ENA Facilities Day, 2017

Venue:
European Bioinformatics Institute,
Cambridge
CB10 1SD
United Kingdom
See map: Google Maps

Date:
Wednesday 25th - Thursday 26th October, 2017

Organisers:
Marc Rossello, EMBL-EBI UK
Guy Cochrane, EMBL-EBI UK

Overview

Introducing the 6th consecutive Facilities day hosted by the European Nucleotide Archive (ENA) and taking place in October 2017. Facilities Day is a meeting and networking event which invites representatives of sequencing facilities to participate in discussions and share their views on the impact of ENA as a global sharing platform for sequencing data and how it promotes bioinformatics research. Participants will have the opportunity to exchange ideas directly with ENA project leaders and influence future developments towards sustaining and improving the ENA service.

Participant Demographic

We are drawing delegates from the many scientific groups who submit data, or have some other invested interest in the European Nucleotide Archive. These delegates are using traditional Next Generation Sequencing and newer technologies such as single molecule sequencing platforms, synthetic long read technology, single molecule high throughput restriction enzyme optical mapping and single cell sequencing. Other delegates will be experts in retrieving data from the ENA to analyse and incoporate into their own portals and public services.

Delegates to the ENA Facilities day are involved in fields as diverse as:

  • Pathogen and disease outbreak tracking
  • Environmental microbial biodiversity (human gut/gastrointestinal, skin microbiome, marine bacterioplankton communities, microbe-host interactions, co-evolution of the microbiota and host)
  • Infectious diseases, diagnostics, public health, immunology, inflammatory diseases
  • Evolutionary biology and ancient sources of DNA
  • Cancer genetics, human variation and mutation diseases
  • Gene Regulation and Expression
  • Livestock genomics

Preparation

The meeting takes place over an afternoon and a morning. The afternoon is reserved for participants to present a topic of their choice and discuss the use of sequencing technologies in driving notable research. During the following morning we will discuss the challenges of big data archiving and the significance of public data access.

A large part of the event will be dedicated to discussion and we will be looking for ideas and advice from the experts (the participants). 

Preliminary Programme

Time Topic Speaker
Day 1 - Wednesday 25th October 2017
10:00 - 11:00 Registration Marc Rossello
10:30 - 11:00 Coffee/Tea  
11:00 Welcome Marc Rossello
11:15 Participant slot: Thomas Connor  
11:30 Participant slot: Begona Aguado and Sandra Gonzalez  
11:45 Participant slot: Rolf Sommer Kaas  
12:00 Participant slot: Mark Achtman and colleagues  
12:15 EBI slot: Array Express Nancy George
12:30 EBI slot: Ensembl Genomes Nishadi de Silva
12:45 - 13:45 Lunch and networking  
14:00 ENA submissions: Read data Marc B Rossello
14:20 ENA submissions: Whole genomes Ana Luisa Toribio
14:40 ENA submissions: Annotated Sequences Jeena Rajan
15:00 EGA submissions: European Genome-Phenome Archive Jeff Almeida-King
15:20 - 15:50 Coffee/Tea  
16:00 ENA Data Coordination Clara Amid
16:20 ENA Data Retrieval Nicole Silvester
17:00 - 17:30 Wrap Up and Discussions  
19:00 Dinner at the Red Lion, Hinxton  
Day 2 - Thursday 26th October 2017
09:30 Participant slot: Francis Turner  
09:45 Participant slot: Toni Etuk and Felix Shaw  
10:00 Participant slot: John Davey  
10:15 Participant slot: Lisa Crossman  
10:30 Participant slot: Alex Shaw  
10:45 Participant slot: Jacques Dainat  
11:00 - 11:30 Coffee/Tea  
11:30 Participant slot: Kristian Ullrich  
11:45 Participant slot: Javier Herrero  
12:00 Participant slot: Richard Smith  
12:15 Discussions  
12:45 Wrap up  
13:00 - 14:00 Lunch & further discussions  

 

Additional information

This event will be taking place at the EMBL-EBI Garden Room with in the EBI East Wing building.

Dinner on Wednesday 25th October is at the Red Lion pub, Hinxton. Please submit your menu choices before Monday October 23rd: https://docs.google.com/spreadsheets/d/1v4l63sMTzFQLNtoZeN3XobjDwrzgZaft...

PLEASE NOTE: Attendants please book their own travel and accommodation.
We would recommend that you book your accommodation at any of the following locations:

Information regarding travelling to the EBI can be found here: http://www.ebi.ac.uk/about/travel ( Maps).

Delegates ideally should arrange their transfers prior to their arrival/departure to/from Campus

Some taxi companies are listed below.

Free parking is available within the campus.

The ENA hopes to provide lunches and an evening dinner

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11 Oct 2017: Read data download issues resolved

Read data download issues previously affecting ftp.sra.ebi.ac.uk and fasp.sra.ebi.ac.uk services now resolved.

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04 Oct 2017: ENA Release 133

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