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Target Listing


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Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cbr-miR-259

189 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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CBG18269 ENSCBRT00000001671 R08H2.10 [Source:RefSeq_peptide;Acc:NP_506815]R08H2.10 [Source:RefSeq_peptide;Acc:NP_506815] BY ORTHOLOGY TO:R08H2.10
15.4738 -12.68 0.0000472461 1300 4 1 4 [+] picture button
CBG18966 ENSCBRT00000014132 K04A8.5 [Source:RefSeq_peptide;Acc:NP_504662]K04A8.5 [Source:RefSeq_peptide;Acc:NP_504662] BY ORTHOLOGY TO:K04A8.5
17.9704 -20.42 0.0000536399 1300 4 2 4 [+] picture button
CBG12065 ENSCBRT00000011660 RIKEN cDNA 4921504I05 gene [Source:MarkerSymbol;Acc:MGI:1913957]RIKEN cDNA 4921504I05 gene [Source:MarkerSymbol;Acc:MGI:1913957] BY ORTHOLOGY TO:ENSMUST00000068235
16.6703 -12.71 0.000118543 1300 8 2 10 [+] picture button
CBG07562 ENSCBRT00000011155 CG3585-PA [Source:RefSeq_peptide;Acc:NP_572302]CG3585-PA [Source:RefSeq_peptide;Acc:NP_572302] BY ORTHOLOGY TO:CG3585-RA
15.7875 -12.22 0.000346439 1300 5 1 5 [+] picture button
CBG05467 ENSCBRT00000004779 MIF (macrophage migration inhibitory factor) related family member (mif-4) [Source:RefSeq_peptide;Acc:NP_500968]MIF (macrophage migration inhibitory factor) related family member (mif-4) [Source:RefSeq_peptide;Acc:NP_500968] BY ORTHOLOGY TO:Y73B6BL.13
16.6541 -13.06 0.000600761 1300 4 1 4 [+] picture button
CBG03849 ENSCBRT00000008688 Zinc metalloproteinase nas-5 precursor (EC 3.4.24.21) (Nematode astacin 5). [Source:Uniprot/SWISSPROT;Acc:P91828]Zinc metalloproteinase nas-5 precursor (EC 3.4.24.21) (Nematode astacin 5). [Source:Uniprot/SWISSPROT;Acc:P91828] BY ORTHOLOGY TO:T23H4.3
17.2024 -18.22 0.000729132 1300 6 1 5 [+] picture button
CBG04432 ENSCBRT00000008924 R09H10.5 [Source:RefSeq_peptide;Acc:NP_501964]R09H10.5 [Source:RefSeq_peptide;Acc:NP_501964] BY ORTHOLOGY TO:R09H10.5
16.6838 -14.81 0.000773711 1300 5 1 4 [+] picture button
CBG24281 ENSCBRT00000007809 Nuclear migration protein nudC (Nuclear distribution protein C homolog). [Source:Uniprot/SWISSPROT;Acc:Q9Y266]Nuclear migration protein nudC (Nuclear distribution protein C homolog). [Source:Uniprot/SWISSPROT;Acc:Q9Y266] BY ORTHOLOGY TO:ENSMODT00000018323
16.3338 -14.55 0.000852232 1300 6 1 4 [+] picture button
CBG00083 ENSCBRT00000001582 pgp-13 encodes a member of the ABC transporter family with high similarity to the vertebrate MDR (multidrug resistance) family. PGP-13 is predicted to function as a transmembrane protein that couples energy to transport of various molecules across membranes, but as loss of pgp-13 activity via large-scale RNAi screens does not result in any obvious defects, the precise role of pgp-13 in C. elegans development and/or behavior is not yet known. pgp-13 promoter-gfp fusion proteins are expressed in larvae and adults in the posterior intestine and the amphids. [Source: WormBase]pgp-13 encodes a member of the ABC transporter family with high similarity to the vertebrate MDR (multidrug resistance) family. PGP-13 is predicted to function as a transmembrane protein that couples energy to transport of various molecules across membranes, but as loss of pgp-13 activity via large-scale RNAi screens does not result in any obvious defects, the precise role of pgp-13 in C. elegans development and/or behavior is not yet known. pgp-13 promoter-gfp fusion proteins are expressed in larvae and adults in the posterior intestine and the amphids. [Source: WormBase] BY ORTHOLOGY TO:F22E10.2
16.1313 -12.09 0.00116273 1300 7 1 10 [+] picture button
CBG17974 ENSCBRT00000003012 F26A1.9 [Source:RefSeq_peptide;Acc:NP_497998]F26A1.9 [Source:RefSeq_peptide;Acc:NP_497998] BY ORTHOLOGY TO:F26A1.9
16.2512 -18.35 0.00147597 1300 2 1 1 [+] picture button
CBG02761 ENSCBRT00000007331 F58G1.6 [Source:RefSeq_peptide;Acc:NP_496757]F58G1.6 [Source:RefSeq_peptide;Acc:NP_496757] BY ORTHOLOGY TO:F58G1.6
16.2194 -22.46 0.00157768 1300 6 1 5 [+] picture button
CBG09057 ENSCBRT00000008382 F01F1.1a [Source:RefSeq_peptide;Acc:NP_498274]F01F1.1a [Source:RefSeq_peptide;Acc:NP_498274] BY ORTHOLOGY TO:F01F1.1c
16.6428 -15.65 0.00157864 1300 4 1 3 [+] picture button
CBG19270 ENSCBRT00000013470 trafficking protein particle complex 4 [Source:RefSeq_peptide;Acc:NP_001003708]trafficking protein particle complex 4 [Source:RefSeq_peptide;Acc:NP_001003708] BY ORTHOLOGY TO:ENSRNOT00000016145
16.2769 -17.18 0.00207742 1300 2 1 1 [+] picture button
CBG05619 ENSCBRT00000005409 Y38H6A.1 [Source:RefSeq_peptide;Acc:NP_507919]Y38H6A.1 [Source:RefSeq_peptide;Acc:NP_507919] BY ORTHOLOGY TO:Y38H6A.1
15.6638 -13.32 0.00215786 1300 3 1 2 [+] picture button
CBG12451 ENSCBRT00000013182 mel-26 encodes a MATH and BTB/POZ domain-containing protein that functions as a novel substrate-specific adaptor of the CUL-3-containing E3 ubiquitin ligase. MEL-26 is required maternally for formation of mitotic spindles in the early embryo, and as a component of a ubiquitin ligase complex, for degradation of the microtubule-severing protein MEI-1 at the meiosis to mitosis transition. MEL-26 is also required maternally for embryonic morphogenesis. since MEL-26 contains a meprin-associated Traf homology (MATH) domain, it might be involved in apoptosis. [Source: WormBase]mel-26 encodes a MATH and BTB/POZ domain-containing protein that functions as a novel substrate-specific adaptor of the CUL-3-containing E3 ubiquitin ligase. MEL-26 is required maternally for formation of mitotic spindles in the early embryo, and as a component of a ubiquitin ligase complex, for degradation of the microtubule-severing protein MEI-1 at the meiosis to mitosis transition. MEL-26 is also required maternally for embryonic morphogenesis. since MEL-26 contains a meprin-associated Traf homology (MATH) domain, it might be involved in apoptosis. [Source: WormBase] BY ORTHOLOGY TO:ZK858.4
15.5603 -11.92 0.00218914 1300 3 1 4 [+] picture button
CBG13899 ENSCBRT00000013651 Nuclear Hormone Receptor family member (nhr-277) [Source:RefSeq_peptide;Acc:NP_500250]Nuclear Hormone Receptor family member (nhr-277) [Source:RefSeq_peptide;Acc:NP_500250] BY ORTHOLOGY TO:Y94H6A.1
16.0222 -11.91 0.00232735 1300 4 1 3 [+] picture button
CBG17221 ENSCBRT00000000482 EF-hand domain-containing protein 1. [Source:Uniprot/SWISSPROT;Acc:Q5JVL4]EF-hand domain-containing protein 1. [Source:Uniprot/SWISSPROT;Acc:Q5JVL4] BY ORTHOLOGY TO:ENSORLT00000016269
15.7617 -18.5 0.00239787 1300 4 1 5 [+] picture button
CBG21105 ENSCBRT00000000855 nfm-1 encodes a homolog of human merlin/schwannomin (NF2), which when mutated leads to neurofibromatosis, type 2 (OMIM:101000). at the same time, it is also homologous to the ERM family of cytoskeletal linkers with approximately equal similarity to ezrin, radixin and moesin. [Source: WormBase]nfm-1 encodes a homolog of human merlin/schwannomin (NF2), which when mutated leads to neurofibromatosis, type 2 (OMIM:101000). at the same time, it is also homologous to the ERM family of cytoskeletal linkers with approximately equal similarity to ezrin, radixin and moesin. [Source: WormBase] BY ORTHOLOGY TO:F42A10.2b
17.3949 -12.32 0.00255761 1300 8 1 5 [+] picture button
ENSCBRT00000009654 W02H5.1 [Source:RefSeq_peptide;Acc:NP_503723]W02H5.1 [Source:RefSeq_peptide;Acc:NP_503723] BY ORTHOLOGY TO:W02H5.1
15.4089 -13.02 0.0029185 1300 5 1 5 [+] picture button
CBG02048 ENSCBRT00000005921 F55F1.3 [Source:RefSeq_peptide;Acc:NP_741735]F55F1.3 [Source:RefSeq_peptide;Acc:NP_741735] BY ORTHOLOGY TO:F55F1.3
15.4868 -14.64 0.00365313 1300 5 1 4 [+] picture button
CBG12907 ENSCBRT00000013751 The ned-8 gene encodes a ubiquitin-like protein that is required for both embryogenesis and terminal hypodermal differentiation. [Source: WormBase]The ned-8 gene encodes a ubiquitin-like protein that is required for both embryogenesis and terminal hypodermal differentiation. [Source: WormBase] BY ORTHOLOGY TO:F45H11.2
15.4986 -7.35 0.00366697 1300 4 1 4 [+] picture button
CBG04603 ENSCBRT00000010493 F08H9.5 [Source:RefSeq_peptide;Acc:NP_506588]F08H9.5 [Source:RefSeq_peptide;Acc:NP_506588] BY ORTHOLOGY TO:F08H9.5
16.0554 -11.05 0.00367514 1300 6 1 5 [+] picture button
CBG08144 ENSCBRT00000003743 F13C5.2 [Source:RefSeq_peptide;Acc:NP_508124]F13C5.2 [Source:RefSeq_peptide;Acc:NP_508124] BY ORTHOLOGY TO:F13C5.2
15.4773 -18.4 0.00371763 1300 6 1 4 [+] picture button
CBG15311 ENSCBRT00000009583 Y76A2B.3 [Source:RefSeq_peptide;Acc:NP_499799]Y76A2B.3 [Source:RefSeq_peptide;Acc:NP_499799] BY ORTHOLOGY TO:Y76A2B.3
15.2722 -24.4 0.00378274 1300 3 1 2 [+] picture button
CBG06810 ENSCBRT00000007439 Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial precursor (EC 6.4.1.4) (3-methylcrotonyl-CoA carboxylase 2) (MCCase subunit beta) (3-methylcrotonyl-CoA:carbon dioxide ligase subunit beta) (3- methylcrotonyl-CoA carboxylase non-biotin-containing [Source:Uniprot/SWISSPROT;Acc:Q9HCC0]Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial precursor (EC 6.4.1.4) (3-methylcrotonyl-CoA carboxylase 2) (MCCase subunit beta) (3-methylcrotonyl-CoA:carbon dioxide ligase subunit beta) (3- methylcrotonyl-CoA carboxylase non-biotin-containing [Source:Uniprot/SWISSPROT;Acc:Q9HCC0] BY ORTHOLOGY TO:ENSMMUT00000021284
15.5022 -13.11 0.003954 1300 4 1 4 [+] picture button
CBG07073 ENSCBRT00000012433 MoLTing defective family member (mlt-8) [Source:RefSeq_peptide;Acc:NP_493759]MoLTing defective family member (mlt-8) [Source:RefSeq_peptide;Acc:NP_493759] BY ORTHOLOGY TO:W08F4.6
15.3456 -8.81 0.00396891 1300 3 1 2 [+] picture button
CBG21859 ENSCBRT00000004868 Y73C8B.3 [Source:RefSeq_peptide;Acc:NP_503878]Y73C8B.3 [Source:RefSeq_peptide;Acc:NP_503878] BY ORTHOLOGY TO:Y73C8B.3
18.1749 -11.25 0.00435616 1300 3 1 3 [+] picture button
CBG12430 ENSCBRT00000013169 W06D4.2 [Source:RefSeq_peptide;Acc:NP_492434]W06D4.2 [Source:RefSeq_peptide;Acc:NP_492434] BY ORTHOLOGY TO:W06D4.2
15.2907 -15.43 0.00439523 1300 4 1 4 [+] picture button
CBG17302 ENSCBRT00000001220 mig-2 encodes a member of the Rho family of GTP-binding proteins that affects the migration of Q neuroblasts, HSN cells, and CAN cells as well as axon outgrowth and guidance. it is expressed in early embryos and expressed in adults in the vulva, distal tip cells of the gonad, and the sex myoblasts and their descendants. [Source: WormBase]mig-2 encodes a member of the Rho family of GTP-binding proteins that affects the migration of Q neuroblasts, HSN cells, and CAN cells as well as axon outgrowth and guidance. it is expressed in early embryos and expressed in adults in the vulva, distal tip cells of the gonad, and the sex myoblasts and their descendants. [Source: WormBase] BY ORTHOLOGY TO:C35C5.4
16.0786 -11.15 0.00445447 1300 4 6 4 [+] picture button
CBG23516 ENSCBRT00000011612 Legumain precursor (EC 3.4.22.34) (Asparaginyl endopeptidase) (Protease, cysteine 1). [Source:Uniprot/SWISSPROT;Acc:Q99538]Legumain precursor (EC 3.4.22.34) (Asparaginyl endopeptidase) (Protease, cysteine 1). [Source:Uniprot/SWISSPROT;Acc:Q99538] BY ORTHOLOGY TO:ENSGALT00000017577
18.152 -21.26 0.0044592 1300 3 1 3 [+] picture button
CBG01283 ENSCBRT00000005156 Serpentine Receptor, class X family member (srx-68) [Source:RefSeq_peptide;Acc:NP_504082]Serpentine Receptor, class X family member (srx-68) [Source:RefSeq_peptide;Acc:NP_504082] BY ORTHOLOGY TO:K07C6.11
15.8244 -8.46 0.00455237 1300 4 2 3 [+] picture button
CBG19910 ENSCBRT00000002438 C39H7.4 [Source:RefSeq_peptide;Acc:NP_500834]C39H7.4 [Source:RefSeq_peptide;Acc:NP_500834] BY ORTHOLOGY TO:C39H7.4
17.9621 -19.91 0.00540898 1300 3 1 3 [+] picture button
CBG06670 ENSCBRT00000009688 chk-1 encodes a CHK1-like serine threonin protein kinase that affects fertility. [Source: WormBase]chk-1 encodes a CHK1-like serine threonin protein kinase that affects fertility. [Source: WormBase] BY ORTHOLOGY TO:Y39H10A.7a
15.2919 -13.2 0.00611888 1300 4 1 4 [+] picture button
CBG17594 ENSCBRT00000002142 clc-4 encodes a claudin homolog that may be required for normal cohesion of apical junctions in epithelia. CLC-4 is worm-specific, with obvious homologs only in C. elegans. claudins are integral membrane proteins with four transmembrane sequences that are found in mammalian tight junctions (TJs), induce TJs when transgenically expressed in cells normally lacking them, and can mediate the specific conductance of of specific ions (e.g., magnesium or calcium) through TJs while blocking the flow of water. [Source: WormBase]clc-4 encodes a claudin homolog that may be required for normal cohesion of apical junctions in epithelia. CLC-4 is worm-specific, with obvious homologs only in C. elegans. claudins are integral membrane proteins with four transmembrane sequences that are found in mammalian tight junctions (TJs), induce TJs when transgenically expressed in cells normally lacking them, and can mediate the specific conductance of of specific ions (e.g., magnesium or calcium) through TJs while blocking the flow of water. [Source: WormBase] BY ORTHOLOGY TO:T05A10.2
15.6756 -12.93 0.00637546 1300 2 1 2 [+] picture button
CBG22943 ENSCBRT00000008771 aco-2 encodes an aconitase homolog that is required for embryonic viability, fertility, locomotion, and vulval morphogenesis, and perhaps for normal lifespan. ACO-2 is predicted to be mitochondrial. [Source: WormBase]aco-2 encodes an aconitase homolog that is required for embryonic viability, fertility, locomotion, and vulval morphogenesis, and perhaps for normal lifespan. ACO-2 is predicted to be mitochondrial. [Source: WormBase] BY ORTHOLOGY TO:F54H12.1a
15.8039 -14.15 0.00675409 1300 3 1 3 [+] picture button
CBG23024 ENSCBRT00000008849 C45G9.9 [Source:RefSeq_peptide;Acc:NP_498074]C45G9.9 [Source:RefSeq_peptide;Acc:NP_498074] BY ORTHOLOGY TO:C45G9.9
17.6987 -20.04 0.00706753 1300 6 1 9 [+] picture button
CBG05116 ENSCBRT00000010296 ptr-21 encodes a nematode-specific member of the sterol sensing domain (SSD) proteins, distantly paralogous to Drosophila PATCHED (PTC) and human PTCH (OMIM:601309, mutated in basal cell nevus syndrome). PTR-21 is weakly required for normal molting from L4 to adult stages. PTR-21 is also required for normal growth to full size and locomotion. [Source: WormBase]ptr-21 encodes a nematode-specific member of the sterol sensing domain (SSD) proteins, distantly paralogous to Drosophila PATCHED (PTC) and human PTCH (OMIM:601309, mutated in basal cell nevus syndrome). PTR-21 is weakly required for normal molting from L4 to adult stages. PTR-21 is also required for normal growth to full size and locomotion. [Source: WormBase] BY ORTHOLOGY TO:Y65B4BR.3
17.6848 -11.03 0.00716782 1300 7 1 10 [+] picture button
CBG04996 ENSCBRT00000010099 W06G6.1 [Source:RefSeq_peptide;Acc:NP_507205]W06G6.1 [Source:RefSeq_peptide;Acc:NP_507205] BY ORTHOLOGY TO:W06G6.1
15.8362 -13.35 0.00720721 1300 1 1 1 [+] picture button
CBG19223 ENSCBRT00000013430 RIKEN cDNA 4931406C07 gene [Source:MarkerSymbol;Acc:MGI:1918234]RIKEN cDNA 4931406C07 gene [Source:MarkerSymbol;Acc:MGI:1918234] BY ORTHOLOGY TO:ENSMUST00000034414
17.6218 -16.72 0.00764096 1300 3 1 4 [+] picture button
CBG02473 ENSCBRT00000006511 C25H3.7b [Source:RefSeq_peptide;Acc:NP_740998]C25H3.7b [Source:RefSeq_peptide;Acc:NP_740998] BY ORTHOLOGY TO:C25H3.7a
15.3335 -13.95 0.00775392 1300 4 1 4 [+] picture button
CBG20764 ENSCBRT00000001357 This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins. its encoded protein also contains a Pfam-B45 motif of presently unknown function. [Source: WormBase]This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins. its encoded protein also contains a Pfam-B45 motif of presently unknown function. [Source: WormBase] BY ORTHOLOGY TO:C33F10.8
15.5659 -10.43 0.00775392 1300 2 1 2 [+] picture button
CBG10042 ENSCBRT00000007296 Rhomboid-related protein 1 (EC 3.4.21.105). [Source:Uniprot/SWISSPROT;Acc:Q19821]Rhomboid-related protein 1 (EC 3.4.21.105). [Source:Uniprot/SWISSPROT;Acc:Q19821] BY ORTHOLOGY TO:F26F4.3
15.1846 -14.65 0.00775392 1300 3 1 3 [+] picture button
CBG08137 ENSCBRT00000003732 defective PHArynx development family member (pha-2) [Source:RefSeq_peptide;Acc:NP_508131]defective PHArynx development family member (pha-2) [Source:RefSeq_peptide;Acc:NP_508131] BY ORTHOLOGY TO:M6.3
17.5586 -20.4 0.00814627 1300 4 1 4 [+] picture button
CBG15747 ENSCBRT00000012073 Y37D8A.3 [Source:RefSeq_peptide;Acc:NP_499669]Y37D8A.3 [Source:RefSeq_peptide;Acc:NP_499669] BY ORTHOLOGY TO:Y37D8A.3
15.2048 -12.1 0.00816403 1300 5 1 6 [+] picture button
CBG09952 ENSCBRT00000008116 ZK757.2 [Source:RefSeq_peptide;Acc:NP_499190]ZK757.2 [Source:RefSeq_peptide;Acc:NP_499190] BY ORTHOLOGY TO:ZK757.2
17.5042 -21.69 0.00860756 1300 4 1 4 [+] picture button
CBG04819 ENSCBRT00000010021 Nuclear Hormone Receptor family member (nhr-233) [Source:RefSeq_peptide;Acc:NP_507191]Nuclear Hormone Receptor family member (nhr-233) [Source:RefSeq_peptide;Acc:NP_507191] BY ORTHOLOGY TO:Y32B12B.6
15.0855 -11.57 0.00866147 1300 6 1 5 [+] picture button
CBG22282 ENSCBRT00000003574 Signal recognition particle 19 kDa protein (SRP19). [Source:Uniprot/SWISSPROT;Acc:P09132]Signal recognition particle 19 kDa protein (SRP19). [Source:Uniprot/SWISSPROT;Acc:P09132] BY ORTHOLOGY TO:ENST00000379648
15.1156 -7.01 0.00877288 1300 4 1 4 [+] picture button
CBG00864 ENSCBRT00000003967 growth arrest specific 1 [Source:MarkerSymbol;Acc:MGI:95655]growth arrest specific 1 [Source:MarkerSymbol;Acc:MGI:95655] BY ORTHOLOGY TO:ENSMUST00000065086
15.078 -10.55 0.00878166 1300 6 1 9 [+] picture button
CBG14241 ENSCBRT00000002683 C18B2.3 [Source:RefSeq_peptide;Acc:NP_508619]C18B2.3 [Source:RefSeq_peptide;Acc:NP_508619] BY ORTHOLOGY TO:C18B2.3
17.4794 -17.58 0.00882637 1300 5 1 5 [+] picture button
CBG02562 ENSCBRT00000007565 R12C12.9a [Source:RefSeq_peptide;Acc:NP_495203]R12C12.9a [Source:RefSeq_peptide;Acc:NP_495203] BY ORTHOLOGY TO:R12C12.9b
15.1962 -14.42 0.00910408 1300 7 2 5 [+] picture button

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