spacer

Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cbr-miR-240

167 hits found.


Page 1 of 4
1 2 3 4 next >>

Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
picture button picture button picture button picture button picture button picture button picture button picture button picture button picture button
CBG24747 ENSCBRT00000008972 T06A1.1 [Source:RefSeq_peptide;Acc:NP_503533]T06A1.1 [Source:RefSeq_peptide;Acc:NP_503533] BY ORTHOLOGY TO:T06A1.1
14.7814 -13.32 0.000001 1300 9 1 13 [+] picture button
CBG18802 ENSCBRT00000012687 PolyRaY family member (pry-1) [Source:RefSeq_peptide;Acc:NP_493474]PolyRaY family member (pry-1) [Source:RefSeq_peptide;Acc:NP_493474] BY ORTHOLOGY TO:C37A5.9
14.4651 -17.31 0.000106282 1300 6 1 4 [+] picture button
CBG14325 ENSCBRT00000002755 R02E12.4 [Source:RefSeq_peptide;Acc:NP_508689]R02E12.4 [Source:RefSeq_peptide;Acc:NP_508689] BY ORTHOLOGY TO:R02E12.4
15.3495 -16.9 0.000275466 1300 3 1 3 [+] picture button
CBG17754 ENSCBRT00000000196 W10G11.12 [Source:RefSeq_peptide;Acc:NP_494586]W10G11.12 [Source:RefSeq_peptide;Acc:NP_494586] BY ORTHOLOGY TO:W10G11.12
19.1926 -30.79 0.000412983 1300 1 1 1 [+] picture button
CBG15310 ENSCBRT00000009584 Y76A2B.2 [Source:RefSeq_peptide;Acc:NP_499798]Y76A2B.2 [Source:RefSeq_peptide;Acc:NP_499798] BY ORTHOLOGY TO:Y76A2B.2
15.1055 -21.72 0.000830333 1300 6 1 4 [+] picture button
CBG19592 ENSCBRT00000001783 Signal recognition particle 72 kDa protein (SRP72). [Source:Uniprot/SWISSPROT;Acc:O76094]Signal recognition particle 72 kDa protein (SRP72). [Source:Uniprot/SWISSPROT;Acc:O76094] BY ORTHOLOGY TO:ENSORLT00000025306
15.8612 -20.98 0.00137582 1300 7 1 10 [+] picture button
CBG01450 ENSCBRT00000001901 ZC190.2 [Source:RefSeq_peptide;Acc:NP_505236]ZC190.2 [Source:RefSeq_peptide;Acc:NP_505236] BY ORTHOLOGY TO:ZC190.2
15.2362 -22.92 0.00140487 1300 5 1 8 [+] picture button
CBG07597 ENSCBRT00000011123 mbk-1 encodes a putative dual-specificity kinase (predicted to have both serine/threonine and tyrosine substrates) that is orthologous to Drosophila MINIBRAIN and mammalian DYRK1A/MnbK and that has a glutamine/asparagine-rich domain. MBK-1 is found in most or all nuclei, is dispensable for viability, and perturbs olfaction in AWC when overexpressed. [Source: WormBase]mbk-1 encodes a putative dual-specificity kinase (predicted to have both serine/threonine and tyrosine substrates) that is orthologous to Drosophila MINIBRAIN and mammalian DYRK1A/MnbK and that has a glutamine/asparagine-rich domain. MBK-1 is found in most or all nuclei, is dispensable for viability, and perturbs olfaction in AWC when overexpressed. [Source: WormBase] BY ORTHOLOGY TO:T04C10.1
14.8547 -17.61 0.00172082 1300 10 1 14 [+] picture button
CBG01066 ENSCBRT00000002283 Coiled-coil domain-containing protein 130 (9 kDa protein). [Source:Uniprot/SWISSPROT;Acc:P13994]Coiled-coil domain-containing protein 130 (9 kDa protein). [Source:Uniprot/SWISSPROT;Acc:P13994] BY ORTHOLOGY TO:ENSORLT00000024931
14.6835 -18.52 0.00195381 1300 2 1 2 [+] picture button
ENSCBRT00000003715 T19D7.3 [Source:RefSeq_peptide;Acc:NP_508134]T19D7.3 [Source:RefSeq_peptide;Acc:NP_508134] BY ORTHOLOGY TO:T19D7.3
14.8458 -15.56 0.00203183 1300 1 2 1 [+] picture button
CBG03310 ENSCBRT00000004989 acr-7 encodes an alpha-7-like homomer-forming subunit of the nicotinic acetylcholine receptor (nAChR) superfamily which encode ligand-gated ion channels that regulate fast action of acetylcholine at neuromuscular junctions and in the nervous system. ACR-7 is expressed pharyngeal muscle and in tail neurons distal to the anus, and is a member of the ACR-16-like group of nAChR subunits. [Source: WormBase]acr-7 encodes an alpha-7-like homomer-forming subunit of the nicotinic acetylcholine receptor (nAChR) superfamily which encode ligand-gated ion channels that regulate fast action of acetylcholine at neuromuscular junctions and in the nervous system. ACR-7 is expressed pharyngeal muscle and in tail neurons distal to the anus, and is a member of the ACR-16-like group of nAChR subunits. [Source: WormBase] BY ORTHOLOGY TO:T09A5.3
14.8131 -14.33 0.00206559 1300 3 2 3 [+] picture button
CBG05103 ENSCBRT00000010310 bli-3 encodes a large homolog of dual oxidase ('Ce-Duox1'), with an N-terminal peroxidase domain, two central calmodulin-binding EF hands, and a C-terminal superoxide-generating NADPH-oxidase domain. BLI-3 is required for dityrosine cross-linking of collagen, and thus for cuticular integrity. BLI-3 is thought to use cytosolic NADPH to generate reactive oxygen, which then drives the peroxidase ectodomain to cross-link free tyrosine in collagen. BLI-3 is expressed exclusively in hypodermal cells at low levels, with peaks of expression corresponding to collagen/cuticle biosynthesis. [Source: WormBase]bli-3 encodes a large homolog of dual oxidase ('Ce-Duox1'), with an N-terminal peroxidase domain, two central calmodulin-binding EF hands, and a C-terminal superoxide-generating NADPH-oxidase domain. BLI-3 is required for dityrosine cross-linking of collagen, and thus for cuticular integrity. BLI-3 is thought to use cytosolic NADPH to generate reactive oxygen, which then drives the peroxidase ectodomain to cross-link free tyrosine in collagen. BLI-3 is expressed exclusively in hypodermal cells at low levels, with peaks of expression corresponding to collagen/cuticle biosynthesis. [Source: WormBase] BY ORTHOLOGY TO:F56C11.1
14.4394 -13.59 0.00215637 1300 7 2 6 [+] picture button
CBG01279 ENSCBRT00000005145 Serpentine Receptor, class X family member (srx-66) [Source:RefSeq_peptide;Acc:NP_504085]Serpentine Receptor, class X family member (srx-66) [Source:RefSeq_peptide;Acc:NP_504085] BY ORTHOLOGY TO:K07C6.9
14.5674 -15.63 0.00268719 1300 4 2 4 [+] picture button
CBG06300 ENSCBRT00000010817 F22F7.4 [Source:RefSeq_peptide;Acc:NP_503572]F22F7.4 [Source:RefSeq_peptide;Acc:NP_503572] BY ORTHOLOGY TO:F22F7.4
14.4372 -15.39 0.00276673 1300 5 1 8 [+] picture button
CBG20968 ENSCBRT00000000586 W05H5.3 [Source:RefSeq_peptide;Acc:NP_496646]W05H5.3 [Source:RefSeq_peptide;Acc:NP_496646] BY ORTHOLOGY TO:W05H5.3
15.2842 -27.05 0.0028141 1300 5 1 3 [+] picture button
CBG02532 ENSCBRT00000006464 F59G1.4 [Source:RefSeq_peptide;Acc:NP_495177]F59G1.4 [Source:RefSeq_peptide;Acc:NP_495177] BY ORTHOLOGY TO:F59G1.4
14.6755 -16.96 0.00314041 1300 4 1 8 [+] picture button
CBG20648 ENSCBRT00000001365 Glutathione S-Transferase family member (gst-39) [Source:RefSeq_peptide;Acc:NP_497119]Glutathione S-Transferase family member (gst-39) [Source:RefSeq_peptide;Acc:NP_497119] BY ORTHOLOGY TO:Y53F4B.33
15.1055 -18.88 0.00395313 1300 6 1 8 [+] picture button
CBG08970 ENSCBRT00000008507 C05D2.8 [Source:RefSeq_peptide;Acc:NP_498208]C05D2.8 [Source:RefSeq_peptide;Acc:NP_498208] BY ORTHOLOGY TO:C05D2.8
14.6182 -21.87 0.00395313 1300 5 1 4 [+] picture button
CBG07605 ENSCBRT00000011116 flp-8 encodes three copies of a FMRFamide-related short peptide neurotransmitter. although the FLP-8 peptide can increase pharyngeal action potential frequency, loss of FLP-8 function does not result in a mutant phenotype, suggesting that FLP-8 may function redundantly with other FMRFamide-like peptides in the nervous system. FLP-8 expression is detected in embryos and larval stages, but not in adults. FLP-8 is expressed in the sensory neurons ASEL/R, URXL/R, and PVM. [Source: WormBase]flp-8 encodes three copies of a FMRFamide-related short peptide neurotransmitter. although the FLP-8 peptide can increase pharyngeal action potential frequency, loss of FLP-8 function does not result in a mutant phenotype, suggesting that FLP-8 may function redundantly with other FMRFamide-like peptides in the nervous system. FLP-8 expression is detected in embryos and larval stages, but not in adults. FLP-8 is expressed in the sensory neurons ASEL/R, URXL/R, and PVM. [Source: WormBase] BY ORTHOLOGY TO:F31F6.4a
15.6902 -17.56 0.00395313 1300 4 1 3 [+] picture button
CBG03670 ENSCBRT00000008743 Uncharacterized protein C1orf160. [Source:Uniprot/SWISSPROT;Acc:Q9H0R3]Uncharacterized protein C1orf160. [Source:Uniprot/SWISSPROT;Acc:Q9H0R3] BY ORTHOLOGY TO:ENSORLT00000005628
14.6141 -17.06 0.00404551 1300 7 2 7 [+] picture button
CBG08394 ENSCBRT00000012938 Y41D4A.5 [Source:RefSeq_peptide;Acc:NP_500128]Y41D4A.5 [Source:RefSeq_peptide;Acc:NP_500128] BY ORTHOLOGY TO:Y41D4A.5
14.4403 -13.68 0.00434057 1300 4 1 4 [+] picture button
CBG08216 ENSCBRT00000003608 K04G2.3 [Source:RefSeq_peptide;Acc:NP_492211]K04G2.3 [Source:RefSeq_peptide;Acc:NP_492211] BY ORTHOLOGY TO:K04G2.3
16.9086 -27.92 0.00459119 1300 2 1 3 [+] picture button
CBG08578 ENSCBRT00000002838 C15C8.5 [Source:RefSeq_peptide;Acc:NP_506188]C15C8.5 [Source:RefSeq_peptide;Acc:NP_506188] BY ORTHOLOGY TO:C15C8.5
14.3259 -15.06 0.00501626 1300 3 2 3 [+] picture button
CBG21355 ENSCBRT00000003793 W10G11.17 [Source:RefSeq_peptide;Acc:NP_494578]W10G11.17 [Source:RefSeq_peptide;Acc:NP_494578] BY ORTHOLOGY TO:W10G11.17
16.6596 -25.16 0.00596392 1300 3 1 3 [+] picture button
CBG23703 ENSCBRT00000004146 Transcription initiation factor IIF subunit beta (EC 3.6.1.-) (TFIIF- beta) (ATP-dependent helicase GTF2F2) (General transcription factor IIF subunit 2) (Transcription initiation factor RAP30). [Source:Uniprot/SWISSPROT;Acc:Q01750]Transcription initiation factor IIF subunit beta (EC 3.6.1.-) (TFIIF- beta) (ATP-dependent helicase GTF2F2) (General transcription factor IIF subunit 2) (Transcription initiation factor RAP30). [Source:Uniprot/SWISSPROT;Acc:Q01750] BY ORTHOLOGY TO:ENSRNOT00000044254
16.5215 -27.41 0.00689403 1300 4 1 4 [+] picture button
CBG05880 ENSCBRT00000009225 F55G1.5 [Source:RefSeq_peptide;Acc:NP_501198]F55G1.5 [Source:RefSeq_peptide;Acc:NP_501198] BY ORTHOLOGY TO:F55G1.5
14.2697 -16.64 0.00732063 1300 5 1 5 [+] picture button
CBG14129 ENSCBRT00000002567 F52E4.5 [Source:RefSeq_peptide;Acc:NP_508527]F52E4.5 [Source:RefSeq_peptide;Acc:NP_508527] BY ORTHOLOGY TO:F52E4.5
14.0526 -11.4 0.00739521 1300 4 1 3 [+] picture button
CBG12157 ENSCBRT00000013283 F36F12.1 [Source:RefSeq_peptide;Acc:NP_503571]F36F12.1 [Source:RefSeq_peptide;Acc:NP_503571] BY ORTHOLOGY TO:F36F12.1
15.2066 -17.89 0.00786967 1300 2 1 2 [+] picture button
ENSCBRT00000005988 R186.6 [Source:RefSeq_peptide;Acc:NP_506242]R186.6 [Source:RefSeq_peptide;Acc:NP_506242] BY ORTHOLOGY TO:R186.6
15.8947 -18.73 0.00863892 1300 5 2 8 [+] picture button
CBG02091 ENSCBRT00000004169 F52H2.4 [Source:RefSeq_peptide;Acc:NP_508460]F52H2.4 [Source:RefSeq_peptide;Acc:NP_508460] BY ORTHOLOGY TO:F52H2.4
16.3058 -25.36 0.00864319 1300 1 1 1 [+] picture button
ENSCBRT00000013365 T27E4.6 [Source:RefSeq_peptide;Acc:NP_505352]T27E4.6 [Source:RefSeq_peptide;Acc:NP_505352] BY ORTHOLOGY TO:T27E4.6
13.9678 -20.94 0.0087004 1300 2 1 3 [+] picture button
CBG23018 ENSCBRT00000008859 Replication factor C subunit 2 (Replication factor C 40 kDa subunit) (RF-C 40 kDa subunit) (RFC40) (Activator 1 40 kDa subunit) (A1 40 kDa subunit). [Source:Uniprot/SWISSPROT;Acc:P35250]Replication factor C subunit 2 (Replication factor C 40 kDa subunit) (RF-C 40 kDa subunit) (RFC40) (Activator 1 40 kDa subunit) (A1 40 kDa subunit). [Source:Uniprot/SWISSPROT;Acc:P35250] BY ORTHOLOGY TO:SINFRUT00000128611
16.2986 -22.06 0.00870895 1300 5 1 5 [+] picture button
CBG04396 ENSCBRT00000008902 Uncharacterized protein R09E10.5 precursor. [Source:Uniprot/SWISSPROT;Acc:Q21874]Uncharacterized protein R09E10.5 precursor. [Source:Uniprot/SWISSPROT;Acc:Q21874] BY ORTHOLOGY TO:R09E10.5
13.9763 -15.57 0.00884679 1300 5 1 6 [+] picture button
CBG21909 ENSCBRT00000008219 Putative tyrosinase-like protein tyr-3 precursor. [Source:Uniprot/SWISSPROT;Acc:Q19673]Putative tyrosinase-like protein tyr-3 precursor. [Source:Uniprot/SWISSPROT;Acc:Q19673] BY ORTHOLOGY TO:F21C3.2
16.2678 -20.27 0.00899383 1300 3 1 3 [+] picture button
CBG01769 ENSCBRT00000005634 Nucleolar protein 9. [Source:Uniprot/SWISSPROT;Acc:Q5SY16]Nucleolar protein 9. [Source:Uniprot/SWISSPROT;Acc:Q5SY16] BY ORTHOLOGY TO:ENSOANT00000018605
16.2253 -22.73 0.00940296 1300 2 1 2 [+] picture button
CBG07684 ENSCBRT00000010654 Y15E3A.3 [Source:RefSeq_peptide;Acc:NP_510538]Y15E3A.3 [Source:RefSeq_peptide;Acc:NP_510538] BY ORTHOLOGY TO:Y15E3A.3
16.1557 -19.7 0.0101132 1300 4 1 4 [+] picture button
CBG01766 ENSCBRT00000005633 NOT ANNOTATED
16.0092 -22.73 0.0117858 1300 2 1 2 [+] picture button
CBG21814 ENSCBRT00000004892 knl-3 encodes a novel protein. KNL-3 activity is essential for formation of a functional kinetochore and thus, for proper chromosome segregation and spindle pole separation. KNL-3 localizes to kinetochores throughout mitosis and this localization requires the activity of HCP-4 (CENP-C), a conserved kinetochore component that likely directs kinetochore assembly. KNL-3 copurifies with a group of 10 closely interacting kinetochore proteins that includes KNL-1, NDC-80, MIS-12, HIM-10, and KBP-1, -2, -3, -4, and-5. KNL-3 also copurifies with HCP-4(CENP-C). [Source: WormBase]knl-3 encodes a novel protein. KNL-3 activity is essential for formation of a functional kinetochore and thus, for proper chromosome segregation and spindle pole separation. KNL-3 localizes to kinetochores throughout mitosis and this localization requires the activity of HCP-4 (CENP-C), a conserved kinetochore component that likely directs kinetochore assembly. KNL-3 copurifies with a group of 10 closely interacting kinetochore proteins that includes KNL-1, NDC-80, MIS-12, HIM-10, and KBP-1, -2, -3, -4, and-5. KNL-3 also copurifies with HCP-4(CENP-C). [Source: WormBase] BY ORTHOLOGY TO:T10B5.6
15.9662 -20.9 0.0123268 1300 2 2 2 [+] picture button
CBG07018 ENSCBRT00000012395 Mitochondrial 2-oxoglutarate/malate carrier protein (OGCP) (Solute carrier family 25 member 11). [Source:Uniprot/SWISSPROT;Acc:Q02978]Mitochondrial 2-oxoglutarate/malate carrier protein (OGCP) (Solute carrier family 25 member 11). [Source:Uniprot/SWISSPROT;Acc:Q02978] BY ORTHOLOGY TO:ENSMMUT00000003930
15.9043 -18.01 0.0131485 1300 3 1 4 [+] picture button
CBG24774 ENSCBRT00000009548 C02F5.10 [Source:RefSeq_peptide;Acc:NP_498809]C02F5.10 [Source:RefSeq_peptide;Acc:NP_498809] BY ORTHOLOGY TO:C02F5.10
15.8947 -18.62 0.0132811 1300 2 1 2 [+] picture button
CBG09528 ENSCBRT00000005956 Oligoribonuclease, mitochondrial precursor (EC 3.1.-.-) (Small fragment nuclease) (RNA exonuclease 2 homolog). [Source:Uniprot/SWISSPROT;Acc:Q9Y3B8]Oligoribonuclease, mitochondrial precursor (EC 3.1.-.-) (Small fragment nuclease) (RNA exonuclease 2 homolog). [Source:Uniprot/SWISSPROT;Acc:Q9Y3B8] BY ORTHOLOGY TO:ENSMMUT00000017187
15.7905 -18.35 0.0148036 1300 2 1 2 [+] picture button
CBG24160 ENSCBRT00000004080 Y39E4B.7 [Source:RefSeq_peptide;Acc:NP_499713]Y39E4B.7 [Source:RefSeq_peptide;Acc:NP_499713] BY ORTHOLOGY TO:Y39E4B.7
15.7848 -22.35 0.0148915 1300 1 1 1 [+] picture button
CBG23048 ENSCBRT00000006321 Y75B8A.16 [Source:RefSeq_peptide;Acc:NP_499588]Y75B8A.16 [Source:RefSeq_peptide;Acc:NP_499588] BY ORTHOLOGY TO:Y75B8A.16
15.68 -25.99 0.0166056 1300 5 2 5 [+] picture button
CBG20395 ENSCBRT00000003640 chromatin modifying protein 2B [Source:MarkerSymbol;Acc:MGI:1916192]chromatin modifying protein 2B [Source:MarkerSymbol;Acc:MGI:1916192] BY ORTHOLOGY TO:ENSMUST00000004965
15.6748 -16.81 0.016695 1300 8 1 13 [+] picture button
CBG13508 ENSCBRT00000009372 KIAA1609 (KIAA1609), mRNA [Source:RefSeq_dna;Acc:NM_020947]KIAA1609 (KIAA1609), mRNA [Source:RefSeq_dna;Acc:NM_020947] BY ORTHOLOGY TO:ENST00000343629
15.6356 -22 0.0173899 1300 5 1 5 [+] picture button
CBG21866 ENSCBRT00000004863 F32D1.1 encodes an homolog of human SPASTIN (OMIM:604277, mutated in spastic paraplegia), FIDGETIN (OMIM:605295, mutated in fidget mice), and FIDGETIN-LIKE-1, and of Drosophila SPASTIN. recombinant F32D1.1 protein has N-ethylmaleimide-sensitive ATPase activity in vitro, which is strongly dependent on the C368 residue immediately C-terminal to its Walker A motif. F32D1.1 is required for persistence of the germline in RNAi assays. [Source: WormBase]F32D1.1 encodes an homolog of human SPASTIN (OMIM:604277, mutated in spastic paraplegia), FIDGETIN (OMIM:605295, mutated in fidget mice), and FIDGETIN-LIKE-1, and of Drosophila SPASTIN. recombinant F32D1.1 protein has N-ethylmaleimide-sensitive ATPase activity in vitro, which is strongly dependent on the C368 residue immediately C-terminal to its Walker A motif. F32D1.1 is required for persistence of the germline in RNAi assays. [Source: WormBase] BY ORTHOLOGY TO:F32D1.1
15.6236 -19.99 0.0176081 1300 6 1 6 [+] picture button
CBG08990 ENSCBRT00000008483 F54E7.8 [Source:RefSeq_peptide;Acc:NP_498220]F54E7.8 [Source:RefSeq_peptide;Acc:NP_498220] BY ORTHOLOGY TO:F54E7.8
15.6022 -24.78 0.0180032 1300 5 1 5 [+] picture button
CBG03677 ENSCBRT00000008738 B0286.1 [Source:RefSeq_peptide;Acc:NP_494776]B0286.1 [Source:RefSeq_peptide;Acc:NP_494776] BY ORTHOLOGY TO:B0286.1
15.6001 -22.1 0.018042 1300 4 1 5 [+] picture button
CBG24510 ENSCBRT00000011290 dhs-25 encodes a short-chain dehydrogenase predicted to be mitochondrial. [Source: WormBase]dhs-25 encodes a short-chain dehydrogenase predicted to be mitochondrial. [Source: WormBase] BY ORTHOLOGY TO:F09E10.3
15.5928 -18.17 0.0181793 1300 1 1 1 [+] picture button
CBG03724 ENSCBRT00000008602 CDNA FLJ41131 fis, clone BRACE2024627. [Source:Uniprot/SPTREMBL;Acc:Q6ZWG5]CDNA FLJ41131 fis, clone BRACE2024627. [Source:Uniprot/SPTREMBL;Acc:Q6ZWG5] BY ORTHOLOGY TO:ENSORLT00000008170
15.5928 -23.59 0.0181793 1300 5 1 5 [+] picture button

Page 1 of 4
1 2 3 4 next >>

Download table: GFF TXT
spacer
spacer