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Target Listing


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Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cbr-miR-248

192 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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CBG07337 ENSCBRT00000011800 The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). [Source: WormBase]The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77). [Source: WormBase] BY ORTHOLOGY TO:F48F7.4
16.1642 -18.15 0.0000696672 1300 3 1 2 [+] picture button
CBG06863 ENSCBRT00000007290 deoxycytidylate deaminasedeoxycytidylate deaminase BY ORTHOLOGY TO:AAEL014287-RA
14.5927 -19.5 0.000225851 1300 3 1 3 [+] picture button
ENSCBRT00000005678 Protein YIPF5 (YIP1 family member 5) (YPT-interacting protein 1 A) (Five-pass transmembrane protein localizing in the Golgi apparatus and the endoplasmic reticulum 5) (Smooth muscle cell-associated protein 5) (SMAP-5). [Source:Uniprot/SWISSPROT;Acc:Q969M3]Protein YIPF5 (YIP1 family member 5) (YPT-interacting protein 1 A) (Five-pass transmembrane protein localizing in the Golgi apparatus and the endoplasmic reticulum 5) (Smooth muscle cell-associated protein 5) (SMAP-5). [Source:Uniprot/SWISSPROT;Acc:Q969M3] BY ORTHOLOGY TO:ENSGACT00000027451
15.6413 -21.54 0.000311249 1300 6 1 5 [+] picture button
CBG19878 ENSCBRT00000002422 C55C3.5 [Source:RefSeq_peptide;Acc:NP_500848]C55C3.5 [Source:RefSeq_peptide;Acc:NP_500848] BY ORTHOLOGY TO:C55C3.5
15.727 -22.05 0.000376968 1300 4 2 5 [+] picture button
CBG08804 ENSCBRT00000000551 Homolog of Gallus gallus "Anti-dorsalizing morphogenetic protein. [Source:Uniprot/SPTREMBL;Acc:Q9PVK1]"Homolog of Gallus gallus "Anti-dorsalizing morphogenetic protein. [Source:Uniprot/SPTREMBL;Acc:Q9PVK1]" BY ORTHOLOGY TO:SINFRUT00000178665
15.4167 -19.72 0.000607298 1300 4 1 3 [+] picture button
CBG20281 ENSCBRT00000002015 T27A3.6 is orthologous to the human gene MOLYBDENUM COFACTOR BIOSYSTHESIS PROTEIN E (MOCS2. OMIM:603708), which when mutated leads to disease. [Source: WormBase]T27A3.6 is orthologous to the human gene MOLYBDENUM COFACTOR BIOSYSTHESIS PROTEIN E (MOCS2. OMIM:603708), which when mutated leads to disease. [Source: WormBase] BY ORTHOLOGY TO:T27A3.6
15.2344 -20.78 0.000954976 1300 3 2 3 [+] picture button
CBG17543 ENSCBRT00000002097 K09C8.2 [Source:RefSeq_peptide;Acc:NP_509831]K09C8.2 [Source:RefSeq_peptide;Acc:NP_509831] BY ORTHOLOGY TO:K09C8.2
15.7124 -16.19 0.00135831 1300 8 1 8 [+] picture button
CBG01898 ENSCBRT00000005746 F47A4.1a [Source:RefSeq_peptide;Acc:NP_741879]F47A4.1a [Source:RefSeq_peptide;Acc:NP_741879] BY ORTHOLOGY TO:F47A4.1b
14.7861 -22.79 0.00147472 1300 2 1 1 [+] picture button
CBG15772 ENSCBRT00000012116 CG11679-PA [Source:RefSeq_peptide;Acc:NP_573063]CG11679-PA [Source:RefSeq_peptide;Acc:NP_573063] BY ORTHOLOGY TO:CG11679-RA
16.1242 -20.14 0.00152273 1300 4 1 5 [+] picture button
CBG14803 ENSCBRT00000006979 C54G7.1 [Source:RefSeq_peptide;Acc:NP_508939]C54G7.1 [Source:RefSeq_peptide;Acc:NP_508939] BY ORTHOLOGY TO:C54G7.1
15.0133 -15.52 0.00161615 1300 3 1 3 [+] picture button
CBG15296 ENSCBRT00000009570 3-hydroxy-3-methylglutaryl-Coenzyme A reductase [Source:MarkerSymbol;Acc:MGI:96159]3-hydroxy-3-methylglutaryl-Coenzyme A reductase [Source:MarkerSymbol;Acc:MGI:96159] BY ORTHOLOGY TO:ENSMUST00000022176
14.88 -16.29 0.00161803 1300 4 2 6 [+] picture button
CBG14673 ENSCBRT00000006863 F35C8.7b [Source:RefSeq_peptide;Acc:NP_741790]F35C8.7b [Source:RefSeq_peptide;Acc:NP_741790] BY ORTHOLOGY TO:F35C8.7b
14.9433 -16.53 0.00164196 1300 2 2 2 [+] picture button
CBG20828 ENSCBRT00000001308 F01D5.8 [Source:RefSeq_peptide;Acc:NP_496938]F01D5.8 [Source:RefSeq_peptide;Acc:NP_496938] BY ORTHOLOGY TO:F01D5.8
14.8463 -15.21 0.00173269 1300 2 2 2 [+] picture button
CBG13585 ENSCBRT00000007718 K08D12.4 [Source:RefSeq_peptide;Acc:NP_500124]K08D12.4 [Source:RefSeq_peptide;Acc:NP_500124] BY ORTHOLOGY TO:K08D12.4
14.6522 -17.52 0.00192954 1300 4 1 3 [+] picture button
CBG22707 ENSCBRT00000004217 C17H11.6c [Source:RefSeq_peptide;Acc:NP_001024416]C17H11.6c [Source:RefSeq_peptide;Acc:NP_001024416] BY ORTHOLOGY TO:C17H11.6a
15.3264 -19.66 0.00200188 1300 4 1 5 [+] picture button
CBG12694 ENSCBRT00000014345 ZC581.3 [Source:RefSeq_peptide;Acc:NP_491911]ZC581.3 [Source:RefSeq_peptide;Acc:NP_491911] BY ORTHOLOGY TO:ZC581.3
14.8021 -16.69 0.0021226 1300 4 2 3 [+] picture button
CBG15442 ENSCBRT00000010761 M02D8.5 [Source:RefSeq_peptide;Acc:NP_509484]M02D8.5 [Source:RefSeq_peptide;Acc:NP_509484] BY ORTHOLOGY TO:M02D8.5
14.6934 -12.92 0.00216164 1300 2 1 1 [+] picture button
CBG00864 ENSCBRT00000003967 growth arrest specific 1 [Source:MarkerSymbol;Acc:MGI:95655]growth arrest specific 1 [Source:MarkerSymbol;Acc:MGI:95655] BY ORTHOLOGY TO:ENSMUST00000065086
14.7283 -13.7 0.00219982 1300 6 1 9 [+] picture button
CBG19702 ENSCBRT00000000308 Putative D-amino-acid oxidase F20H11.5 precursor (EC 1.4.3.-) (DAMOX) (DAO) (DAAO). [Source:Uniprot/SWISSPROT;Acc:O01739]Putative D-amino-acid oxidase F20H11.5 precursor (EC 1.4.3.-) (DAMOX) (DAO) (DAAO). [Source:Uniprot/SWISSPROT;Acc:O01739] BY ORTHOLOGY TO:F20H11.5
14.7492 -23.16 0.00234314 1300 5 2 4 [+] picture button
CBG05682 ENSCBRT00000005319 TWiK family of potassium channels family member (twk-33) [Source:RefSeq_peptide;Acc:NP_507480]TWiK family of potassium channels family member (twk-33) [Source:RefSeq_peptide;Acc:NP_507480] BY ORTHOLOGY TO:W06D12.5
14.6584 -22.91 0.00253264 1300 3 1 3 [+] picture button
CBG05622 ENSCBRT00000005405 Serpentine Receptor, class SX family member (srsx-37) [Source:RefSeq_peptide;Acc:NP_506777]Serpentine Receptor, class SX family member (srsx-37) [Source:RefSeq_peptide;Acc:NP_506777] BY ORTHOLOGY TO:M01B2.7
14.6522 -17.38 0.00256433 1300 2 1 2 [+] picture button
CBG11882 ENSCBRT00000009269 Low-density lipoprotein receptor-related protein precursor (LRP). [Source:Uniprot/SWISSPROT;Acc:Q04833]Low-density lipoprotein receptor-related protein precursor (LRP). [Source:Uniprot/SWISSPROT;Acc:Q04833] BY ORTHOLOGY TO:F29D11.1
14.9017 -20.88 0.00300912 1300 3 2 3 [+] picture button
CBG15935 ENSCBRT00000014218 F10D7.3 [Source:RefSeq_peptide;Acc:NP_510815]F10D7.3 [Source:RefSeq_peptide;Acc:NP_510815] BY ORTHOLOGY TO:F10D7.3
15.5121 -21.37 0.00303303 1300 2 2 3 [+] picture button
CBG16327 ENSCBRT00000012658 F-box only protein 30. [Source:Uniprot/SWISSPROT;Acc:Q8TB52]F-box only protein 30. [Source:Uniprot/SWISSPROT;Acc:Q8TB52] BY ORTHOLOGY TO:SINFRUT00000172219
14.2025 -20.28 0.00321035 1300 4 1 3 [+] picture button
CBG08168 ENSCBRT00000003765 ZK1193.2 [Source:RefSeq_peptide;Acc:NP_508098]ZK1193.2 [Source:RefSeq_peptide;Acc:NP_508098] BY ORTHOLOGY TO:ZK1193.2
15.3557 -15.54 0.00329383 1300 4 1 3 [+] picture button
CBG03053 ENSCBRT00000007013 C14A4.12a [Source:RefSeq_peptide;Acc:NP_001021948]C14A4.12a [Source:RefSeq_peptide;Acc:NP_001021948] BY ORTHOLOGY TO:C14A4.12a
15.3852 -16.43 0.00335053 1300 4 2 6 [+] picture button
CBG20203 ENSCBRT00000000812 KIAA1409 (KIAA1409), mRNA [Source:RefSeq_dna;Acc:NM_020818]KIAA1409 (KIAA1409), mRNA [Source:RefSeq_dna;Acc:NM_020818] BY ORTHOLOGY TO:ENST00000344699
15.9489 -22.46 0.00337734 1300 4 1 4 [+] picture button
ENSCBRT00000003373 R08E3.2 [Source:RefSeq_peptide;Acc:NP_508823]R08E3.2 [Source:RefSeq_peptide;Acc:NP_508823] BY ORTHOLOGY TO:R08E3.2
14.5552 -24.89 0.00345784 1300 2 1 2 [+] picture button
CBG23276 ENSCBRT00000012302 secreted modular calcium-binding proteinsecreted modular calcium-binding protein BY ORTHOLOGY TO:AAEL012043-RA
14.3309 -19.59 0.0036598 1300 5 2 7 [+] picture button
CBG13586 ENSCBRT00000007721 proteasome subunit beta type 6,9proteasome subunit beta type 6,9 BY ORTHOLOGY TO:AAEL006441-RA
15.0098 -26.17 0.00368382 1300 5 1 5 [+] picture button
CBG14155 ENSCBRT00000002583 fax-1 encodes a predicted nuclear hormone receptor that contains two C4-type zinc fingers. FAX-1 is orthologous to the vertebrate photoreceptor-specific nuclear receptor (NR2E3 or PNR. OMIM:604485, mutated in enhanced S-cone syndrome and retinitis pigmentosa). FAX-1 is required for normal locomotion and for specification of neuronal identities, including pathfinding of the AVKR, AVKL, HSNL, and PVQL axons and expresion of the FMRFamide-like FLP-1 peptide neurotransmitter in AVKR and AVKL. FAX-1 is expressed in embryonic neurons, including the AVK interneurons, just prior to axon extension. [Source: WormBase]fax-1 encodes a predicted nuclear hormone receptor that contains two C4-type zinc fingers. FAX-1 is orthologous to the vertebrate photoreceptor-specific nuclear receptor (NR2E3 or PNR. OMIM:604485, mutated in enhanced S-cone syndrome and retinitis pigmentosa). FAX-1 is required for normal locomotion and for specification of neuronal identities, including pathfinding of the AVKR, AVKL, HSNL, and PVQL axons and expresion of the FMRFamide-like FLP-1 peptide neurotransmitter in AVKR and AVKL. FAX-1 is expressed in embryonic neurons, including the AVK interneurons, just prior to axon extension. [Source: WormBase] BY ORTHOLOGY TO:F56E3.4
15.4553 -20.67 0.00378386 1300 3 2 3 [+] picture button
CBG14874 ENSCBRT00000004535 RING finger protein 139 (Translocation in renal carcinoma on chromosome 8). [Source:Uniprot/SWISSPROT;Acc:Q8WU17]RING finger protein 139 (Translocation in renal carcinoma on chromosome 8). [Source:Uniprot/SWISSPROT;Acc:Q8WU17] BY ORTHOLOGY TO:ENST00000303545
14.481 -24.29 0.00381145 1300 5 2 5 [+] picture button
CBG14809 ENSCBRT00000006980 The mec-2 gene encodes a stomatin homolog required to sense gentle mechanical stimuli (e.g. touch) along the body wall. [Source: WormBase]The mec-2 gene encodes a stomatin homolog required to sense gentle mechanical stimuli (e.g. touch) along the body wall. [Source: WormBase] BY ORTHOLOGY TO:F14D12.4a
14.5025 -15.11 0.003908 1300 5 1 4 [+] picture button
CBG15803 ENSCBRT00000011330 Furin precursor (EC 3.4.21.75) (Paired basic amino acid residue cleaving enzyme) (PACE) (Dibasic-processing enzyme). [Source:Uniprot/SWISSPROT;Acc:P09958]Furin precursor (EC 3.4.21.75) (Paired basic amino acid residue cleaving enzyme) (PACE) (Dibasic-processing enzyme). [Source:Uniprot/SWISSPROT;Acc:P09958] BY ORTHOLOGY TO:ENSPTRT00000013760
15.4485 -18.99 0.00415678 1300 5 1 5 [+] picture button
CBG14285 ENSCBRT00000002717 F35A5.4 [Source:RefSeq_peptide;Acc:NP_508657]F35A5.4 [Source:RefSeq_peptide;Acc:NP_508657] BY ORTHOLOGY TO:F35A5.4
14.0373 -20.24 0.00443818 1300 6 1 5 [+] picture button
CBG08854 ENSCBRT00000000531 T19H12.6 [Source:RefSeq_peptide;Acc:NP_504305]T19H12.6 [Source:RefSeq_peptide;Acc:NP_504305] BY ORTHOLOGY TO:T19H12.6
16.9845 -22.07 0.00448886 1300 5 1 3 [+] picture button
CBG07776 ENSCBRT00000010610 sir-2.2 encodes a member of the conserved SIR2-like family of proteins that function in chromatin organization and remodeling. SIR-2.2 may play a role in genomic stability and protecing the genome against mutations, as loss of SIR-2.2 function via RNA-mediated interference (RNAi) results in an increased level of spontaneous mutagenesis. [Source: WormBase]sir-2.2 encodes a member of the conserved SIR2-like family of proteins that function in chromatin organization and remodeling. SIR-2.2 may play a role in genomic stability and protecing the genome against mutations, as loss of SIR-2.2 function via RNA-mediated interference (RNAi) results in an increased level of spontaneous mutagenesis. [Source: WormBase] BY ORTHOLOGY TO:F46G10.7b
14.3611 -21.34 0.00457934 1300 1 1 2 [+] picture button
CBG00112 ENSCBRT00000001550 C16D6.2 [Source:RefSeq_peptide;Acc:NP_510101]C16D6.2 [Source:RefSeq_peptide;Acc:NP_510101] BY ORTHOLOGY TO:C16D6.2
14.7492 -13.13 0.00478221 1300 2 1 2 [+] picture button
CBG21814 ENSCBRT00000004892 knl-3 encodes a novel protein. KNL-3 activity is essential for formation of a functional kinetochore and thus, for proper chromosome segregation and spindle pole separation. KNL-3 localizes to kinetochores throughout mitosis and this localization requires the activity of HCP-4 (CENP-C), a conserved kinetochore component that likely directs kinetochore assembly. KNL-3 copurifies with a group of 10 closely interacting kinetochore proteins that includes KNL-1, NDC-80, MIS-12, HIM-10, and KBP-1, -2, -3, -4, and-5. KNL-3 also copurifies with HCP-4(CENP-C). [Source: WormBase]knl-3 encodes a novel protein. KNL-3 activity is essential for formation of a functional kinetochore and thus, for proper chromosome segregation and spindle pole separation. KNL-3 localizes to kinetochores throughout mitosis and this localization requires the activity of HCP-4 (CENP-C), a conserved kinetochore component that likely directs kinetochore assembly. KNL-3 copurifies with a group of 10 closely interacting kinetochore proteins that includes KNL-1, NDC-80, MIS-12, HIM-10, and KBP-1, -2, -3, -4, and-5. KNL-3 also copurifies with HCP-4(CENP-C). [Source: WormBase] BY ORTHOLOGY TO:T10B5.6
14.3366 -20.61 0.00480631 1300 2 2 2 [+] picture button
CBG15004 ENSCBRT00000004402 C28D4.5 [Source:RefSeq_peptide;Acc:NP_501736]C28D4.5 [Source:RefSeq_peptide;Acc:NP_501736] BY ORTHOLOGY TO:C28D4.5
14.3134 -14.27 0.00503053 1300 6 1 6 [+] picture button
CBG02118 ENSCBRT00000004195 F47G3.1 [Source:RefSeq_peptide;Acc:NP_508432]F47G3.1 [Source:RefSeq_peptide;Acc:NP_508432] BY ORTHOLOGY TO:F47G3.1
14.3611 -18.87 0.00505779 1300 1 2 1 [+] picture button
CBG20325 ENSCBRT00000002651 Y39B6A.25 [Source:RefSeq_peptide;Acc:NP_741669]Y39B6A.25 [Source:RefSeq_peptide;Acc:NP_741669] BY ORTHOLOGY TO:Y39B6A.25
16.8173 -14.4 0.00535402 1300 2 1 3 [+] picture button
CBG12004 ENSCBRT00000011730 ptr-2 encodes an ortholog of Drosophila and human PTCHD3, which defines one of seven paralogous families of sterol sensing domain (SSD) proteins. PTR-2 is required for cytokinesis in somatic cells, but not in the germline (the converse of PTC-1's function). PTR-2 is partially required for normal molting from L4 to adult stages. PTR-2 is also required for normal male tail development, growth to full size, locomotion, and viability. [Source: WormBase]ptr-2 encodes an ortholog of Drosophila and human PTCHD3, which defines one of seven paralogous families of sterol sensing domain (SSD) proteins. PTR-2 is required for cytokinesis in somatic cells, but not in the germline (the converse of PTC-1's function). PTR-2 is partially required for normal molting from L4 to adult stages. PTR-2 is also required for normal male tail development, growth to full size, locomotion, and viability. [Source: WormBase] BY ORTHOLOGY TO:C32E8.8
14.332 -13.73 0.00540618 1300 3 2 5 [+] picture button
CBG08087 ENSCBRT00000003538 F53H8.3 [Source:RefSeq_peptide;Acc:NP_508181]F53H8.3 [Source:RefSeq_peptide;Acc:NP_508181] BY ORTHOLOGY TO:F53H8.3
16.7227 -23.24 0.00591515 1300 3 1 5 [+] picture button
CBG08215 ENSCBRT00000003610 K04G2.2 [Source:RefSeq_peptide;Acc:NP_492210]K04G2.2 [Source:RefSeq_peptide;Acc:NP_492210] BY ORTHOLOGY TO:K04G2.2
14.7918 -21.77 0.00601396 1300 2 1 3 [+] picture button
CBG08513 ENSCBRT00000000272 Y48G8AL.9 [Source:RefSeq_peptide;Acc:NP_490824]Y48G8AL.9 [Source:RefSeq_peptide;Acc:NP_490824] BY ORTHOLOGY TO:Y48G8AL.9
14.8825 -15.06 0.00610311 1300 4 2 4 [+] picture button
CBG07625 ENSCBRT00000010645 unc-7 encodes an innexin required for gap junction formation in invertebrates. UNC-7 is also required for normal locomotion, egg-laying, inhibition of feeding by tapping, avermectin sensitivity, and ivermectin sensitivity, as well as for the antagonism of UNC-79 and UNC-80 activity by volatile anesthetics. unc-7 is genetically required, and transcribed in, neurons rather than muscle cells, from larval stages L1 through L4. homologs of UNC-7 include Drosophila OGRE and SHAKING-B, as well as 24 C. elegans paralogs (including EAT-5, UNC-9, and INX-1 through INX-20). UNC-7 genetically interacts with UNC-124, and unc-7 mutants are phenotypically similar to unc-9 and unc-124 mutants. UNC-7 genetically interacts with AVR-14 and GLC-1 in the response to ivermectin. [Source: WormBase]unc-7 encodes an innexin required for gap junction formation in invertebrates. UNC-7 is also required for normal locomotion, egg-laying, inhibition of feeding by tapping, avermectin sensitivity, and ivermectin sensitivity, as well as for the antagonism of UNC-79 and UNC-80 activity by volatile anesthetics. unc-7 is genetically required, and transcribed in, neurons rather than muscle cells, from larval stages L1 through L4. homologs of UNC-7 include Drosophila OGRE and SHAKING-B, as well as 24 C. elegans paralogs (including EAT-5, UNC-9, and INX-1 through INX-20). UNC-7 genetically interacts with UNC-124, and unc-7 mutants are phenotypically similar to unc-9 and unc-124 mutants. UNC-7 genetically interacts with AVR-14 and GLC-1 in the response to ivermectin. [Source: WormBase] BY ORTHOLOGY TO:R07D5.1
14.6667 -18.55 0.00635128 1300 3 2 4 [+] picture button
CBG20115 ENSCBRT00000000711 Y111B2A.9a [Source:RefSeq_peptide;Acc:NP_001022822]Y111B2A.9a [Source:RefSeq_peptide;Acc:NP_001022822] BY ORTHOLOGY TO:Y111B2A.9b
14.3436 -14.22 0.0065805 1300 3 1 3 [+] picture button
CBG00985 ENSCBRT00000002179 Putative transporter C20orf59. [Source:Uniprot/SWISSPROT;Acc:Q9BYT1]Putative transporter C20orf59. [Source:Uniprot/SWISSPROT;Acc:Q9BYT1] BY ORTHOLOGY TO:ENSORLT00000012257
14.4171 -15.39 0.00725681 1300 2 1 3 [+] picture button
CBG00873 ENSCBRT00000003961 F42A8.1 [Source:RefSeq_peptide;Acc:NP_495991]F42A8.1 [Source:RefSeq_peptide;Acc:NP_495991] BY ORTHOLOGY TO:F42A8.1
14.0997 -17.19 0.0076264 1300 6 2 11 [+] picture button

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