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Target Listing


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Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cbr-miR-250

188 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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CBG13230 ENSCBRT00000001093 Y41C4A.12b [Source:RefSeq_peptide;Acc:NP_871699]Y41C4A.12b [Source:RefSeq_peptide;Acc:NP_871699] BY ORTHOLOGY TO:Y41C4A.12b
16.0622 -16.72 0.0000147144 1300 6 1 8 [+] picture button
CBG10411 ENSCBRT00000007912 R08F11.7 [Source:RefSeq_peptide;Acc:NP_504048]R08F11.7 [Source:RefSeq_peptide;Acc:NP_504048] BY ORTHOLOGY TO:R08F11.7
16.2848 -20.78 0.000351691 1300 4 1 3 [+] picture button
CBG14716 ENSCBRT00000006789 T22B7.4 [Source:RefSeq_peptide;Acc:NP_508949]T22B7.4 [Source:RefSeq_peptide;Acc:NP_508949] BY ORTHOLOGY TO:T22B7.4
15.7504 -23.9 0.000475692 1300 5 1 4 [+] picture button
CBG08364 ENSCBRT00000013040 T07G12.5 [Source:RefSeq_peptide;Acc:NP_501947]T07G12.5 [Source:RefSeq_peptide;Acc:NP_501947] BY ORTHOLOGY TO:T07G12.5
15.203 -16.72 0.000804291 1300 2 1 1 [+] picture button
CBG20793 ENSCBRT00000001332 Y48C3A.11 [Source:RefSeq_peptide;Acc:NP_496818]Y48C3A.11 [Source:RefSeq_peptide;Acc:NP_496818] BY ORTHOLOGY TO:Y48C3A.11
15.3001 -17.39 0.00080583 1300 3 1 2 [+] picture button
CBG11315 ENSCBRT00000014394 C16D9.6 [Source:RefSeq_peptide;Acc:NP_505126]C16D9.6 [Source:RefSeq_peptide;Acc:NP_505126] BY ORTHOLOGY TO:C16D9.6
15.5719 -17.03 0.000881437 1300 2 2 8 [+] picture button
CBG05526 ENSCBRT00000004870 UDP-GlucuronosylTransferase family member (ugt-19) [Source:RefSeq_peptide;Acc:NP_500912]UDP-GlucuronosylTransferase family member (ugt-19) [Source:RefSeq_peptide;Acc:NP_500912] BY ORTHOLOGY TO:K08B4.3
15.1754 -18.22 0.0012714 1300 4 1 3 [+] picture button
CBG05410 ENSCBRT00000004706 Ufm1-specific protease 2 (EC 3.4.22.-) (UfSP2). [Source:Uniprot/SWISSPROT;Acc:Q7T347]Ufm1-specific protease 2 (EC 3.4.22.-) (UfSP2). [Source:Uniprot/SWISSPROT;Acc:Q7T347] BY ORTHOLOGY TO:ENSDART00000078848
15.203 -16.89 0.00158708 1300 4 1 4 [+] picture button
CBG07670 ENSCBRT00000010646 Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing alpha polypeptide (EC 2.7.1.154) (Phosphoinositide 3-Kinase-C2-alpha) (PtdIns-3-kinase C2 alpha) (PI3K-C2alpha). [Source:Uniprot/SWISSPROT;Acc:O00443]Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing alpha polypeptide (EC 2.7.1.154) (Phosphoinositide 3-Kinase-C2-alpha) (PtdIns-3-kinase C2 alpha) (PI3K-C2alpha). [Source:Uniprot/SWISSPROT;Acc:O00443] BY ORTHOLOGY TO:ENST00000265970
15.3583 -19.92 0.00166908 1300 2 1 5 [+] picture button
CBG14129 ENSCBRT00000002567 F52E4.5 [Source:RefSeq_peptide;Acc:NP_508527]F52E4.5 [Source:RefSeq_peptide;Acc:NP_508527] BY ORTHOLOGY TO:F52E4.5
16.1019 -21.22 0.00173259 1300 4 1 3 [+] picture button
CBG20945 ENSCBRT00000000617 Serpentine Receptor, class E (epsilon) family member (sre-51) [Source:RefSeq_peptide;Acc:NP_496614]Serpentine Receptor, class E (epsilon) family member (sre-51) [Source:RefSeq_peptide;Acc:NP_496614] BY ORTHOLOGY TO:C50E10.10
15.691 -16.09 0.00190105 1300 5 1 5 [+] picture button
CBG16044 ENSCBRT00000014266 F15G9.5 [Source:RefSeq_peptide;Acc:NP_509637]F15G9.5 [Source:RefSeq_peptide;Acc:NP_509637] BY ORTHOLOGY TO:F15G9.5
15.1388 -19.7 0.00201306 1300 3 2 5 [+] picture button
CBG17590 ENSCBRT00000002138 T05A10.6 [Source:RefSeq_peptide;Acc:NP_509804]T05A10.6 [Source:RefSeq_peptide;Acc:NP_509804] BY ORTHOLOGY TO:T05A10.6
14.955 -15.42 0.00262746 1300 5 1 5 [+] picture button
CBG12133 ENSCBRT00000013299 T08B1.6 [Source:RefSeq_peptide;Acc:NP_503540]T08B1.6 [Source:RefSeq_peptide;Acc:NP_503540] BY ORTHOLOGY TO:T08B1.6
15.2172 -16.18 0.00266914 1300 4 1 3 [+] picture button
CBG17511 ENSCBRT00000002058 clc-1 encodes a claudin homolog, closely similar to CLC-2, that is required for normal cohesion of apical junctions in epithelia. claudins are integral membrane proteins with four transmembrane sequences that are found in mammalian tight junctions (TJs), induce TJs when transgenically expressed in cells normally lacking them, and can mediate the specific conductance of of specific ions (e.g., magnesium or calcium) through TJs while blocking the flow of water. CLC-1 maintains the impermeability ('barrier function') of epithelia, since clc-1(RNAi) animals have abnormal permeability of the pharynx to dyes. clc-1 is expressed in spermatheca, pharynx, intestine, hypodermis, the excretory-secretory system, and the cell-cell junctions of the vulva. in pharyngeal cells, CLC-1 colocalizes with AJM-1 in long thin lines, parallel to the pharyngeal axis and lining the lumenal surface, that appear to correspond with apical intercellular junctions. [Source: WormBase]clc-1 encodes a claudin homolog, closely similar to CLC-2, that is required for normal cohesion of apical junctions in epithelia. claudins are integral membrane proteins with four transmembrane sequences that are found in mammalian tight junctions (TJs), induce TJs when transgenically expressed in cells normally lacking them, and can mediate the specific conductance of of specific ions (e.g., magnesium or calcium) through TJs while blocking the flow of water. CLC-1 maintains the impermeability ('barrier function') of epithelia, since clc-1(RNAi) animals have abnormal permeability of the pharynx to dyes. clc-1 is expressed in spermatheca, pharynx, intestine, hypodermis, the excretory-secretory system, and the cell-cell junctions of the vulva. in pharyngeal cells, CLC-1 colocalizes with AJM-1 in long thin lines, parallel to the pharyngeal axis and lining the lumenal surface, that appear to correspond with apical intercellular junctions. [Source: WormBase] BY ORTHOLOGY TO:C09F12.1
14.9106 -16.71 0.00287362 1300 2 1 2 [+] picture button
CBG14604 ENSCBRT00000003277 DNA-binding protein D-ETS-3. [Source:Uniprot/SWISSPROT;Acc:P29774]DNA-binding protein D-ETS-3. [Source:Uniprot/SWISSPROT;Acc:P29774] BY ORTHOLOGY TO:CG7018-RA
17.6314 -26.29 0.00311125 1300 5 1 6 [+] picture button
CBG16512 ENSCBRT00000014614 Ubiquitin conjugating enzyme 10 CG5788-PA [Source:RefSeq_peptide;Acc:NP_477414]Ubiquitin conjugating enzyme 10 CG5788-PA [Source:RefSeq_peptide;Acc:NP_477414] BY ORTHOLOGY TO:CG5788-RA
14.5208 -22.51 0.00388557 1300 3 1 2 [+] picture button
CBG01546 ENSCBRT00000005672 F42G8.7 [Source:RefSeq_peptide;Acc:NP_501357]F42G8.7 [Source:RefSeq_peptide;Acc:NP_501357] BY ORTHOLOGY TO:F42G8.7
14.6789 -21.31 0.00456708 1300 3 1 4 [+] picture button
CBG09560 ENSCBRT00000005938 Seven TM Receptor family member (str-182) [Source:RefSeq_peptide;Acc:NP_505631]Seven TM Receptor family member (str-182) [Source:RefSeq_peptide;Acc:NP_505631] BY ORTHOLOGY TO:C12D8.12
16.0909 -20.7 0.00461589 1300 4 1 5 [+] picture button
CBG08530 ENSCBRT00000002888 ZC116.3 is orthologous to the human gene CUBILIN (CUBN. OMIM:602997), which when mutated leads to hereditary megaloblastic anaemia 1 (OMIM:261100). [Source: WormBase]ZC116.3 is orthologous to the human gene CUBILIN (CUBN. OMIM:602997), which when mutated leads to hereditary megaloblastic anaemia 1 (OMIM:261100). [Source: WormBase] BY ORTHOLOGY TO:ZC116.3
14.627 -15.71 0.00462567 1300 3 2 3 [+] picture button
CBG09643 ENSCBRT00000005805 Vacuolar protein sorting protein 54 (Protein scattered). [Source:Uniprot/SWISSPROT;Acc:Q9VLC0]Vacuolar protein sorting protein 54 (Protein scattered). [Source:Uniprot/SWISSPROT;Acc:Q9VLC0] BY ORTHOLOGY TO:CG3766-RA
14.7245 -16.56 0.00471342 1300 3 2 3 [+] picture button
CBG05708 ENSCBRT00000009195 Serpentine Receptor, class X family member (srx-19) [Source:RefSeq_peptide;Acc:NP_501057]Serpentine Receptor, class X family member (srx-19) [Source:RefSeq_peptide;Acc:NP_501057] BY ORTHOLOGY TO:T05A12.1
14.6182 -23.37 0.00514994 1300 5 1 5 [+] picture button
CBG11619 ENSCBRT00000011408 C48G7.1 [Source:RefSeq_peptide;Acc:NP_506651]C48G7.1 [Source:RefSeq_peptide;Acc:NP_506651] BY ORTHOLOGY TO:C48G7.1
14.6893 -19.22 0.00515338 1300 3 1 3 [+] picture button
CBG04441 ENSCBRT00000008931 C43F9.5 [Source:RefSeq_peptide;Acc:NP_501957]C43F9.5 [Source:RefSeq_peptide;Acc:NP_501957] BY ORTHOLOGY TO:C43F9.5
15.6271 -20.43 0.005223 1300 5 2 7 [+] picture button
CBG06120 ENSCBRT00000008390 F40F11.2 [Source:RefSeq_peptide;Acc:NP_502185]F40F11.2 [Source:RefSeq_peptide;Acc:NP_502185] BY ORTHOLOGY TO:F40F11.2
14.831 -16.72 0.00542215 1300 3 2 3 [+] picture button
ENSCBRT00000013870 K06C4.17 [Source:RefSeq_peptide;Acc:NP_505299]K06C4.17 [Source:RefSeq_peptide;Acc:NP_505299] BY ORTHOLOGY TO:K06C4.17
17.0793 -24.87 0.00558904 1300 4 1 5 [+] picture button
CBG10649 ENSCBRT00000008860 Inward Rectifying K (potassium) channel family member (irk-3) [Source:RefSeq_peptide;Acc:NP_510395]Inward Rectifying K (potassium) channel family member (irk-3) [Source:RefSeq_peptide;Acc:NP_510395] BY ORTHOLOGY TO:K04G11.5
14.6182 -18.34 0.00565859 1300 1 2 1 [+] picture button
CBG14679 ENSCBRT00000006845 C03F11.2 [Source:RefSeq_peptide;Acc:NP_508918]C03F11.2 [Source:RefSeq_peptide;Acc:NP_508918] BY ORTHOLOGY TO:C03F11.2
14.7551 -16.37 0.00572426 1300 4 1 4 [+] picture button
CBG17359 ENSCBRT00000001146 ZK455.8a [Source:RefSeq_peptide;Acc:NP_509899]ZK455.8a [Source:RefSeq_peptide;Acc:NP_509899] BY ORTHOLOGY TO:ZK455.8a
17.0222 -25.74 0.0059376 1300 3 1 3 [+] picture button
CBG09482 ENSCBRT00000005997 far-5 encodes a member of a class of fatty acid-and retinol-binding proteins that are known to be secreted by parasitic nematodes and plants. far-5 binds lipid in fluorescence-based assays, however, the precise function of far-5 is not known. [Source: WormBase]far-5 encodes a member of a class of fatty acid-and retinol-binding proteins that are known to be secreted by parasitic nematodes and plants. far-5 binds lipid in fluorescence-based assays, however, the precise function of far-5 is not known. [Source: WormBase] BY ORTHOLOGY TO:F15B9.3
16.7736 -21.16 0.00609398 1300 2 2 3 [+] picture button
CBG07432 ENSCBRT00000011091 F18H3.1 [Source:RefSeq_peptide;Acc:NP_510258]F18H3.1 [Source:RefSeq_peptide;Acc:NP_510258] BY ORTHOLOGY TO:F18H3.1
14.6755 -18.59 0.00609398 1300 3 1 3 [+] picture button
CBG01304 ENSCBRT00000005181 T24A6.20 [Source:RefSeq_peptide;Acc:NP_503996]T24A6.20 [Source:RefSeq_peptide;Acc:NP_503996] BY ORTHOLOGY TO:T24A6.20
14.7257 -17.31 0.00609398 1300 6 1 6 [+] picture button
CBG18645 ENSCBRT00000011223 Serpentine Receptor, class W family member (srw-17) [Source:RefSeq_peptide;Acc:NP_506783]Serpentine Receptor, class W family member (srw-17) [Source:RefSeq_peptide;Acc:NP_506783] BY ORTHOLOGY TO:T10H4.6
14.5405 -17.57 0.00609398 1300 1 1 1 [+] picture button
CBG09921 ENSCBRT00000008093 C05B5.8 [Source:RefSeq_peptide;Acc:NP_001021142]C05B5.8 [Source:RefSeq_peptide;Acc:NP_001021142] BY ORTHOLOGY TO:C05B5.8
16.9571 -23.08 0.00636113 1300 1 1 1 [+] picture button
CBG23815 ENSCBRT00000005890 Y39B6A.43a [Source:RefSeq_peptide;Acc:NP_741652]Y39B6A.43a [Source:RefSeq_peptide;Acc:NP_741652] BY ORTHOLOGY TO:Y39B6A.43a
16.8994 -23.23 0.0067618 1300 2 1 3 [+] picture button
CBG08081 ENSCBRT00000003522 Vacuolar protein sorting-associated protein 45 (h-VPS45) (hlVps45). [Source:Uniprot/SWISSPROT;Acc:Q9NRW7]Vacuolar protein sorting-associated protein 45 (h-VPS45) (hlVps45). [Source:Uniprot/SWISSPROT;Acc:Q9NRW7] BY ORTHOLOGY TO:ENSMMUT00000019205
14.9102 -18.17 0.00710268 1300 3 1 5 [+] picture button
CBG03223 ENSCBRT00000006835 The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). [Source: WormBase]The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). [Source: WormBase] BY ORTHOLOGY TO:C18E9.3a
14.9406 -15.51 0.00712878 1300 4 1 6 [+] picture button
CBG04201 ENSCBRT00000007598 arx-7 encodes the C. elegans ortholog of the p16Arc subunit of the actin-related protein (Arp)2/3 complex. [Source: WormBase]arx-7 encodes the C. elegans ortholog of the p16Arc subunit of the actin-related protein (Arp)2/3 complex. [Source: WormBase] BY ORTHOLOGY TO:M01B12.3
14.4346 -17.7 0.00769203 1300 3 2 8 [+] picture button
CBG13104 ENSCBRT00000000103 CG31116-PC, isoform C [Source:RefSeq_peptide;Acc:NP_731634]CG31116-PC, isoform C [Source:RefSeq_peptide;Acc:NP_731634] BY ORTHOLOGY TO:CG31116-RD
16.7753 -23.57 0.00771046 1300 2 1 3 [+] picture button
CBG18374 ENSCBRT00000001570 Ras-related protein Rab-33. [Source:Uniprot/SWISSPROT;Acc:Q20365]Ras-related protein Rab-33. [Source:Uniprot/SWISSPROT;Acc:Q20365] BY ORTHOLOGY TO:F43D9.2
14.4923 -20.04 0.00797639 1300 7 1 6 [+] picture button
CBG09348 ENSCBRT00000006363 C14C11.1 [Source:RefSeq_peptide;Acc:NP_504492]C14C11.1 [Source:RefSeq_peptide;Acc:NP_504492] BY ORTHOLOGY TO:C14C11.1
16.6811 -25.64 0.0085177 1300 6 2 5 [+] picture button
CBG23489 ENSCBRT00000011593 Serpentine Receptor, class H family member (srh-25) [Source:RefSeq_peptide;Acc:NP_506119]Serpentine Receptor, class H family member (srh-25) [Source:RefSeq_peptide;Acc:NP_506119] BY ORTHOLOGY TO:C54D10.6
16.6648 -24.08 0.00866598 1300 2 1 2 [+] picture button
CBG00348 ENSCBRT00000002024 Y105C5B.16 [Source:RefSeq_peptide;Acc:NP_502905]Y105C5B.16 [Source:RefSeq_peptide;Acc:NP_502905] BY ORTHOLOGY TO:Y105C5B.16
16.6648 -16.92 0.00866598 1300 4 1 5 [+] picture button
CBG22279 ENSCBRT00000003603 ceh-17 encodes a phox-2-like homeodomain protein that is a member of the Q50 paired-like class of homeobox proteins and the vertebrate orthologue of Phox2a and Phox2b. that affects ALA and SIA axonal development. ceh-17 affects ALA and SIA antero-posterior axonal growth and navigation, and is expressed in five neurons of the ring ganglia (ALA and the 4 SIAs) with strongest expression in embryos and in L1 stage larvae. [Source: WormBase]ceh-17 encodes a phox-2-like homeodomain protein that is a member of the Q50 paired-like class of homeobox proteins and the vertebrate orthologue of Phox2a and Phox2b. that affects ALA and SIA axonal development. ceh-17 affects ALA and SIA antero-posterior axonal growth and navigation, and is expressed in five neurons of the ring ganglia (ALA and the 4 SIAs) with strongest expression in embryos and in L1 stage larvae. [Source: WormBase] BY ORTHOLOGY TO:D1007.1
14.3421 -14.77 0.00882478 1300 4 1 3 [+] picture button
CBG22546 ENSCBRT00000006038 Y75B8A.25 [Source:RefSeq_peptide;Acc:NP_499597]Y75B8A.25 [Source:RefSeq_peptide;Acc:NP_499597] BY ORTHOLOGY TO:Y75B8A.25
14.3356 -24.12 0.00893581 1300 5 1 5 [+] picture button
CBG12410 ENSCBRT00000013155 F32H2.8 [Source:RefSeq_peptide;Acc:NP_492418]F32H2.8 [Source:RefSeq_peptide;Acc:NP_492418] BY ORTHOLOGY TO:F32H2.8
16.6348 -24.59 0.00894474 1300 2 1 2 [+] picture button
CBG22974 ENSCBRT00000008812 dicer-1dicer-1 BY ORTHOLOGY TO:AAEL001612-RA
14.3345 -17.6 0.0089547 1300 4 1 4 [+] picture button
CBG05647 ENSCBRT00000005432 Serine/threonine protein kinase 11 (EC 2.7.11.1) (Serine/threonine- protein kinase LKB1). [Source:Uniprot/SWISSPROT;Acc:Q0GGW5]Serine/threonine protein kinase 11 (EC 2.7.11.1) (Serine/threonine- protein kinase LKB1). [Source:Uniprot/SWISSPROT;Acc:Q0GGW5] BY ORTHOLOGY TO:ENSGALT00000004248
16.5899 -24.87 0.00937922 1300 6 1 6 [+] picture button
CBG04196 ENSCBRT00000007609 ARL3, putativeARL3, putative BY ORTHOLOGY TO:AAEL010423-RA
14.3443 -13.71 0.00946817 1300 3 1 4 [+] picture button
CBG10010 ENSCBRT00000008147 Helix-loop-helix protein 4. [Source:Uniprot/SWISSPROT;Acc:P34555]Helix-loop-helix protein 4. [Source:Uniprot/SWISSPROT;Acc:P34555] BY ORTHOLOGY TO:T05G5.2
16.5163 -17.5 0.0101359 1300 4 1 4 [+] picture button

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