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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cbr-miR-239a

166 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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CBG08563 ENSCBRT00000002851 Seven TM Receptor family member (str-178) [Source:RefSeq_peptide;Acc:NP_506176]Seven TM Receptor family member (str-178) [Source:RefSeq_peptide;Acc:NP_506176] BY ORTHOLOGY TO:R11D1.5
15.1373 -11.84 0.0000156262 1300 3 2 2 [+] picture button
CBG23762 ENSCBRT00000009337 C33E10.6 [Source:RefSeq_peptide;Acc:NP_510803]C33E10.6 [Source:RefSeq_peptide;Acc:NP_510803] BY ORTHOLOGY TO:C33E10.6
17.6585 -22.89 0.0000199221 1300 4 1 4 [+] picture button
CBG02333 ENSCBRT00000006685 Zinc metalloproteinase nas-29 precursor (EC 3.4.24.21) (Nematode astacin 29). [Source:Uniprot/SWISSPROT;Acc:Q20958]Zinc metalloproteinase nas-29 precursor (EC 3.4.24.21) (Nematode astacin 29). [Source:Uniprot/SWISSPROT;Acc:Q20958] BY ORTHOLOGY TO:F58A6.4
15.1567 -14.4 0.000112031 1300 6 1 4 [+] picture button
CBG09836 ENSCBRT00000008010 Y71H2AL.1 [Source:RefSeq_peptide;Acc:NP_497601]Y71H2AL.1 [Source:RefSeq_peptide;Acc:NP_497601] BY ORTHOLOGY TO:Y71H2AL.1
15.807 -11.75 0.000124578 1300 7 1 6 [+] picture button
CBG08630 ENSCBRT00000002966 Serpentine Receptor, class SX family member (srsx-5) [Source:RefSeq_peptide;Acc:NP_505038]Serpentine Receptor, class SX family member (srsx-5) [Source:RefSeq_peptide;Acc:NP_505038] BY ORTHOLOGY TO:Y97E10B.2
16.6999 -17.84 0.000423656 1300 6 2 6 [+] picture button
CBG01635 ENSCBRT00000005520 F15E6.2 [Source:RefSeq_peptide;Acc:NP_500538]F15E6.2 [Source:RefSeq_peptide;Acc:NP_500538] BY ORTHOLOGY TO:F15E6.2
16.0107 -14.08 0.000627198 1300 4 1 3 [+] picture button
CBG09868 ENSCBRT00000007977 K01A11.1 [Source:RefSeq_peptide;Acc:NP_497708]K01A11.1 [Source:RefSeq_peptide;Acc:NP_497708] BY ORTHOLOGY TO:K01A11.1
16.1113 -15.42 0.00105764 1300 3 1 6 [+] picture button
CBG05540 ENSCBRT00000005342 hif-1 encodes an ortholog of the mammalian hypoxia-induced factor HIF-1, and is required for survival in hypoxic environments (1% oxygen) that have no effect on wild-type C. elegans. [Source: WormBase]hif-1 encodes an ortholog of the mammalian hypoxia-induced factor HIF-1, and is required for survival in hypoxic environments (1% oxygen) that have no effect on wild-type C. elegans. [Source: WormBase] BY ORTHOLOGY TO:F38A6.3a
16.058 -15.6 0.00133689 1300 1 2 2 [+] picture button
CBG08288 ENSCBRT00000012993 Ubiquitin ligase sina (EC 6.3.2.-) (Seven in absentia protein). [Source:Uniprot/SWISSPROT;Acc:P21461]Ubiquitin ligase sina (EC 6.3.2.-) (Seven in absentia protein). [Source:Uniprot/SWISSPROT;Acc:P21461] BY ORTHOLOGY TO:CG9949-RA
15.6276 -18.92 0.00137315 1300 2 1 1 [+] picture button
CBG14386 ENSCBRT00000002784 C52B9.2b [Source:RefSeq_peptide;Acc:NP_001024483]C52B9.2b [Source:RefSeq_peptide;Acc:NP_001024483] BY ORTHOLOGY TO:C52B9.2b
15.5934 -11.97 0.001472 1300 4 2 3 [+] picture button
CBG04819 ENSCBRT00000010021 Nuclear Hormone Receptor family member (nhr-233) [Source:RefSeq_peptide;Acc:NP_507191]Nuclear Hormone Receptor family member (nhr-233) [Source:RefSeq_peptide;Acc:NP_507191] BY ORTHOLOGY TO:Y32B12B.6
15.5348 -11.55 0.00165704 1300 6 1 5 [+] picture button
CBG17637 ENSCBRT00000002180 opt-1 encodes a high-affinity, proton-coupled oligopeptide transporter. when expressed in Xenopus ooctyes, OPT-1 exhibits proton-coupled transport activity for a broad spectrum of peptide substrates. opt-1 mRNA is detected at all stages of development, but is expressed at highest levels in late larval and adult stages. additionally, an opt-1::GFP reporter exhibits expression primarily in vulval, pharyngeal, and anal muscles. as loss of opt-1 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of opt-1 in C. elegans development and/or behavior is not yet known. [Source: WormBase]opt-1 encodes a high-affinity, proton-coupled oligopeptide transporter. when expressed in Xenopus ooctyes, OPT-1 exhibits proton-coupled transport activity for a broad spectrum of peptide substrates. opt-1 mRNA is detected at all stages of development, but is expressed at highest levels in late larval and adult stages. additionally, an opt-1::GFP reporter exhibits expression primarily in vulval, pharyngeal, and anal muscles. as loss of opt-1 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of opt-1 in C. elegans development and/or behavior is not yet known. [Source: WormBase] BY ORTHOLOGY TO:C06G8.2
15.8538 -15.83 0.00166167 1300 3 1 2 [+] picture button
CBG03879 ENSCBRT00000008708 TPX2 (Targeting Protein for Xenopus Klp2)-Like family member (tpxl-1) [Source:RefSeq_peptide;Acc:NP_740805]TPX2 (Targeting Protein for Xenopus Klp2)-Like family member (tpxl-1) [Source:RefSeq_peptide;Acc:NP_740805] BY ORTHOLOGY TO:Y39G10AR.12a
15.5255 -11.22 0.00168847 1300 4 1 3 [+] picture button
CBG16653 ENSCBRT00000014656 ncr-2 encodes a homolog of human NPC1, which when mutated leads to Niemann-Pick disease, type C (OMIM:257220). [Source: WormBase]ncr-2 encodes a homolog of human NPC1, which when mutated leads to Niemann-Pick disease, type C (OMIM:257220). [Source: WormBase] BY ORTHOLOGY TO:F09G8.4
18.8453 -29.3 0.00179656 1300 4 1 5 [+] picture button
CBG14719 ENSCBRT00000006786 T22B7.7 [Source:RefSeq_peptide;Acc:NP_508954]T22B7.7 [Source:RefSeq_peptide;Acc:NP_508954] BY ORTHOLOGY TO:T22B7.7
15.5582 -20.96 0.00192561 1300 4 1 4 [+] picture button
ENSCBRT00000000276 T25D1.2 [Source:RefSeq_peptide;Acc:NP_510678]T25D1.2 [Source:RefSeq_peptide;Acc:NP_510678] BY ORTHOLOGY TO:T25D1.2
18.2874 -12.46 0.00196316 1300 8 1 12 [+] picture button
CBG22950 ENSCBRT00000008776 Probable G-protein coupled receptor C06G4.5. [Source:Uniprot/SWISSPROT;Acc:P34311]Probable G-protein coupled receptor C06G4.5. [Source:Uniprot/SWISSPROT;Acc:P34311] BY ORTHOLOGY TO:C06G4.5
15.7463 -17.1 0.00199965 1300 4 1 4 [+] picture button
CBG17563 ENSCBRT00000002114 F47B10.5 [Source:RefSeq_peptide;Acc:NP_509817]F47B10.5 [Source:RefSeq_peptide;Acc:NP_509817] BY ORTHOLOGY TO:F47B10.5
15.7674 -15.17 0.00212386 1300 2 2 2 [+] picture button
CBG23119 ENSCBRT00000012030 T19C4.1 [Source:RefSeq_peptide;Acc:NP_505835]T19C4.1 [Source:RefSeq_peptide;Acc:NP_505835] BY ORTHOLOGY TO:T19C4.1
16.7012 -19.89 0.00213457 1300 3 1 3 [+] picture button
CBG08085 ENSCBRT00000003534 arr-1 encodes the C. elegans beta-arrestin ortholog (OMIM:107940, 107941, mice lacking beta-arrestin family members display defects in G protein-coupled receptor desensitization). by homology, ARR-1 is predicted to be a multifunctional adaptor protein that interacts with intracellular signaling molecules as well as activated and phosphorylated G protein-coupled and TGF-beta receptors to: 1) downregulate receptor signaling, 2) promote receptor endocytosis, and 3) activate MAP kinase- and Src-dependent signaling pathways. in C. elegans, loss of arr-1 function via mutation or RNAi does not result in any obvious abnormalities and, in particular, does not appear to affect chemosensation or odorant discrimination. however, animals doubly mutant for arr-1 and grk-2, which encodes a G protein-coupled receptor kinase, are sick and slow growing. an arr-1 transcriptional reporter is expressed in neurons, including the ASH chemosensory neurons, and in the intestine [Source: WormBase]arr-1 encodes the C. elegans beta-arrestin ortholog (OMIM:107940, 107941, mice lacking beta-arrestin family members display defects in G protein-coupled receptor desensitization). by homology, ARR-1 is predicted to be a multifunctional adaptor protein that interacts with intracellular signaling molecules as well as activated and phosphorylated G protein-coupled and TGF-beta receptors to: 1) downregulate receptor signaling, 2) promote receptor endocytosis, and 3) activate MAP kinase- and Src-dependent signaling pathways. in C. elegans, loss of arr-1 function via mutation or RNAi does not result in any obvious abnormalities and, in particular, does not appear to affect chemosensation or odorant discrimination. however, animals doubly mutant for arr-1 and grk-2, which encodes a G protein-coupled receptor kinase, are sick and slow growing. an arr-1 transcriptional reporter is expressed in neurons, including the ASH chemosensory neurons, and in the intestine [Source: WormBase] BY ORTHOLOGY TO:F53H8.2
16.3018 -18.99 0.0022017 1300 4 1 5 [+] picture button
CBG18046 ENSCBRT00000003129 Mitochondrial 28S ribosomal protein S34 (S34mt) (MRP-S34). [Source:Uniprot/SWISSPROT;Acc:P82930]Mitochondrial 28S ribosomal protein S34 (S34mt) (MRP-S34). [Source:Uniprot/SWISSPROT;Acc:P82930] BY ORTHOLOGY TO:ENSMODT00000020507
15.482 -20.86 0.00224402 1300 2 1 1 [+] picture button
CBG21313 ENSCBRT00000000755 MGC10433 protein. [Source:Uniprot/SPTREMBL;Acc:Q9BU66]MGC10433 protein. [Source:Uniprot/SPTREMBL;Acc:Q9BU66] BY ORTHOLOGY TO:ENST00000262633
16.5352 -18.1 0.00237688 1300 2 1 3 [+] picture button
CBG05490 ENSCBRT00000004847 nlp-16 encodes a predicted neuropeptide that does not belong to a multigene family in C. elegans and is not clearly related to well-characterized neuropeptides. the peptide encoded by nlp-16 has been isolated from Ascaris suum. [Source: WormBase]nlp-16 encodes a predicted neuropeptide that does not belong to a multigene family in C. elegans and is not clearly related to well-characterized neuropeptides. the peptide encoded by nlp-16 has been isolated from Ascaris suum. [Source: WormBase] BY ORTHOLOGY TO:T13A10.5a
15.5824 -10.85 0.00270633 1300 9 2 12 [+] picture button
CBG18365 ENSCBRT00000001586 UNCoordinated family member (unc-49) [Source:RefSeq_peptide;Acc:NP_001022781]UNCoordinated family member (unc-49) [Source:RefSeq_peptide;Acc:NP_001022781] BY ORTHOLOGY TO:T21C12.1a
15.4792 -13.64 0.0027795 1300 10 1 14 [+] picture button
CBG04323 ENSCBRT00000007693 Serpentine receptor class alpha-31 (Protein sra-31). [Source:Uniprot/SWISSPROT;Acc:Q18881]Serpentine receptor class alpha-31 (Protein sra-31). [Source:Uniprot/SWISSPROT;Acc:Q18881] BY ORTHOLOGY TO:C56C10.5
15.247 -15.21 0.00294922 1300 6 1 6 [+] picture button
CBG06939 ENSCBRT00000007388 The ced-11 gene encodes a predicted transmembrane ion channel related to the long transient receptor potential channel (LTRPC) subfamily of TRP channels found in Drosophila and mammals. CED-11 functions as a downstream effector in the programmed cell death pathway and may play a role in affecting the morphological changes seen in the nucleus, cytoplasm, and plasma membrane of apoptotic cells. [Source: WormBase]The ced-11 gene encodes a predicted transmembrane ion channel related to the long transient receptor potential channel (LTRPC) subfamily of TRP channels found in Drosophila and mammals. CED-11 functions as a downstream effector in the programmed cell death pathway and may play a role in affecting the morphological changes seen in the nucleus, cytoplasm, and plasma membrane of apoptotic cells. [Source: WormBase] BY ORTHOLOGY TO:ZK512.3
15.2437 -22.18 0.00296836 1300 3 1 2 [+] picture button
CBG23267 ENSCBRT00000012290 F55A11.7 [Source:RefSeq_peptide;Acc:NP_505973]F55A11.7 [Source:RefSeq_peptide;Acc:NP_505973] BY ORTHOLOGY TO:F55A11.7
15.6331 -13.51 0.00300123 1300 2 1 2 [+] picture button
CBG06765 ENSCBRT00000009620 Homeobox protein SIX4 (Sine oculis homeobox homolog 4). [Source:Uniprot/SWISSPROT;Acc:Q9UIU6]Homeobox protein SIX4 (Sine oculis homeobox homolog 4). [Source:Uniprot/SWISSPROT;Acc:Q9UIU6] BY ORTHOLOGY TO:ENST00000216513
15.2344 -8.77 0.00302368 1300 4 1 3 [+] picture button
CBG19837 ENSCBRT00000002401 Serpentine Receptor, class V family member (srv-19) [Source:RefSeq_peptide;Acc:NP_500878]Serpentine Receptor, class V family member (srv-19) [Source:RefSeq_peptide;Acc:NP_500878] BY ORTHOLOGY TO:H04M03.6
15.2266 -8.73 0.00307063 1300 9 1 8 [+] picture button
CBG02445 ENSCBRT00000006537 T25E4.1 [Source:RefSeq_peptide;Acc:NP_495080]T25E4.1 [Source:RefSeq_peptide;Acc:NP_495080] BY ORTHOLOGY TO:T25E4.1
15.9137 -18.3 0.00314155 1300 5 2 5 [+] picture button
CBG02443 ENSCBRT00000006539 C17C3.1a [Source:RefSeq_peptide;Acc:NP_495075]C17C3.1a [Source:RefSeq_peptide;Acc:NP_495075] BY ORTHOLOGY TO:C17C3.1a
15.729 -12.68 0.003173 1300 3 1 3 [+] picture button
CBG19709 ENSCBRT00000000317 Quinone oxidoreductase (EC 1.6.5.5) (NADPH:quinone reductase) (Zeta- crystallin). [Source:Uniprot/SWISSPROT;Acc:Q08257]Quinone oxidoreductase (EC 1.6.5.5) (NADPH:quinone reductase) (Zeta- crystallin). [Source:Uniprot/SWISSPROT;Acc:Q08257] BY ORTHOLOGY TO:ENSMODT00000024240
15.701 -13.55 0.00360443 1300 3 1 3 [+] picture button
CBG08549 ENSCBRT00000002862 W05B10.3 [Source:RefSeq_peptide;Acc:NP_506165]W05B10.3 [Source:RefSeq_peptide;Acc:NP_506165] BY ORTHOLOGY TO:W05B10.3
15.6226 -15.11 0.00360443 1300 2 1 2 [+] picture button
CBG09879 ENSCBRT00000008076 UPF0049 protein ZK1128.2. [Source:Uniprot/SWISSPROT;Acc:Q09357]UPF0049 protein ZK1128.2. [Source:Uniprot/SWISSPROT;Acc:Q09357] BY ORTHOLOGY TO:ZK1128.2b
15.1374 -15.73 0.00366252 1300 2 1 1 [+] picture button
CBG07420 ENSCBRT00000011077 R01E6.7 [Source:RefSeq_peptide;Acc:NP_510269]R01E6.7 [Source:RefSeq_peptide;Acc:NP_510269] BY ORTHOLOGY TO:R01E6.7
15.4814 -11.58 0.00389273 1300 1 2 1 [+] picture button
CBG09614 ENSCBRT00000005836 F15H10.6 [Source:RefSeq_peptide;Acc:NP_505675]F15H10.6 [Source:RefSeq_peptide;Acc:NP_505675] BY ORTHOLOGY TO:F15H10.6
15.776 -8.81 0.00398614 1300 6 1 5 [+] picture button
CBG14679 ENSCBRT00000006845 C03F11.2 [Source:RefSeq_peptide;Acc:NP_508918]C03F11.2 [Source:RefSeq_peptide;Acc:NP_508918] BY ORTHOLOGY TO:C03F11.2
15.0826 -16.68 0.00407864 1300 4 1 4 [+] picture button
CBG11145 ENSCBRT00000014473 F41G3.3 [Source:RefSeq_peptide;Acc:NP_495382]F41G3.3 [Source:RefSeq_peptide;Acc:NP_495382] BY ORTHOLOGY TO:F41G3.3
15.276 -11.3 0.0040877 1300 3 1 2 [+] picture button
CBG17385 ENSCBRT00000001164 C03A3.3 [Source:RefSeq_peptide;Acc:NP_509880]C03A3.3 [Source:RefSeq_peptide;Acc:NP_509880] BY ORTHOLOGY TO:C03A3.3
16.173 -17.52 0.00423554 1300 5 1 4 [+] picture button
CBG19233 ENSCBRT00000013438 F07C3.2 [Source:RefSeq_peptide;Acc:NP_505390]F07C3.2 [Source:RefSeq_peptide;Acc:NP_505390] BY ORTHOLOGY TO:F07C3.2
15.4494 -12.19 0.00429803 1300 2 2 3 [+] picture button
CBG18914 ENSCBRT00000014166 T28C12.6 [Source:RefSeq_peptide;Acc:NP_504618]T28C12.6 [Source:RefSeq_peptide;Acc:NP_504618] BY ORTHOLOGY TO:T28C12.6
15.6226 -18.13 0.00442976 1300 4 1 3 [+] picture button
CBG24900 ENSCBRT00000012465 F44D12.8 [Source:RefSeq_peptide;Acc:NP_501809]F44D12.8 [Source:RefSeq_peptide;Acc:NP_501809] BY ORTHOLOGY TO:F44D12.8
16.2909 -8.89 0.00450422 1300 6 1 7 [+] picture button
CBG11247 ENSCBRT00000014518 F52E1.2 [Source:RefSeq_peptide;Acc:NP_505170]F52E1.2 [Source:RefSeq_peptide;Acc:NP_505170] BY ORTHOLOGY TO:F52E1.2
15.6331 -13.18 0.00466873 1300 4 1 3 [+] picture button
CBG17433 ENSCBRT00000001199 grd-1 encodes a hedgehog-like protein, with (from N- to C-terminus) a signal sequence, a Ground domain, an extended region of low-complexity sequence, and a Hint/Hog domain. GRD-1 is expressed in rectal cells. the Hint/Hog domain is predicted to cut GRD-1 into two halves and then covalently link cholesterol to the C-terminus of the Ground domain. the Ground domain is predicted to form a cysteine-crosslinked protein involved in intercellular signalling, and it has subtle similarity to the N-terminal Hedge domain of HEDGEHOG proteins. GRD-1 is weakly required for normal molting. GRD-1 is also required for normal growth to full size, cuticle adhesion, and male tail development. all of these requirements may reflect common defects in cholesterol-dependent hedgehog-like signalling or in vesicle trafficking. [Source: WormBase]grd-1 encodes a hedgehog-like protein, with (from N- to C-terminus) a signal sequence, a Ground domain, an extended region of low-complexity sequence, and a Hint/Hog domain. GRD-1 is expressed in rectal cells. the Hint/Hog domain is predicted to cut GRD-1 into two halves and then covalently link cholesterol to the C-terminus of the Ground domain. the Ground domain is predicted to form a cysteine-crosslinked protein involved in intercellular signalling, and it has subtle similarity to the N-terminal Hedge domain of HEDGEHOG proteins. GRD-1 is weakly required for normal molting. GRD-1 is also required for normal growth to full size, cuticle adhesion, and male tail development. all of these requirements may reflect common defects in cholesterol-dependent hedgehog-like signalling or in vesicle trafficking. [Source: WormBase] BY ORTHOLOGY TO:R08B4.1a
15.8273 -14.9 0.00466873 1300 3 1 2 [+] picture button
CBG15949 ENSCBRT00000014230 Expression experimentally verified by RT-PCR. [Source: WormBase]Expression experimentally verified by RT-PCR. [Source: WormBase] BY ORTHOLOGY TO:B0302.1c
15.3406 -19.85 0.00478101 1300 5 1 5 [+] picture button
CBG17370 ENSCBRT00000001154 vhl-1 is orthologous to the mammalian tumor suppressor gene Von Hippel-Landau syndrome (VHL. OMIM:193300), which is part of a ubiquitylation complex targetting proteins for proteasomal degradation. [Source: WormBase]vhl-1 is orthologous to the mammalian tumor suppressor gene Von Hippel-Landau syndrome (VHL. OMIM:193300), which is part of a ubiquitylation complex targetting proteins for proteasomal degradation. [Source: WormBase] BY ORTHOLOGY TO:F08G12.4
15.3315 -19.2 0.00486845 1300 3 1 3 [+] picture button
CBG04549 ENSCBRT00000010425 One IG domain family member (oig-3) [Source:RefSeq_peptide;Acc:NP_506637]One IG domain family member (oig-3) [Source:RefSeq_peptide;Acc:NP_506637] BY ORTHOLOGY TO:Y50E8A.3
15.7196 -12.05 0.00504659 1300 2 1 2 [+] picture button
CBG03921 ENSCBRT00000010020 C06A5.3a [Source:RefSeq_peptide;Acc:NP_491732]C06A5.3a [Source:RefSeq_peptide;Acc:NP_491732] BY ORTHOLOGY TO:C06A5.3a
15.2902 -13.33 0.00528069 1300 4 1 6 [+] picture button
CBG22724 ENSCBRT00000004221 conserved hypothetical proteinconserved hypothetical protein BY ORTHOLOGY TO:AAEL001818-RA
15.5255 -18.02 0.00551727 1300 3 2 4 [+] picture button
CBG16265 ENSCBRT00000012638 E01G6.2 [Source:RefSeq_peptide;Acc:NP_510043]E01G6.2 [Source:RefSeq_peptide;Acc:NP_510043] BY ORTHOLOGY TO:E01G6.2
15.7809 -17.75 0.00555069 1300 3 1 3 [+] picture button

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