq_peptide;Acc:NP_495586]ZK1290.11 [Source:RefSeq_peptide;Acc:NP_495586] BY ORTHOLOGY TO:ZK1290.11
16.6522 -22.43 0.0105848 1300 3 2 4 [+] picture button
CBG19685 ENSCBRT00000000073 Temporarily Assigned Gene name family member (tag-200) [Source:RefSeq_peptide;Acc:NP_498425]Temporarily Assigned Gene name family member (tag-200) [Source:RefSeq_peptide;Acc:NP_498425] BY ORTHOLOGY TO:T26A5.1
17.8073 -28.06 0.0125854 1300 1 1 2 [+] picture button
CBG04682 ENSCBRT00000010541 Y47G6A.25 [Source:RefSeq_peptide;Acc:NP_491185]Y47G6A.25 [Source:RefSeq_peptide;Acc:NP_491185] BY ORTHOLOGY TO:Y47G6A.25
17.7879 -27.22 0.0128573 1300 4 1 3 [+] picture button
CBG04012 ENSCBRT00000009936 B0207.1 [Source:RefSeq_peptide;Acc:NP_491722]B0207.1 [Source:RefSeq_peptide;Acc:NP_491722] BY ORTHOLOGY TO:B0207.1
17.6679 -27.22 0.0146701 1300 7 1 6 [+] picture button
CBG13622 ENSCBRT00000002337 W04A8.1 encodes a protein weakly similar to human microcephalin (MCPH1. OMIM:607117, mutated in primary microcephaly). while their primary sequence similarity is very subtle (only being detectable with psi-BLAST on NCBI-nr, using C. briggsae CBG13622 as a query sequence), both W04A8.1 and microcephalin has similar ordering of BRCT domains (one N-terminal, two C-terminal). W04A8.1 has no obvious function in mass RNAi screens. [Source: WormBase]W04A8.1 encodes a protein weakly similar to human microcephalin (MCPH1. OMIM:607117, mutated in primary microcephaly). while their primary sequence similarity is very subtle (only being detectable with psi-BLAST on NCBI-nr, using C. briggsae CBG13622 as a query sequence), both W04A8.1 and microcephalin has similar ordering of BRCT domains (one N-terminal, two C-terminal). W04A8.1 has no obvious function in mass RNAi screens. [Source: WormBase] BY ORTHOLOGY TO:W04A8.1
17.6595 -18.64 0.0148062 1300 1 1 1 [+] picture button
CBG03194 ENSCBRT00000006879 HEAT-like repeat-containing protein isoform 1 [Source:RefSeq_peptide;Acc:NP_478144]HEAT-like repeat-containing protein isoform 1 [Source:RefSeq_peptide;Acc:NP_478144] BY ORTHOLOGY TO:ENSMODT00000002938
17.6385 -21.48 0.0151528 1300 2 1 2 [+] picture button
CBG17593 ENSCBRT00000002140 T05A10.3 [Source:RefSeq_peptide;Acc:NP_509801]T05A10.3 [Source:RefSeq_peptide;Acc:NP_509801] BY ORTHOLOGY TO:T05A10.3
17.558 -28.87 0.0165516 1300 3 1 3 [+] picture button
CBG09017 ENSCBRT00000008452 ZK328.6 [Source:RefSeq_peptide;Acc:NP_498314]ZK328.6 [Source:RefSeq_peptide;Acc:NP_498314] BY ORTHOLOGY TO:ZK328.6
17.4459 -14.61 0.0187137 1300 1 1 1 [+] picture button
CBG15134 ENSCBRT00000010293 clp-4 encodes a large calpain subunit that is homologous to Drosophila CalpainB and the mammalian muscle-specific Calpain 3 proteins (OMIM:114240, mutations are associated with limb-girdle muscular dystrophy). by homology, CLP-4 is predicted to function as a nonlysosomal, calcium-dependent, cysteine protease that is involved in intracellular proteolysis and peptidolysis. however, as loss of clp-4 activity via RNA-mediated interference (RNAi) does not result in any obvious abnormalities, the precise role of CLP-4 in C. elegans development and/or behavior is not yet known. [Source: WormBase]clp-4 encodes a large calpain subunit that is homologous to Drosophila CalpainB and the mammalian muscle-specific Calpain 3 proteins (OMIM:114240, mutations are associated with limb-girdle muscular dystrophy). by homology, CLP-4 is predicted to function as a nonlysosomal, calcium-dependent, cysteine protease that is involved in intracellular proteolysis and peptidolysis. however, as loss of clp-4 activity via RNA-mediated interference (RNAi) does not result in any obvious abnormalities, the precise role of CLP-4 in C. elegans development and/or behavior is not yet known. [Source: WormBase] BY ORTHOLOGY TO:Y39A3CL.5a
17.4449 -25.73 0.0187351 1300 3 1 5 [+] picture button
CBG09272 ENSCBRT00000006285 C10F3.1 [Source:RefSeq_peptide;Acc:NP_504556]C10F3.1 [Source:RefSeq_peptide;Acc:NP_504556] BY ORTHOLOGY TO:C10F3.1
17.4326 -26.02 0.0189872 1300 4 1 6 [+] picture button
CBG05555 ENSCBRT00000005373 CDNA FLJ14677 fis, clone NT2RP2004095. [Source:Uniprot/SPTREMBL;Acc:Q96SS0]CDNA FLJ14677 fis, clone NT2RP2004095. [Source:Uniprot/SPTREMBL;Acc:Q96SS0] BY ORTHOLOGY TO:ENSDART00000087841
17.3296 -17.62 0.0212491 1300 3 1 5 [+] picture button
CBG11023 ENSCBRT00000001170 synaptogyrin CG10808-PA [Source:RefSeq_peptide;Acc:NP_610908]synaptogyrin CG10808-PA [Source:RefSeq_peptide;Acc:NP_610908] BY ORTHOLOGY TO:CG10808-RA
17.3071 -27.39 0.0217765 1300 1 1 2 [+] picture button
CBG19952 ENSCBRT00000002458 Transmembrane protein 85 (Cell proliferation-inducing gene 17 protein). [Source:Uniprot/SWISSPROT;Acc:Q5J8M3]Transmembrane protein 85 (Cell proliferation-inducing gene 17 protein). [Source:Uniprot/SWISSPROT;Acc:Q5J8M3] BY ORTHOLOGY TO:ENSOANT00000024743
17.3047 -20.53 0.0218336 1300 4 1 5 [+] picture button
ENSCBRT00000011384 C25D7.10 [Source:RefSeq_peptide;Acc:NP_506710]C25D7.10 [Source:RefSeq_peptide;Acc:NP_506710] BY ORTHOLOGY TO:C25D7.10
17.2721 -23.36 0.0226236 1300 3 1 3 [+] picture button
CBG20501 ENSCBRT00000003906 DIP2 disco-interacting protein 2 homolog B [Source:RefSeq_peptide;Acc:NP_775873]DIP2 disco-interacting protein 2 homolog B [Source:RefSeq_peptide;Acc:NP_775873] BY ORTHOLOGY TO:ENSGALT00000009909
17.2624 -19.74 0.0228658 1300 5 1 6 [+] picture button
CBG19634 ENSCBRT00000001826 Zinc finger Ran-binding domain-containing protein 2 (Zinc finger protein 265) (Zinc finger, splicing). [Source:Uniprot/SWISSPROT;Acc:O95218]Zinc finger Ran-binding domain-containing protein 2 (Zinc finger protein 265) (Zinc finger, splicing). [Source:Uniprot/SWISSPROT;Acc:O95218] BY ORTHOLOGY TO:ENSGACT00000012522
17.2393 -24.79 0.0234485 1300 3 1 3 [+] picture button
CBG19613 ENSCBRT00000001798 K08A2.4 [Source:RefSeq_peptide;Acc:NP_494417]K08A2.4 [Source:RefSeq_peptide;Acc:NP_494417] BY ORTHOLOGY TO:K08A2.4
17.2298 -25.68 0.0236919 1300 4 1 5 [+] picture button
CBG09353 ENSCBRT00000006373 acy-4 encodes an adenylate cyclase most similar to vertebrate type V and type VI adenylate cyclases. by homology, ACY-4 is a predicted plasma membrane protein that catalyzes the conversion of ATP to cyclic AMP, a key second messenger in intracellular signaling. as loss of acy-4 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of ACY-4 in C. elegans development and/or behavior is not yet known. [Source: WormBase]acy-4 encodes an adenylate cyclase most similar to vertebrate type V and type VI adenylate cyclases. by homology, ACY-4 is a predicted plasma membrane protein that catalyzes the conversion of ATP to cyclic AMP, a key second messenger in intracellular signaling. as loss of acy-4 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of ACY-4 in C. elegans development and/or behavior is not yet known. [Source: WormBase] BY ORTHOLOGY TO:T01C2.1
17.1971 -23.95 0.0245488 1300 4 2 5 [+] picture button
CBG04646 ENSCBRT00000010534 F47B8.3 [Source:RefSeq_peptide;Acc:NP_506549]F47B8.3 [Source:RefSeq_peptide;Acc:NP_506549] BY ORTHOLOGY TO:F47B8.3
17.1877 -21.65 0.0248013 1300 9 1 7 [+] picture button
CBG05907 ENSCBRT00000008993 F49E8.2 [Source:RefSeq_peptide;Acc:NP_501222]F49E8.2 [Source:RefSeq_peptide;Acc:NP_501222] BY ORTHOLOGY TO:F49E8.2
17.1463 -22.15 0.0259436 1300 4 1 5 [+] picture button
CBG14248 ENSCBRT00000002691 R11G1.6b [Source:RefSeq_peptide;Acc:NP_741753]R11G1.6b [Source:RefSeq_peptide;Acc:NP_741753] BY ORTHOLOGY TO:R11G1.6b
17.1218 -25.31 0.0266418 1300 2 2 2 [+] picture button
CBG16786 ENSCBRT00000012850 tubulin, beta 3 [Source:MarkerSymbol;Acc:MGI:107813]tubulin, beta 3 [Source:MarkerSymbol;Acc:MGI:107813] BY ORTHOLOGY TO:ENSMUST00000071134
17.1018 -26.12 0.0272253 1300 6 1 7 [+] picture button
CBG22998 ENSCBRT00000008830 Y39E4B.10 [Source:RefSeq_peptide;Acc:NP_499716]Y39E4B.10 [Source:RefSeq_peptide;Acc:NP_499716] BY ORTHOLOGY TO:Y39E4B.10
17.0669 -12.94 0.0282755 1300 4 2 4 [+] picture button

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