ID OP414181; SV 1; circular; genomic DNA; STD; VRL; 7946 BP. XX AC OP414181; XX DT 14-JUN-2023 (Rel. 144, Created) DT 15-JUN-2023 (Rel. 144, Last updated, Version 1) XX DE Deltapapillomavirus 4 strain 4R67, complete genome. XX KW . XX OS Deltapapillomavirus 4 OC Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; OC Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; OC Deltapapillomavirus. XX RN [1] RP 1-7946 RA Gysens L., Vanmechelen B., Maes P., Haspeslagh M., Martens A.; RT "Genomic characterization of Bovine Papillomavirus types 1 and 2 provides RT indications to infer the direction of cross-species transmission between RT cattle and horses"; RL Unpublished. XX RN [2] RP 1-7946 RA Vanmechelen B., Gysens L., Haspeslagh M., Martens A., Maes P.; RT ; RL Submitted (08-SEP-2022) to the INSDC. RL Department of Microbiology, Immunology and Transplantation, KU Leuven - RL Rega institute, Herestraat 49, Leuven 3000, Belgium XX DR MD5; 84957e3c30069652a9db269084ff6369. XX CC ##Assembly-Data-START## CC Assembly Method :: Medaka v. 1.4.1 CC Sequencing Technology :: Oxford Nanopore Technologies CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..7946 FT /organism="Deltapapillomavirus 4" FT /host="Bos taurus" FT /strain="4R67" FT /mol_type="genomic DNA" FT /country="Belgium: BE9240" FT /isolation_source="papilloma" FT /collection_date="05-May-2021" FT /db_xref="taxon:337052" FT misc_feature 1..940 FT /note="URR" FT misc_binding 107..119 FT /bound_moiety="E2BS" FT misc_binding 269..281 FT /bound_moiety="E2BS" FT misc_binding 312..324 FT /bound_moiety="E2BS" FT misc_binding 363..375 FT /bound_moiety="E2BS" FT misc_binding 414..426 FT /bound_moiety="E2BS" FT misc_binding 495..507 FT /bound_moiety="E2BS" FT misc_binding 524..536 FT /bound_moiety="E2BS" FT misc_binding 538..550 FT /bound_moiety="E2BS" FT misc_binding 664..676 FT /bound_moiety="E2BS" FT misc_binding 685..697 FT /bound_moiety="E2BS" FT misc_binding 800..812 FT /bound_moiety="E2BS" FT misc_binding 843..862 FT /bound_moiety="E1BS" FT gene 941..1354 FT /gene="E6" FT CDS 941..1354 FT /codon_start=1 FT /gene="E6" FT /product="E6" FT /protein_id="WGT86208.1" FT /translation="MDLKPFARTNPFSGLDCLWCREPLTEVDAFRCMVKDFHVVIREGC FT RYGACTICLENCLATERRLWQGVPVTGEEAELLHGKTLDRLCIRCCYCGGKLTKNEKHR FT HVLFNEPFCKTRANIIRGRCYDCCRHGSRSKYP" FT gene 1329..1712 FT /gene="E7" FT CDS 1329..1712 FT /codon_start=1 FT /gene="E7" FT /product="E7" FT /protein_id="WGT86209.1" FT /translation="MVQGPNTHRNLDDSPAGPLLILSPCAGTPTRSPAAPDAPDFRLPC FT HFGRPTRKRGPTTPPLSSPGKLCATGPRRVYSVTVCCGNCGKELTFAVKTSSTSLLGFE FT HLLNSDLDLLCPRCESRERHGKR" FT gene 1699..3516 FT /gene="E1" FT CDS 1699..3516 FT /codon_start=1 FT /gene="E1" FT /product="E1" FT /protein_id="WGT86210.1" FT /translation="MANDKGSNWDSGLGCSYLLTEAECESDKENEEPGAGVELSVESDR FT YDSQDEDFVDNASVFQGNHLEVFQALEKKAGEEQILNLKRKVLGSSQNSSGSEASETPV FT KRRKSGAKRRLFAENEANRVLTPLQVQGEGEGRQELNEEQAISHLHLQLVKSKNATVFK FT LGLFKSLFLCSFHDITRLFKNDKTTNQQWVLAVFGLAEVFFEASFELLKKQCSFLQMQK FT RSHEGGTCAVYLICFNTAKSRETVRNLMANMLNVREECLMLQPPKIRGLSAALFWFKSS FT LSPATLKHGALPEWIRAQTTLNESLQTEKFDFGTMVQWAYDHKYAEESKIAYEYALAAG FT SDSNARAFLATNSQAKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEGSWKSIL FT TFFNYQNIELITFINALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVLSFA FT NHKSHFWLASLADTRAALVDDATHACWRYFDTYLRNALDGYPVSIDRKHKAAVQIKAPP FT LLVTSNIDVQAEDRYLYLHSRVQTFRFEQPCTDESGEQPFNITDADWKSFFVRLWGRLD FT LIDEEEDSEEDGDSMRTFTCSARNTNAVD" FT gene 3458..4690 FT /gene="E2" FT CDS 3458..4690 FT /codon_start=1 FT /gene="E2" FT /product="E2" FT /protein_id="WGT86211.1" FT /translation="METACERLHVAQETQMQLIEKSSDKLQDHILYWTAVRTENTLLYA FT ARKKGVTVLGHCRVPHSVVCQERAKQAIEMQLSLQELSKTEFGDEPWSLLDTSWDRYMS FT EPKRCFKKGARVVEVEFDGNASNTNWYTVYSNLYMRTEDGWQLAKAGADGTGLYYCTMA FT GAGRTYYSRFGDEAARFSTTGHYSVRDQDRVYAGVSSTSSDFRDRPDGVWVASEGPEGD FT PAGKEAEPAQPVSSLLGSPACGPIRAGLGWVRDGPRSHPYNFPAGSGGSILRSSSTPVQ FT GTVPVDLASRQEEEEQSPDSTEEEPVTLPRRTTNDGFHLLKAGGSCFALISGTANQVKC FT YRFRVKKNHRHRYENCTTTWFTVADNGAERQGQAQILITFGSPSQRQDFLKHVPLPPGM FT NISGFTASLDF" FT gene 4729..4863 FT /gene="E5" FT CDS 4729..4863 FT /codon_start=1 FT /gene="E5" FT /product="E5" FT /protein_id="WGT86212.1" FT /translation="MPNLWFLLFLGLVAAMQLLLLLFLLLFFLVYWDHFECSCTGLPF" FT gene 5037..6446 FT /gene="L2" FT CDS 5037..6446 FT /codon_start=1 FT /gene="L2" FT /product="L2" FT /protein_id="WGT86213.1" FT /translation="MSARKRVKRASAYDLYRTCKQAGTCPPDVIPKVEGDTIADKILKF FT GGLAIYLGGLGIGTWSTGRVAAGGSPRYTPLRTAGSTSSLASIGSRAVTAGTRPSIGAG FT IPLDTLETLGALRPGVYEDTVLPEAPAIVTPDAVPADSGLDALSIGTDSSTETLITLLE FT PEGPEDIAVLELQPLDRPTWQVSNAVHQSSAYHAPLQLQSSIAETSGLENIFVGGSGLG FT DTGGENIELTYFGSPRTSTPRSIVSKSRGILNWFSKRYYTQVPTEDPEVFSSQTFANPL FT YEAEPAVLKGPSGRVGLSQVYKPDTLTTRSGTEVGPQLHVRYSLSTIHEDVEAIPYTVD FT ENTQGLAFVPLHEEQAGFEEIELDDFSETHRLLPQNTSSTPVGSGVRRSLIPTQEFSAT FT RPTGVVTYGSPDTYSASPVTDPDSTSPSLVIDDTTTTPIIIIDGHTVDLYSSNYTLHPS FT LLRKRKKRKHA" FT gene 6459..7946 FT /gene="L1" FT CDS 6459..7946 FT /codon_start=1 FT /gene="L1" FT /product="L1" FT /protein_id="WGT86214.1" FT /translation="MALWQQGQKLYLPPTPVSKVLCSETYVQRKSIFYHAETERLLTIG FT HPYYPVSIGAKTVPKVSANQYRVFKIQLPDPNQFALPDRTVHNPSKERLVWAVIGVQVS FT RGQPLGGTVTGHPTFNALLDAENVNRKVTTQTTDDRKQTGLDAKQQQILLLGCTPAEGE FT YWTTARPCVTDRLENGACPPLELKNKHIEDGDMMEIGFGAANFKEINASKSDLPLDIQN FT EICLYPDYLKMAEDAAGNSMFFFARKEQVYVRHIWTRGGSEKEAPTTDFYLKNNKGDAT FT LKIPSVHFGSPSGSLVSTDNQIFNRPYWLFRAQGMNNGIAWNNLLFLTVGDNTRGTNLT FT ISVASDGTPLTEYDSSKFNVYHRHMEEYKLAFILELCSVEITAQTVSHLQGLMPSVLEN FT WEIGVQPPTSSILEDTYRYIESPATKCASNVIPAKEDPYAGFKFWNIDLKEKLSLDLDQ FT FPLGRRFLAQQGAGCSTVRKRRISQKTSSKPAKKKKK" XX SQ Sequence 7946 BP; 2270 A; 1717 C; 1888 G; 2071 T; 0 other; aagctaagtt tctataaatg ttctgtaaat gtaaaacaga aggtaagtca actgcaccta 60 ataaaaatca cttaatagca atgtgctgtg tcagttgttt attggaacca cacccggtac 120 acatcctgtc cagcatttgc agtgcgtgca ttgaattatt gtgctggcta gacttcatgg 180 cgcctggcac cgaatcctgc cttctcagcc aaaatgaata attgctttgt tggcaagaaa 240 ctaagcatca atgggacgcg tgcaaagcac cggcggcggt agatgcgggg taagtactga 300 attttaattc gacctatccc ggtaaagcga aagcgacacg cttttttttc acacatagcg 360 ggaccgaaca cgttataagt atcgattagg tctatttttg tctctctgtc ggaaccagaa 420 ctggtaaaag tttccattgc gtctgggctt gtctatcatt gcgtctctat ggtttttgga 480 ggattagacg ggccaccagt aatggtgcat agcggatgtc tgtaccgcca tcggtgcacc 540 gatataggtt tggggctccc caagggactg ctgggatgac agcttcatat tatattgaat 600 gggcgcataa tcagcttaat tggtgaggac aagctacaag ttgtaacctg atctccacaa 660 agtaccgttg ccggtcgggg tcaaaccgtc ttcggtgctc gaaaccgcct taaactacag 720 acaggtccca gccaagtagg cggatcaaaa cctcaaaaag gcgggagcca atcaaaatgc 780 agcattatat tttaagctca ccgaaaccgg taagtaaaga ctatgtattt tttcccagtg 840 aataattgtt gttaacaata atcacaccat caccgttttt tcaagcggga aaaaatagcc 900 agctaactat aaaaagctgc tgacagaccc cggttttcac atggacctga aaccttttgc 960 aagaaccaat ccattctcag ggttggactg tctgtggtgc agagagcctc ttacagaagt 1020 tgatgctttt aggtgcatgg tcaaagactt tcatgttgta attcgggaag gctgtagata 1080 tggtgcatgt accatttgtc ttgaaaactg tttagctact gaaagaagac tttggcaagg 1140 tgttccagta acaggtgagg aagctgaatt attgcatggc aaaacacttg ataggctttg 1200 cataagatgc tgctactgtg ggggcaaact aacaaaaaat gaaaaacatc ggcatgtgct 1260 ttttaatgag cctttctgca aaaccagagc taacataatt agaggacgct gctacgactg 1320 ctgcagacat ggttcaaggt ccaaataccc atagaaactt ggatgattca cctgcaggac 1380 cgttgctgat tttaagtcca tgtgcaggca cacctaccag gtctcctgca gcacctgatg 1440 cacctgattt cagacttccg tgccatttcg gccgtcctac taggaagcga ggtcccacta 1500 cgcctccgct ttcctctccc ggaaaactgt gtgcaacagg gccacgtcga gtgtactctg 1560 tgactgtctg ctgtggaaac tgcggaaaag agctgacttt tgctgtgaag accagctcga 1620 cgtccctgct tggatttgaa caccttttaa actcagattt agacctcttg tgtccacgtt 1680 gtgaatctcg cgagcgtcat ggcaaacgat aaaggtagca attgggattc gggcttggga 1740 tgctcatatc tgctgactga ggcagaatgt gaaagtgaca aagagaatga ggaacccggg 1800 gcaggtgtag aactgtctgt ggaatctgat cggtatgata gccaggatga ggattttgtt 1860 gacaatgcat cagtctttca gggaaatcac ctggaggtct tccaggcatt agagaaaaag 1920 gcgggtgagg agcagatttt aaatttgaaa agaaaagtat tggggagttc gcaaaacagc 1980 agcggttccg aagcatctga aactccagtt aaaagacgga aatcaggagc aaagcgaaga 2040 ttatttgctg aaaatgaagc taaccgtgtt cttacgcccc tccaggtaca gggggagggg 2100 gaggggaggc aagaacttaa tgaggagcag gcaattagtc atctacatct gcagcttgtt 2160 aaatctaaaa atgctacagt ttttaagctg gggctcttta aatctttgtt cctttgtagc 2220 ttccatgata ttacgaggtt gtttaagaat gataagacca ctaatcagca atgggtgctg 2280 gctgtgtttg gccttgcaga ggtgtttttt gaggcgagtt tcgaactcct aaagaagcag 2340 tgtagttttc tgcagatgca aaaaagatct catgaaggag gaacttgtgc agtttactta 2400 atctgcttta acacagctaa aagcagagaa acagtccgga atctgatggc aaacatgcta 2460 aatgtaagag aagagtgttt gatgctgcag ccacctaaaa ttcgaggact cagcgcagct 2520 ctattctggt ttaaaagtag tttgtcaccc gctacactta aacatggtgc tttacctgag 2580 tggatacggg cgcaaactac tctgaacgag agcttgcaga ccgagaaatt cgacttcgga 2640 actatggtgc aatgggccta tgatcacaaa tatgctgagg agtctaaaat agcctatgaa 2700 tatgctttgg ctgcaggatc tgatagcaat gcacgggctt ttttagcaac taacagccaa 2760 gctaagcatg tgaaggactg tgcaactatg gtaagacact atctaagagc tgaaacacaa 2820 gcattaagca tgcctgcata tattaaagct aggtgcaagc tggcaactgg ggaaggaagc 2880 tggaagtcta tcctaacttt ttttaactat cagaatattg aattaattac ctttattaat 2940 gctttaaagc tctggctaaa aggaattcca aaaaaaaact gtttagcatt tattggccct 3000 ccaaacacag gcaagtctat gctctgcaac tcattaattc attttttggg tggtagtgtt 3060 ttatcttttg ccaaccataa aagtcacttt tggcttgctt ccctagcaga tactagagct 3120 gctttagtag atgatgctac tcatgcttgc tggaggtact ttgacacata cctcagaaat 3180 gcattggatg gctaccctgt cagtattgat agaaaacaca aagcagcggt tcaaattaaa 3240 gctccacccc tcctggtaac cagtaatatt gatgtgcagg cagaggacag atatttgtac 3300 ttgcatagtc gggtgcaaac ctttcgcttt gagcagccat gcacagatga atcgggtgag 3360 caacctttta atattactga tgcagattgg aaatcttttt ttgtaaggtt atgggggcgt 3420 ttagacctga ttgacgagga ggaggatagt gaagaggatg gagacagcat gcgaacgttt 3480 acatgtagcg caagaaacac aaatgcagtt gattgagaaa agtagtgata agttgcaaga 3540 tcatatactg tactggactg ctgttagaac tgagaacaca ctgctttatg ctgcaaggaa 3600 aaaaggggtg actgtcctag gacactgcag agtaccacac tctgtagttt gtcaagagag 3660 agccaagcag gccattgaaa tgcagttgtc tttgcaggag ttaagcaaaa ctgagtttgg 3720 ggatgaacca tggtctttgc ttgacacaag ctgggaccga tatatgtcag aacctaaacg 3780 gtgctttaag aaaggcgcca gggtggtaga ggtggagttt gatggaaatg caagcaatac 3840 aaactggtac actgtctaca gcaatttgta catgcgcaca gaggacggct ggcagcttgc 3900 gaaggctggg gctgacggaa ctgggctcta ctactgcacc atggccggtg ctggacgcac 3960 ttactattct cgctttggtg acgaggcagc cagatttagt acaacagggc attactctgt 4020 aagagatcag gacagagtgt atgctggtgt ctcatccacc tcttctgatt ttagagatcg 4080 cccagacgga gtctgggtcg catccgaagg acctgaagga gaccctgcag gaaaagaagc 4140 cgagccagcc cagcctgtct cttctttgct cggctccccc gcctgcggtc ccatcagagc 4200 aggcctcggt tgggtacggg acggtcctcg ctcgcacccc tacaattttc ctgcaggctc 4260 ggggggctct attctccgct cttcctccac cccggtgcag ggcacggtac cggtggactt 4320 ggcatcaagg caggaagaag aggagcagtc gcccgactcc acagaggaag aaccagtgac 4380 tctcccaagg cgcaccacca atgatggatt ccacctgtta aaggcaggag ggtcatgctt 4440 tgctctaatt tcaggaactg ctaaccaggt aaagtgctat cgctttcggg tgaaaaagaa 4500 ccatagacat cgctacgaga actgcaccac cacctggttc acagttgctg acaacggtgc 4560 tgaaagacaa ggacaagcac aaatactgat cacctttgga tcgccaagtc aaaggcaaga 4620 ctttctgaaa catgtaccac tacctcctgg aatgaacatt tccggcttta cagccagctt 4680 ggacttctga tcactgccat tgccttttct tcatctgact ggtgtactat gccaaatcta 4740 tggtttctat tgttcttggg actagttgct gcaatgcaac tgctgctatt actgttctta 4800 ctcttgtttt ttcttgtata ctgggatcat tttgagtgct cctgtacagg tctgcccttt 4860 taatgccttt acgtcactgg ctattggctg tgtttttact gttgtgtgga tttgatttgt 4920 tttatatact gtatgaagtg ttttcatttg tgcttgtatt gctgtttgta agttttttac 4980 tagagtttgt attccccctg ctcagatttt atatggttta agctgcagca ataaaaatga 5040 gtgcacgaaa aagagtaaaa cgtgccagtg cctatgacct gtacaggaca tgcaagcaag 5100 cgggcacatg tccaccagat gtgataccaa aggtagaagg agatactata gcagataaaa 5160 ttttgaaatt tgggggtctt gcaatctact taggagggct aggaatagga acatggtcta 5220 ctggaagggt tgctgcaggt ggatcaccaa ggtacacacc actccgaaca gcagggtcca 5280 catcatcgct tgcatcaata ggatccagag ctgtaacagc agggacccgc cccagtatag 5340 gtgcgggcat tcctttagac acccttgaaa ctcttggggc cttgcgtcca ggggtgtatg 5400 aggacactgt gctaccagag gcccctgcaa tagtcactcc tgatgctgtt cctgcagatt 5460 cagggcttga tgccctgtcc ataggtacag actcgtccac ggagaccctc attactctgc 5520 tagagcctga gggtcccgag gacatagcgg ttcttgagct gcaacccctg gaccgtccaa 5580 cctggcaagt aagcaatgct gttcatcagt cctctgcata ccacgcccct ctgcagctgc 5640 aatcgtccat tgcagaaaca tctggtttag aaaatatttt tgtaggaggc tcgggtttag 5700 gggatacagg aggagaaaac attgaactga catacttcgg gtccccacga acaagcacgc 5760 cccgcagtat tgtctctaaa tcacgtggca ttttaaactg gttcagtaaa cggtactaca 5820 cacaggtgcc cacggaagat cctgaagtgt tttcatccca aacatttgca aacccactgt 5880 atgaagcaga accagctgtg cttaagggac ctagtggacg tgttggactc agtcaggttt 5940 ataaacctga tacacttaca acacgtagcg ggacagaggt gggaccacag ctacatgtca 6000 ggtactcatt gagtactata catgaagatg tagaagcaat cccctacaca gttgatgaaa 6060 atacacaggg acttgcattc gtacccttgc atgaagagca agcaggtttt gaggagatag 6120 aattagatga ttttagtgag acacatagac tgctacctca gaacacctct tctacacctg 6180 ttggtagtgg agtacgaaga agcctcattc caactcagga atttagtgca acacggccta 6240 caggtgttgt aacctatggc tcacctgaca cttactctgc tagcccagtt actgaccctg 6300 attctacctc tcctagtcta gttatcgatg acactactac tacaccaatc attataattg 6360 atgggcacac agttgatttg tacagcagta actacacctt gcatccctcc ttgttgagga 6420 aacgaaaaaa acggaaacat gcctaatttt ttttgcagat ggcgttgtgg caacaaggcc 6480 agaagctgta tctccctcca acccctgtaa gcaaggtgct ttgcagtgaa acctatgtgc 6540 aaagaaaaag cattttttat catgcagaaa cggagcgcct gctaactata ggacatccat 6600 attacccagt gtctatcggg gccaaaactg ttcctaaggt ctctgcaaat cagtataggg 6660 tatttaaaat acaactacct gatcccaatc aatttgcact acctgacagg actgttcaca 6720 acccaagtaa agagcggctg gtgtgggcag tcataggtgt gcaggtgtcc agagggcagc 6780 ctcttggagg tactgtaact gggcacccca cttttaatgc tttgcttgat gcagaaaatg 6840 tgaatagaaa agtcaccacc caaacaacag atgacaggaa acaaacaggc ctagatgcta 6900 agcaacaaca gattctgttg ctaggctgta cccctgctga aggggaatat tggacaacag 6960 cccgtccatg tgttactgat cgtctagaaa atggcgcctg ccctcctctt gaattaaaaa 7020 acaagcacat agaagatggg gatatgatgg aaattgggtt tggtgcagcc aacttcaaag 7080 aaattaatgc aagtaaatca gatctacctc ttgacattca aaatgagatc tgcttgtacc 7140 cagactacct caaaatggct gaggacgctg ctggtaatag catgttcttt tttgcaagga 7200 aagaacaggt gtatgttaga cacatctgga ccagaggggg ctcggagaaa gaagccccta 7260 ccacagattt ttatttaaag aataataaag gggatgccac ccttaaaata cccagtgtgc 7320 attttggtag tcccagtggc tcactagtct caactgataa tcaaattttt aatcggccct 7380 actggctatt ccgtgcccag ggcatgaaca atggaattgc atggaataat ttattgtttt 7440 taacagtggg ggacaataca cgtggtacta atcttaccat aagtgtagcc tcagatggaa 7500 ccccactaac agagtatgat agctcaaaat tcaatgtata ccatagacat atggaagaat 7560 ataagctagc ctttatatta gagctatgct ctgtggaaat cacagctcaa actgtgtcac 7620 atctgcaagg acttatgccc tctgtgcttg aaaattggga aataggtgtg cagcctccta 7680 cctcatcgat attagaggac acctatcgct atatagagtc tcctgcaact aaatgtgcaa 7740 gcaatgtaat tcctgcaaaa gaagaccctt atgcagggtt taagttttgg aacatagatc 7800 ttaaagaaaa gctttctttg gacttagatc aatttccctt gggaagaaga tttttagcac 7860 agcaaggggc aggatgttca actgtgagaa aacgaagaat tagccaaaaa acttccagta 7920 agcctgcaaa aaaaaaaaaa aaataa 7946 //