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Target Listing


Download table: GFF TXT

Highlighted rows in the table indicate genes with published known targets

All miRNA hits for Caenorhabditis briggsae and cbr-miR-232

139 hits found.


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Gene Name Transcript Description GO Terms Score Energy P-value Length Total Sites No. Cons Species No. miRNAs
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ENSCBRT00000004836 Y46G5A.10 [Source:RefSeq_peptide;Acc:NP_496715]Y46G5A.10 [Source:RefSeq_peptide;Acc:NP_496715] BY ORTHOLOGY TO:Y46G5A.10
15.877 -11.71 0.0000582849 1300 9 1 5 [+] picture button
CBG04128 ENSCBRT00000010048 crs-1 encodes a predicted cytoplasmic cysteinyl-tRNA synthetase (CysRS), a class I aminoacyl-tRNA synthetase that catalyzes the attachment of cysteine to its cognate tRNA and is thus required for protein biosynthesis. CRS-1 is essential for embryonic and larval development, and is required for molting and a normal rate of postembryonic development. [Source: WormBase]crs-1 encodes a predicted cytoplasmic cysteinyl-tRNA synthetase (CysRS), a class I aminoacyl-tRNA synthetase that catalyzes the attachment of cysteine to its cognate tRNA and is thus required for protein biosynthesis. CRS-1 is essential for embryonic and larval development, and is required for molting and a normal rate of postembryonic development. [Source: WormBase] BY ORTHOLOGY TO:Y23H5A.7b
18.5536 -12.33 0.000188842 1300 10 1 14 [+] picture button
CBG00929 ENSCBRT00000003964 Serpentine receptor class delta-2 (Protein srd-2). [Source:Uniprot/SWISSPROT;Acc:Q21767]Serpentine receptor class delta-2 (Protein srd-2). [Source:Uniprot/SWISSPROT;Acc:Q21767] BY ORTHOLOGY TO:R05H5.1
17.2637 -11.98 0.00024271 1300 5 1 6 [+] picture button
CBG03024 ENSCBRT00000007036 Hypothetical protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:A1L275]Hypothetical protein (Fragment). [Source:Uniprot/SPTREMBL;Acc:A1L275] BY ORTHOLOGY TO:ENSDART00000046224
16.2354 -14.91 0.00142132 1300 2 1 2 [+] picture button
CBG15889 ENSCBRT00000011026 F22F7.6 [Source:RefSeq_peptide;Acc:NP_503575]F22F7.6 [Source:RefSeq_peptide;Acc:NP_503575] BY ORTHOLOGY TO:F22F7.6
16.8406 -21.74 0.00170268 1300 5 1 6 [+] picture button
CBG21923 ENSCBRT00000008203 The unc-14 gene encodes an activity required for both axonogenesis and sex myoblast migration. [Source: WormBase]The unc-14 gene encodes an activity required for both axonogenesis and sex myoblast migration. [Source: WormBase] BY ORTHOLOGY TO:K10D3.2
16.1743 -15.24 0.00178679 1300 4 2 4 [+] picture button
CBG18969 ENSCBRT00000014130 K04A8.3 [Source:RefSeq_peptide;Acc:NP_504667]K04A8.3 [Source:RefSeq_peptide;Acc:NP_504667] BY ORTHOLOGY TO:K04A8.3
16.1077 -14.72 0.00182644 1300 1 2 1 [+] picture button
CBG22922 ENSCBRT00000008761 Polymerase (DNA directed) kappa. [Source:Uniprot/SPTREMBL;Acc:Q6DJA4]Polymerase (DNA directed) kappa. [Source:Uniprot/SPTREMBL;Acc:Q6DJA4] BY ORTHOLOGY TO:ENSXETT00000011088
16.1702 -14.33 0.00186552 1300 2 2 2 [+] picture button
CBG13276 ENSCBRT00000001062 Y66D12A.24 [Source:RefSeq_peptide;Acc:NP_499479]Y66D12A.24 [Source:RefSeq_peptide;Acc:NP_499479] BY ORTHOLOGY TO:Y66D12A.24
17.109 -21.12 0.00215406 1300 4 2 4 [+] picture button
CBG09316 ENSCBRT00000006331 CYclophyliN family member (cyn-17) [Source:RefSeq_peptide;Acc:NP_504522]CYclophyliN family member (cyn-17) [Source:RefSeq_peptide;Acc:NP_504522] BY ORTHOLOGY TO:ZC250.1
15.9328 -16.36 0.00219475 1300 5 1 4 [+] picture button
CBG07007 ENSCBRT00000012383 F23F1.6 [Source:RefSeq_peptide;Acc:NP_493642]F23F1.6 [Source:RefSeq_peptide;Acc:NP_493642] BY ORTHOLOGY TO:F23F1.6
16.6899 -19.58 0.00227743 1300 3 2 2 [+] picture button
CBG14956 ENSCBRT00000004428 The sep-1 gene encodes a homolog of separase, a protease that splits segregating chromosomes at their centromeres during anaphase by proteolyzing the Scc1 subunit of cohesin. [Source: WormBase]The sep-1 gene encodes a homolog of separase, a protease that splits segregating chromosomes at their centromeres during anaphase by proteolyzing the Scc1 subunit of cohesin. [Source: WormBase] BY ORTHOLOGY TO:Y47G6A.12
15.8166 -13.31 0.00227743 1300 3 1 3 [+] picture button
CBG07422 ENSCBRT00000011082 R01E6.6 [Source:RefSeq_peptide;Acc:NP_510267]R01E6.6 [Source:RefSeq_peptide;Acc:NP_510267] BY ORTHOLOGY TO:R01E6.6
16.787 -20.76 0.00227743 1300 5 1 4 [+] picture button
CBG02575 ENSCBRT00000007557 C29H12.6 [Source:RefSeq_peptide;Acc:NP_495225]C29H12.6 [Source:RefSeq_peptide;Acc:NP_495225] BY ORTHOLOGY TO:C29H12.6
15.9244 -16.02 0.00273803 1300 3 1 3 [+] picture button
CBG02385 ENSCBRT00000006623 Serine/threonine-protein kinase PINK1, mitochondrial precursor (EC 2.7.11.1) (PTEN-induced putative kinase protein 1) (BRPK). [Source:Uniprot/SWISSPROT;Acc:Q9BXM7]Serine/threonine-protein kinase PINK1, mitochondrial precursor (EC 2.7.11.1) (PTEN-induced putative kinase protein 1) (BRPK). [Source:Uniprot/SWISSPROT;Acc:Q9BXM7] BY ORTHOLOGY TO:ENSORLT00000020036
15.7196 -17.22 0.00275454 1300 5 1 4 [+] picture button
CBG17885 ENSCBRT00000000432 UNCoordinated family member (unc-34) [Source:RefSeq_peptide;Acc:NP_503360]UNCoordinated family member (unc-34) [Source:RefSeq_peptide;Acc:NP_503360] BY ORTHOLOGY TO:Y50D4C.1a
16.2832 -17.43 0.0028245 1300 1 1 1 [+] picture button
CBG06965 ENSCBRT00000012279 UDP-N-acetylglucosamine transporter (Golgi UDP-GlcNAc transporter) (Solute carrier family 35 member A3). [Source:Uniprot/SWISSPROT;Acc:Q6AXR5]UDP-N-acetylglucosamine transporter (Golgi UDP-GlcNAc transporter) (Solute carrier family 35 member A3). [Source:Uniprot/SWISSPROT;Acc:Q6AXR5] BY ORTHOLOGY TO:ENSRNOT00000021676
15.8465 -12.52 0.00287172 1300 3 1 3 [+] picture button
CBG23211 ENSCBRT00000012172 Zinc metalloproteinase nas-20 precursor (EC 3.4.24.21) (Nematode astacin 20). [Source:Uniprot/SWISSPROT;Acc:Q22396]Zinc metalloproteinase nas-20 precursor (EC 3.4.24.21) (Nematode astacin 20). [Source:Uniprot/SWISSPROT;Acc:Q22396] BY ORTHOLOGY TO:T11F9.3
16.5682 -14.22 0.00295333 1300 4 1 3 [+] picture button
CBG08327 ENSCBRT00000012961 TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:MarkerSymbol;Acc:MGI:2443028]TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Source:MarkerSymbol;Acc:MGI:2443028] BY ORTHOLOGY TO:ENSMUST00000041733
15.9103 -10.5 0.00351418 1300 5 1 5 [+] picture button
CBG02079 ENSCBRT00000004165 H01M10.2 [Source:RefSeq_peptide;Acc:NP_508467]H01M10.2 [Source:RefSeq_peptide;Acc:NP_508467] BY ORTHOLOGY TO:H01M10.2
16.6999 -10.8 0.00394362 1300 3 1 2 [+] picture button
CBG03817 ENSCBRT00000008668 CAAX prenyl protease 1 homolog (EC 3.4.24.84) (Prenyl protein-specific endoprotease 1) (Farnesylated proteins-converting enzyme 1) (FACE-1) (Zinc metalloproteinase Ste24 homolog). [Source:Uniprot/SWISSPROT;Acc:O75844]CAAX prenyl protease 1 homolog (EC 3.4.24.84) (Prenyl protein-specific endoprotease 1) (Farnesylated proteins-converting enzyme 1) (FACE-1) (Zinc metalloproteinase Ste24 homolog). [Source:Uniprot/SWISSPROT;Acc:O75844] BY ORTHOLOGY TO:ENSORLT00000018327
15.4377 -12.81 0.00394362 1300 2 1 1 [+] picture button
CBG19424 ENSCBRT00000012820 family with sequence similarity 82, member C [Source:RefSeq_peptide;Acc:NP_060615]family with sequence similarity 82, member C [Source:RefSeq_peptide;Acc:NP_060615] BY ORTHOLOGY TO:ENSPTRT00000012776
15.7196 -18.34 0.00400784 1300 2 1 2 [+] picture button
CBG00393 ENSCBRT00000001977 C49C3.11 [Source:RefSeq_peptide;Acc:NP_503089]C49C3.11 [Source:RefSeq_peptide;Acc:NP_503089] BY ORTHOLOGY TO:C49C3.11
15.6226 -15.56 0.00445238 1300 2 1 2 [+] picture button
CBG05359 ENSCBRT00000002802 C-type LECtin family member (clec-78) [Source:RefSeq_peptide;Acc:NP_500454]C-type LECtin family member (clec-78) [Source:RefSeq_peptide;Acc:NP_500454] BY ORTHOLOGY TO:F47C12.2
15.3512 -11.56 0.00466291 1300 3 1 2 [+] picture button
CBG14222 ENSCBRT00000002667 wrt-6 encodes a hedgehog-like protein, with (from N- to C-terminus) a signal sequence, a Wart domain, an short region of low-complexity sequence, and a Hint/Hog domain. WRT-6 is expressed in sheath and socket cells of anterior sensilla, seam cells, and hypodermis. the Hint/Hog domain is predicted to cut WRT-6 into two halves and then covalently link cholesterol to the C-terminus of the Wart domain. the Wart domain is predicted to form a cysteine-crosslinked protein involved in intercellular signalling, and it has subtle similarity to the N-terminal Hedge domain of HEDGEHOG proteins. WRT-6 is weakly required for normal molting. WRT-6 is also required for normal growth to full size and locomotion. all of these requirements may reflect common defects in cholesterol-dependent hedgehog-like signalling or in vesicle trafficking. [Source: WormBase]wrt-6 encodes a hedgehog-like protein, with (from N- to C-terminus) a signal sequence, a Wart domain, an short region of low-complexity sequence, and a Hint/Hog domain. WRT-6 is expressed in sheath and socket cells of anterior sensilla, seam cells, and hypodermis. the Hint/Hog domain is predicted to cut WRT-6 into two halves and then covalently link cholesterol to the C-terminus of the Wart domain. the Wart domain is predicted to form a cysteine-crosslinked protein involved in intercellular signalling, and it has subtle similarity to the N-terminal Hedge domain of HEDGEHOG proteins. WRT-6 is weakly required for normal molting. WRT-6 is also required for normal growth to full size and locomotion. all of these requirements may reflect common defects in cholesterol-dependent hedgehog-like signalling or in vesicle trafficking. [Source: WormBase] BY ORTHOLOGY TO:ZK377.1
15.7257 -18.4 0.00469787 1300 4 2 3 [+] picture button
CBG08637 ENSCBRT00000002968 Na/Ca eXchangers family member (ncx-9) [Source:RefSeq_peptide;Acc:NP_504342]Na/Ca eXchangers family member (ncx-9) [Source:RefSeq_peptide;Acc:NP_504342] BY ORTHOLOGY TO:C13D9.8
16.1174 -8.95 0.00487376 1300 2 1 2 [+] picture button
CBG22739 ENSCBRT00000004227 inx-5 encodes a predicted member of the innexin family. expressed in the embryonic hypodermis, developing vulva, seam cells, and spermatheca. [Source: WormBase]inx-5 encodes a predicted member of the innexin family. expressed in the embryonic hypodermis, developing vulva, seam cells, and spermatheca. [Source: WormBase] BY ORTHOLOGY TO:R09F10.4
15.5824 -6.49 0.00503517 1300 3 2 3 [+] picture button
CBG14328 ENSCBRT00000002756 R02E12.2a [Source:RefSeq_peptide;Acc:NP_001024819]R02E12.2a [Source:RefSeq_peptide;Acc:NP_001024819] BY ORTHOLOGY TO:R02E12.2a
16.0834 -14.84 0.00510934 1300 2 1 2 [+] picture button
ENSCBRT00000005957 C51E3.9 [Source:RefSeq_peptide;Acc:NP_741613]C51E3.9 [Source:RefSeq_peptide;Acc:NP_741613] BY ORTHOLOGY TO:C51E3.9
15.562 -16.7 0.00525893 1300 3 2 3 [+] picture button
CBG18315 ENSCBRT00000001631 The hpl-2 gene encodes a homolog of heterochromatin protein 1 (HP1) which is required for germline function, silencing of transgenes in the germline, and vulval development. [Source: WormBase]The hpl-2 gene encodes a homolog of heterochromatin protein 1 (HP1) which is required for germline function, silencing of transgenes in the germline, and vulval development. [Source: WormBase] BY ORTHOLOGY TO:K01G5.2c
16.5641 -15.99 0.00553703 1300 7 1 9 [+] picture button
CBG15197 ENSCBRT00000010379 Coatomer subunit delta (Delta-coat protein) (Delta-COP) (Archain). [Source:Uniprot/SWISSPROT;Acc:P48444]Coatomer subunit delta (Delta-coat protein) (Delta-COP) (Archain). [Source:Uniprot/SWISSPROT;Acc:P48444] BY ORTHOLOGY TO:ENSOANT00000005959
15.4671 -19.85 0.00653407 1300 2 1 2 [+] picture button
CBG04117 ENSCBRT00000010085 Y71F9B.8 [Source:RefSeq_peptide;Acc:NP_491035]Y71F9B.8 [Source:RefSeq_peptide;Acc:NP_491035] BY ORTHOLOGY TO:Y71F9B.8
17.8953 -19.59 0.00664157 1300 7 2 14 [+] picture button
ENSCBRT00000009654 W02H5.1 [Source:RefSeq_peptide;Acc:NP_503723]W02H5.1 [Source:RefSeq_peptide;Acc:NP_503723] BY ORTHOLOGY TO:W02H5.1
16.148 -18.96 0.00770086 1300 5 1 5 [+] picture button
CBG10819 ENSCBRT00000012515 ZC581.7 [Source:RefSeq_peptide;Acc:NP_491913]ZC581.7 [Source:RefSeq_peptide;Acc:NP_491913] BY ORTHOLOGY TO:ZC581.7
15.5407 -11.01 0.00770086 1300 2 1 2 [+] picture button
CBG14473 ENSCBRT00000003529 Niemann-Pick C1 protein precursor. [Source:Uniprot/SWISSPROT;Acc:O15118]Niemann-Pick C1 protein precursor. [Source:Uniprot/SWISSPROT;Acc:O15118] BY ORTHOLOGY TO:ENSOANT00000019309
15.5372 -11.3 0.00796079 1300 4 2 7 [+] picture button
CBG13154 ENSCBRT00000000122 Serpentine Receptor, class E (epsilon) family member (sre-3) [Source:RefSeq_peptide;Acc:NP_495548]Serpentine Receptor, class E (epsilon) family member (sre-3) [Source:RefSeq_peptide;Acc:NP_495548] BY ORTHOLOGY TO:C07D10.3
15.4435 -10.98 0.00796384 1300 3 1 3 [+] picture button
CBG16265 ENSCBRT00000012638 E01G6.2 [Source:RefSeq_peptide;Acc:NP_510043]E01G6.2 [Source:RefSeq_peptide;Acc:NP_510043] BY ORTHOLOGY TO:E01G6.2
15.6835 -14.84 0.00848187 1300 3 1 3 [+] picture button
CBG03894 ENSCBRT00000008723 Novel protein similar to vertebrate myeloid/lymphoid or mixed-lineage leukemia (Trithorax homolog, Drosophila); translocated to, 4 (MLLT4) (Fragment). [Source:Uniprot/SPTREMBL;Acc:A3QJV8]Novel protein similar to vertebrate myeloid/lymphoid or mixed-lineage leukemia (Trithorax homolog, Drosophila); translocated to, 4 (MLLT4) (Fragment). [Source:Uniprot/SPTREMBL;Acc:A3QJV8] BY ORTHOLOGY TO:ENSDART00000039754
15.3511 -15.11 0.00855928 1300 1 2 1 [+] picture button
CBG05504 ENSCBRT00000004831 C49A9.7 [Source:RefSeq_peptide;Acc:NP_500930]C49A9.7 [Source:RefSeq_peptide;Acc:NP_500930] BY ORTHOLOGY TO:C49A9.7
15.37 -12.4 0.00873286 1300 6 2 7 [+] picture button
CBG21708 ENSCBRT00000004579 F49C12.9 [Source:RefSeq_peptide;Acc:NP_501631]F49C12.9 [Source:RefSeq_peptide;Acc:NP_501631] BY ORTHOLOGY TO:F49C12.9
17.4369 -22.84 0.0106697 1300 1 1 1 [+] picture button
CBG13861 ENSCBRT00000012461 Y57G11C.38 [Source:RefSeq_peptide;Acc:NP_872094]Y57G11C.38 [Source:RefSeq_peptide;Acc:NP_872094] BY ORTHOLOGY TO:Y57G11C.38
17.354 -16.89 0.0116223 1300 4 1 5 [+] picture button
CBG14096 ENSCBRT00000002553 F49H12.3 [Source:RefSeq_peptide;Acc:NP_508383]F49H12.3 [Source:RefSeq_peptide;Acc:NP_508383] BY ORTHOLOGY TO:F49H12.3
17.3422 -15.39 0.0117644 1300 5 1 5 [+] picture button
CBG22377 ENSCBRT00000004941 sas-6 encodes a protein that contains a coiled-coil region and a novel PISA (present in SAS-6) motif which is conserved in similar proteins in at least eight other species that contain basal bodies or centrioles. SAS-6 activity, along with that of ZYG-1, SAS-4, SAS-5, and SPD-2, is essential for centriole duplication. SAS-6 functions in a dose-dependent manner and localizes to centriolar cylinders. SAS-6 co-localizes to centrioles with SAS-4 and SAS-5, and is mutually dependent upon SAS-5, with which it interacts physically, for centriolar localization. SAS-6 localization also requires the activity of the ZYG-1 kinase. in addition to the early embryo, SAS-6 is also detected in sperm. [Source: WormBase]sas-6 encodes a protein that contains a coiled-coil region and a novel PISA (present in SAS-6) motif which is conserved in similar proteins in at least eight other species that contain basal bodies or centrioles. SAS-6 activity, along with that of ZYG-1, SAS-4, SAS-5, and SPD-2, is essential for centriole duplication. SAS-6 functions in a dose-dependent manner and localizes to centriolar cylinders. SAS-6 co-localizes to centrioles with SAS-4 and SAS-5, and is mutually dependent upon SAS-5, with which it interacts physically, for centriolar localization. SAS-6 localization also requires the activity of the ZYG-1 kinase. in addition to the early embryo, SAS-6 is also detected in sperm. [Source: WormBase] BY ORTHOLOGY TO:Y45F10D.9
17.3186 -14.72 0.0120535 1300 3 1 4 [+] picture button
CBG05582 ENSCBRT00000005398 W07A8.2a [Source:RefSeq_peptide;Acc:NP_508000]W07A8.2a [Source:RefSeq_peptide;Acc:NP_508000] BY ORTHOLOGY TO:W07A8.2a
17.2733 -14.72 0.012629 1300 2 1 2 [+] picture button
CBG08056 ENSCBRT00000003459 Dopamine receptor 4. [Source:Uniprot/SWISSPROT;Acc:Q18775]Dopamine receptor 4. [Source:Uniprot/SWISSPROT;Acc:Q18775] BY ORTHOLOGY TO:C52B11.3
17.2665 -17.15 0.0127185 1300 2 1 2 [+] picture button
CBG03329 ENSCBRT00000007092 Membrane-associated protein Hem (dHem-2). [Source:Uniprot/SWISSPROT;Acc:P55162]Membrane-associated protein Hem (dHem-2). [Source:Uniprot/SWISSPROT;Acc:P55162] BY ORTHOLOGY TO:CG5837-RA
17.2664 -16 0.0127202 1300 6 1 7 [+] picture button
CBG13421 ENSCBRT00000009517 apn-1 encodes a member of the AP (apurinic or apyrimidinic) endonuclease family. [Source: WormBase]apn-1 encodes a member of the AP (apurinic or apyrimidinic) endonuclease family. [Source: WormBase] BY ORTHOLOGY TO:T05H10.2
15.2664 -10.76 0.01279 1300 2 1 2 [+] picture button
CBG11726 ENSCBRT00000004119 M01G5.1 [Source:RefSeq_peptide;Acc:NP_497413]M01G5.1 [Source:RefSeq_peptide;Acc:NP_497413] BY ORTHOLOGY TO:M01G5.1
15.346 -10.46 0.0136896 1300 2 1 2 [+] picture button
CBG19370 ENSCBRT00000013552 F46B6.2 [Source:RefSeq_peptide;Acc:NP_505520]F46B6.2 [Source:RefSeq_peptide;Acc:NP_505520] BY ORTHOLOGY TO:F46B6.2
17.1751 -25.36 0.0139725 1300 3 1 4 [+] picture button
CBG12331 ENSCBRT00000013088 K07F5.8 [Source:RefSeq_peptide;Acc:NP_501766]K07F5.8 [Source:RefSeq_peptide;Acc:NP_501766] BY ORTHOLOGY TO:K07F5.8
17.1034 -14.77 0.0150409 1300 6 1 6 [+] picture button

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