columnId description type age Age when the sample was taken text altitude Altitude (m) number analysis_accession accession number text analysis_alias submitter's name for the analysis text analysis_code_repository Link to repository that contains the code used in the analysis. text analysis_date Date of analysis text analysis_description Describes the analysis in detail text analysis_protocol Link to analysis protocol description, an overview of the full analysis including names, references and versions of any software employed. text analysis_title brief sequence analysis description text analysis_type type of sequence analysis controlled value assembly_software Assembly software text assembly_type analysis Assembly type text binning_software Binning software text bio_material identifier for biological material including institute and collection code text broad_scale_environmental_context Report the major environmental system the sample or specimen came from. The system(s) identified should have a coarse spatial grain, to provide the general environmental context of where the sampling was done (e.g. in the desert or a rainforest). We recommend using subclasses of EnvO’s biome class: http://purl.obolibrary.org/obo/ENVO_00000428. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS. text broker_name broker name controlled value cell_line cell line from which the sample was obtained text cell_type cell type from which the sample was obtained text center_name Submitting center text checklist ENA metadata reporting standard used to register the biosample (Checklist used) controlled value collected_by name of the person who collected the specimen text completeness_score Completeness score (%) number contamination_score Contamination score (%) number country locality of sample isolation: country names, oceans or seas, followed by regions and localities text cultivar cultivar (cultivated variety) of plant from which sample was obtained text culture_collection identifier for the sample culture including institute and collection code text datahub DCC datahub name controlled value description brief sequence description text dev_stage sample obtained from an organism in a specific developmental stage text disease Disease associated with the sample text ecotype a population within a given species displaying traits that reflect adaptation to a local habitat text elevation Elevation (m) number environment_biome Environment (Biome) text environment_feature Environment (Feature) text environment_material Environment (Material) text environmental_medium Report the environmental material(s) immediately surrounding the sample or specimen at the time of sampling. We recommend using subclasses of 'environmental material' (http://purl.obolibrary.org/obo/ENVO_00010483). EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS . Terms from other OBO ontologies are permissible as long as they reference mass/volume nouns (e.g. air, water, blood) and not discrete, countable entities (e.g. a tree, a leaf, a table top). text environmental_sample identifies sequences derived by direct molecular isolation from an environmental DNA sample boolean experiment_accession experiment accession number text experimental_factor variable aspects of the experimental design text first_created date when first created date first_public date when made public date germline the sample is an unrearranged molecule that was inherited from the parental germline boolean host natural (as opposed to laboratory) host to the organism from which sample was obtained text host_body_site name of body site from where the sample was obtained text host_genotype genotype of host text host_gravidity whether or not subject is gravid, including date due or date post-conception where applicable text host_growth_conditions literature reference giving growth conditions of the host text host_phenotype phenotype of host text host_scientific_name Scientific name of the natural (as opposed to laboratory) host to the organism from which sample was obtained text host_sex physical sex of the host controlled value host_status condition of host (eg. diseased or healthy) text host_tax_id NCBI taxon id of the host number identified_by name of the taxonomist who identified the specimen text investigation_type the study type targeted by the sequencing text isolate individual isolate from which sample was obtained text isolation_source describes the physical, environmental and/or local geographical source of the sample text last_updated date when last updated date local_environmental_context Report the entity or entities which are in the sample or specimen’s local vicinity and which you believe have significant causal influences on your sample or specimen. We recommend using EnvO terms which are of smaller spatial grain than your entry for "broad-scale environmental context". Terms, such as anatomical sites, from other OBO Library ontologies which interoperate with EnvO (e.g. UBERON) are accepted in this field. EnvO documentation about how to use the field: https://github.com/EnvironmentOntology/envo/wiki/Using-ENVO-with-MIxS. text location geographic location of isolation of the sample latlon location_end latlon location_start latlon marine_region geographical origin of the sample as defined by the marine region text mating_type mating type of the organism from which the sequence was obtained text ncbi_reporting_standard NCBI metadata reporting standard used to register the biosample (Package used) controlled value pipeline_name analysis pipeline name text pipeline_version analysis pipeline version text project_name name of the project within which the sequencing was organized text protocol_label the protocol used to produce the sample text pubmed_id PubMed ID text reference_data_set_name Taxonomic reference library analysis set name text reference_data_set_version Taxonomic reference library analysis set version text reference_genome The reference genome used in the analysis. Use 'not applicable' if a reference genome was not required for this analysis type. text related_analysis_accession related analysis accession number text run_accession run accession number text salinity Salinity (PSU) number sample_accession sample accession number text sample_alias submitter's name for the sample text sample_capture_status Sample capture status text sample_collection the method or device employed for collecting the sample text sample_description detailed sample description text sample_material sample material label text sample_title brief sample title text sampling_campaign the activity within which this sample was collected text sampling_platform the large infrastructure from which this sample was collected text sampling_site the site/station where this sample was collection text scientific_name scientific name of an organism text secondary_project Secondary project text secondary_sample_accession secondary sample accession number text secondary_study_accession secondary study accession number text sequencing_method sequencing method used text serotype serological variety of a species characterized by its antigenic properties text serovar serological variety of a species (usually a prokaryote) characterized by its antigenic properties text sex sex of the organism from which the sample was obtained controlled value specimen_voucher identifier for the sample culture including institute and collection code text status Status number strain strain from which sample was obtained text study_accession study accession number text study_alias submitter's name for the study text study_title brief sequencing study description text sub_species name of sub-species of organism from which sample was obtained text sub_strain name or identifier of a genetically or otherwise modified strain from which sample was obtained text submission_accession submission accession number text submission_tool Submission tool text submitted_format format of submitted reads text submitted_host_sex physical sex of the host text submitted_md5 MD5 checksum of submitted files text surveillance_target Surveillance target number tag Classification Tags controlled value target_gene targeted gene or locus name for marker gene studies text tax_id NCBI taxonomic classification taxonomy taxonomic_classification Taxonomic classification text taxonomic_identity_marker Taxonomic identity marker text temperature Temperature (C) number tissue_lib tissue library from which sample was obtained text tissue_type tissue type from which the sample was obtained text variety variety (varietas, a formal Linnaean rank) of organism from which sample was derived text