ID M14428; SV 1; circular; genomic DNA; STD; PHG; 5386 BP. XX AC M14428; M25197; XX DT 02-APR-1988 (Rel. 15, Created) DT 17-APR-2005 (Rel. 83, Last updated, Version 2) XX DE Bacteriophage S13 circular DNA, complete genome. XX KW capsid protein; complete genome; overlapping genes; spike protein. XX OS Enterobacteria phage S13 OC Viruses; Microviridae; Bullavirinae; Sinsheimervirus; OC unclassified Sinsheimervirus. XX RN [1] RP 841-1035 RX DOI; 10.1093/nar/4.7.2235. RX PUBMED; 909772. RA Grosveld F.G., Spencer J.H.; RT "The nucleotide sequence of two restriction fragments located in the gene RT AB region of bacteriophage S13"; RL Nucleic Acids Res. 4(7):2235-2252(1977). XX RN [2] RP 1-5386 RX DOI; 10.1016/0378-1119(85)90050-2. RX PUBMED; 3007293. RA Lau P.C.K., Spencer J.H.; RT "Nucleotide sequence and genome organization of bacteriophage S13 DNA"; RL Gene 40(2-3):273-284(1985). XX DR MD5; cb4bdd48241231298f66c97b9fd289e6. DR EuropePMC; PMC1456406; 16361237. DR EuropePMC; PMC2648288; 19116260. DR EuropePMC; PMC2863744; 20147402. DR EuropePMC; PMC3726723; 23922691. DR EuropePMC; PMC5320576; 28348848. XX CC Draft entry and clean copy of sequence in [1] kindly provided by CC J.H.Spencer (20-JUL-1987) XX FH Key Location/Qualifiers FH FT source 1..5386 FT /organism="Enterobacteria phage S13" FT /mol_type="genomic DNA" FT /db_xref="taxon:10844" FT CDS 37..1605 FT /transl_table=11 FT /note="A' gene" FT /db_xref="GOA:P07928" FT /db_xref="InterPro:IPR008766" FT /db_xref="UniProtKB/Swiss-Prot:P07928" FT /protein_id="AAA32581.1" FT /translation="MPPNFGGFFMVRSYYPSECHADYFDFERIEALKPAIEACGISTLS FT QSPMLGFHKQMDNRIKLLEEILSFRMQGVEFDNGDMYVYGHKAASDVRDEFVSVTEKLM FT DELAQCYNVLPQLDINNTIDHPPEGDEKWFLENEKTVTQFCRKLAAERPLKDIRDEYNY FT PKKKGIKDECSRLLEASTMKSRRGFTIQRLMNAMRQAHADGWFIVFDTLTLADDRLEAF FT YDNPNALRDYFRDIGRMVLAAERRKANDSHADCYQYFCVPEYGTANGRLHFHAVHFMRT FT LPSGSVDPNFGRRVRNRRQLNSLQNTWPYGYSMPIAVRYTQDAFSRSGWLWPVDAKGEP FT LKATSYMAVGFYVAKYVNKKSDMDLAAKGLGAKEWNNSLKTKLSLLPKKLFRIRMSRNF FT GMKMFTMTNLSMECLIQLTKLGYDATPFNQILKQNAKREMRLRLGKVTVADVLAAQPVT FT TNLLKFMRASIKMIGVSNLQSFIASMTQKLTLSDISDESKNYLDKAGITTACLRIKSKW FT TAGGK" FT CDS 64..1605 FT /transl_table=11 FT /note="A gene" FT /db_xref="GOA:P07928" FT /db_xref="InterPro:IPR008766" FT /db_xref="UniProtKB/Swiss-Prot:P07928" FT /protein_id="AAA32582.1" FT /translation="MVRSYYPSECHADYFDFERIEALKPAIEACGISTLSQSPMLGFHK FT QMDNRIKLLEEILSFRMQGVEFDNGDMYVYGHKAASDVRDEFVSVTEKLMDELAQCYNV FT LPQLDINNTIDHPPEGDEKWFLENEKTVTQFCRKLAAERPLKDIRDEYNYPKKKGIKDE FT CSRLLEASTMKSRRGFTIQRLMNAMRQAHADGWFIVFDTLTLADDRLEAFYDNPNALRD FT YFRDIGRMVLAAERRKANDSHADCYQYFCVPEYGTANGRLHFHAVHFMRTLPSGSVDPN FT FGRRVRNRRQLNSLQNTWPYGYSMPIAVRYTQDAFSRSGWLWPVDAKGEPLKATSYMAV FT GFYVAKYVNKKSDMDLAAKGLGAKEWNNSLKTKLSLLPKKLFRIRMSRNFGMKMFTMTN FT LSMECLIQLTKLGYDATPFNQILKQNAKREMRLRLGKVTVADVLAAQPVTTNLLKFMRA FT SIKMIGVSNLQSFIASMTQKLTLSDISDESKNYLDKAGITTACLRIKSKWTAGGK" FT CDS 580..1605 FT /transl_table=11 FT /note="A* gene" FT /db_xref="GOA:P07928" FT /db_xref="InterPro:IPR008766" FT /db_xref="UniProtKB/Swiss-Prot:P07928" FT /protein_id="AAA32583.1" FT /translation="MKSRRGFTIQRLMNAMRQAHADGWFIVFDTLTLADDRLEAFYDNP FT NALRDYFRDIGRMVLAAERRKANDSHADCYQYFCVPEYGTANGRLHFHAVHFMRTLPSG FT SVDPNFGRRVRNRRQLNSLQNTWPYGYSMPIAVRYTQDAFSRSGWLWPVDAKGEPLKAT FT SYMAVGFYVAKYVNKKSDMDLAAKGLGAKEWNNSLKTKLSLLPKKLFRIRMSRNFGMKM FT FTMTNLSMECLIQLTKLGYDATPFNQILKQNAKREMRLRLGKVTVADVLAAQPVTTNLL FT KFMRASIKMIGVSNLQSFIASMTQKLTLSDISDESKNYLDKAGITTACLRIKSKWTAGG FT K" FT CDS 1158..1520 FT /transl_table=11 FT /note="B gene" FT /db_xref="GOA:P07929" FT /db_xref="InterPro:IPR003513" FT /db_xref="InterPro:IPR038149" FT /db_xref="UniProtKB/Swiss-Prot:P07929" FT /protein_id="AAA32584.1" FT /translation="MEQLTKNQAVATSQEAFQNQNEPQLRDENVHNDKSVHGVLNPTYQ FT AGLRRDAVQPDIEAERKKRDEIEAGKSYCSRRFGGATCDDKSAQIYARFDKNDWRIQPA FT EFYRFHDAEVNTFGYF" FT CDS 1520..1690 FT /transl_table=11 FT /note="K gene" FT /db_xref="InterPro:IPR020962" FT /db_xref="UniProtKB/Swiss-Prot:P69595" FT /protein_id="AAA32585.1" FT /translation="MSRKIILIKQELLLLVYELNRSGLLAENEKIRPILAQLEKLLLCD FT LSPSTNDSVKN" FT CDS 1602..1862 FT /transl_table=11 FT /note="C gene" FT /db_xref="GOA:P69173" FT /db_xref="InterPro:IPR016407" FT /db_xref="UniProtKB/Swiss-Prot:P69173" FT /protein_id="AAA32586.1" FT /translation="MRKFDLSLRSSRSSYFATFRHQLTILSKTDALDEEKWLNMLGTFV FT KDWFRYESHFVHGRDSLVDILKERGLLSESDAVQPLIGKKS" FT CDS 1859..2317 FT /transl_table=11 FT /note="D gene" FT /db_xref="GOA:P69487" FT /db_xref="InterPro:IPR004196" FT /db_xref="InterPro:IPR036632" FT /db_xref="UniProtKB/Swiss-Prot:P69487" FT /protein_id="AAA32587.1" FT /translation="MSQVTEQSVRFQTALASIKLIQASAVLDLTEDDFDFLTSNKVWIA FT TDRSRARRCVEACVYGTLDFVGYPRFPAPVEFIAAVIAYYVHPVNIQTACLIMEGAEFT FT ENIINGVERPVKAAELFAFTLRVRAGNTDVLTDAEENVRQKLRAEGVM" FT CDS 2037..2312 FT /transl_table=11 FT /note="E gene" FT /db_xref="GOA:P07930" FT /db_xref="InterPro:IPR007605" FT /db_xref="UniProtKB/Swiss-Prot:P07930" FT /protein_id="AAA32588.1" FT /translation="MVRWTLWDTLAFLLLLSLLLPSLLIMFIPSTFKRPVSSWKALNLR FT KTLLMASSVRLKPLNCSRLPCVYAQETLTFLLTQKKTCVKNYVQKE" FT CDS 2317..2433 FT /transl_table=11 FT /note="J gene" FT /db_xref="GOA:P69593" FT /db_xref="InterPro:IPR006815" FT /db_xref="UniProtKB/Swiss-Prot:P69593" FT /protein_id="AAA32589.1" FT /translation="MSKGKKRSGARPGRPQPLRGTKGKRKGARLWYVGGQQF" FT CDS 2470..3753 FT /transl_table=11 FT /note="F gene (capsid protein)" FT /db_xref="GOA:P07931" FT /db_xref="InterPro:IPR003514" FT /db_xref="InterPro:IPR016184" FT /db_xref="InterPro:IPR037002" FT /db_xref="UniProtKB/Swiss-Prot:P07931" FT /protein_id="AAA32590.1" FT /translation="MSNVQTGAERMPHDLSHLGFLAGQIGRLITISTTPVIAGDSFEMD FT AVGALRLSPLRRGLAIDSTVDIFTFYVPHRHVYGERWIKFMKDGVNATPLPTVNTTSYI FT DHAAFLGTINPDTNKIPKHLFQGYLNIYNNYFKAPWMPDRTEANPNELNEDDARYGFRC FT CHLKNIWTAPLPPETELSRRMTTSTTSIDIMGLQAAYANLHTDQERDYFMQRYRDVISS FT FGGKTSYDADNRPLLVMRSNFWASGYDVDGTDQTSLGQFSGRVQQTYKHSVPRFFVPEH FT GTMFTLALVRFPPTATKEIQYLNAKGALTYTDIAGDPALYGNLPPREISMKDVFRSGDS FT SKKFKIAEGQWYRYAPSYVSPVYHLLEGFPFIQEPPSGDLQERVLIRHHDYDHCFQSVQ FT LLQWNSQVKFNVTVYRNLPTTRDSIMTS" FT CDS 3864..4391 FT /transl_table=11 FT /note="G gene" FT /db_xref="GOA:P07932" FT /db_xref="InterPro:IPR003515" FT /db_xref="InterPro:IPR016184" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/Swiss-Prot:P07932" FT /protein_id="AAA32591.1" FT /translation="MFQTFISRHNSNFFSDKLVASSVTPASLAPVLQTPKATSSTLYFD FT SLTVNAGNGGFLHCIQMDTSVNAANQVVSVGADIAFDADPKFFACLVRFESSSVPTTLP FT TAYDVYPLNGRHDGGYYTVKDCVTIDVLPRTPGNNVYVGFMVWSNFTATKCRGLVSLNQ FT VIKVIICLQPLK" FT CDS 4400..5386 FT /transl_table=11 FT /note="H gene (spike protein)" FT /db_xref="GOA:P07933" FT /db_xref="InterPro:IPR006777" FT /db_xref="UniProtKB/Swiss-Prot:P07933" FT /protein_id="AAA32592.1" FT /translation="MFGAIAGGIASALAGGVMSKLFGGGQKAASGGIQGDVLATDNNTV FT GMGDAGIKSAIQGSNVPNSDEAAPSFLSGAMAKAGKGLLEGTLQAGTSAVSDKLLDLVG FT LGGKSAADKGKDTRDYLAAAFPELNAWERAGAGASSSAIVDAGFENQKELTKMQLDNQK FT EIAEMQNETQKEIAGIQSATSRQNTKDQVYAQNEMLAYQQKESTARVASIMENTNLSKQ FT QQVSEIMRQMLTQAQTAGQYFTNDQIKEMTRKVSAEVDLVHQQTQNQRYGSSHIGATAK FT DISNVVTDAASGVVDIFHGIDKAVADTWNNFWKDGKADGIGSNLSRK" XX SQ Sequence 5386 BP; 1288 A; 1137 C; 1251 G; 1710 T; 0 other; ccgtcaggat tgacaccttt ctaattgtgt gatttcatgc ctccaaactt tggaggcttt 60 tttatggttc gttcttatta cccttctgaa tgtcacgctg attattttga ctttgagcgc 120 atcgaggctc ttaaacctgc tattgaggct tgtggcattt ctactctttc tcaatcccct 180 atgcttggct tccataagca gatggataac cgcattaagc tcttggaaga gattctgtct 240 tttcgtatgc agggcgttga gttcgataat ggtgatatgt atgtttacgg ccataaggct 300 gcttctgacg ttcgtgatga gtttgtatct gttactgaga agttaatgga tgaattggca 360 caatgctaca atgtgctccc ccaacttgat attaataaca ctatagacca cccgcccgaa 420 ggggacgaaa aatggttttt agagaacgag aagacggtta cgcagttttg ccgcaagctg 480 gctgctgaac gccctcttaa ggatattcgt gatgagtata attaccccaa aaagaaaggt 540 attaaggatg agtgttcaag attgctggag gcctccacta tgaaatcgcg tagaggcttt 600 actattcagc gtttgatgaa tgcaatgcgc caggctcatg ctgatggttg gtttatcgtt 660 tttgacactc tcacgttggc tgacgatcga ttagaggcgt tttatgataa ccccaatgct 720 ttgcgtgact attttcgtga tattggtcgt atggttcttg ctgccgagcg tcgcaaggct 780 aatgactcac acgccgactg ctatcagtat ttttgtgtgc ctgagtatgg tacagctaat 840 ggccgtcttc atttccatgc ggtgcatttt atgcggacac ttccttcagg tagcgttgac 900 cctaactttg gtcgtcgggt acgcaatcgc cgccagttaa atagcttgca aaatacgtgg 960 ccttatggtt acagtatgcc catcgcagtt cgctacacgc aggacgcttt ttcacgttct 1020 ggttggttgt ggcctgttga tgctaaaggt gagccgctta aagctaccag ttatatggct 1080 gttggtttct atgtggctaa atatgttaac aaaaagtcag atatggacct tgctgctaaa 1140 ggtctaggag ctaaagaatg gaacaactca ctaaaaacca agctgtcgct acttcccaag 1200 aagcttttca gaatcagaat gagccgcaac ttcgggatga aaatgttcac aatgacaaat 1260 ctgtccatgg agtgcttaat ccaacttacc aagctgggtt acgacgcgac gccgttcaac 1320 cagatattga agcagaacgc aaaaagagag atgagattga ggctgggaaa agttactgta 1380 gccgacgttt tggcggcgca acctgtgacg acaaatctgc tcaaatttat gcgcgcttcg 1440 ataaaaatga ttggcgtatc caacctgcag agttttatcg cttccatgac gcagaagtta 1500 acactttcgg atatttctga tgagtcgaaa aattatcttg ataaagcagg aattactact 1560 gcttgtttac gaattaaatc gaagtggact gctggcggaa aatgagaaaa ttcgacctat 1620 ccttgcgcag ctcgagaagc tcttactttg cgacctttcg ccatcaacta acgattctgt 1680 caaaaactga cgcgttggat gaggagaagt ggcttaatat gcttggcacg ttcgtcaagg 1740 actggtttag atatgagtca cattttgttc acggtagaga ttctcttgtt gacattttaa 1800 aagagcgtgg attactatct gagtccgatg ctgttcaacc actaataggt aaaaaatcat 1860 gagtcaagtt actgaacaat ccgtacgttt ccagaccgcg ctggcctcta ttaagctgat 1920 tcaggcttct gccgttttgg atttaaccga agatgatttc gattttctga cgagtaacaa 1980 agtttggatt gctactgacc gctctcgtgc tcgtcgctgc gttgaggctt gcgtttatgg 2040 tacgctggac tttgtgggat accctcgctt tcctgctcct gttgagttta ttgctgccgt 2100 cattgcttat tatgttcatc ccgtcaacat tcaaacggcc tgtctcatca tggaaggcgc 2160 tgaatttacg gaaaacatta ttaatggcgt cgagcgtccg gttaaagccg ctgaattgtt 2220 cgcgtttacc ttgcgtgtac gcgcaggaaa cactgacgtt cttactgacg cagaagaaaa 2280 cgtgcgtcaa aaattacgtg cagaaggagt gatgtaatgt ctaaaggtaa aaaacgttct 2340 ggcgctcgcc ctggtcgtcc gcagccgttg cgaggcacta aaggcaagcg taaaggcgct 2400 cgtctttggt atgtaggcgg tcaacaattt taattgcagg ggcttcggcc ccttacttga 2460 ggataaatta tgtctaatgt tcaaactggc gctgagcgta tgccgcatga cctttcccat 2520 cttggcttcc ttgctggtca gattggtcgt cttattacta tttcaactac tccggttatc 2580 gctggtgact ccttcgagat ggacgccgtt ggcgctctcc gtctttctcc attgcgtcgt 2640 ggccttgcta ttgactctac tgtagatatt tttacttttt atgtccctca tcgtcatgtt 2700 tatggtgagc ggtggattaa gtttatgaag gatggcgtta atgccactcc tcttccgacc 2760 gttaacacta cttcttatat tgaccatgcc gcttttcttg gcacgattaa ccctgatacc 2820 aataaaattc ctaagcattt gtttcagggt tatttgaata tctataacaa ctattttaaa 2880 gcgccgtgga tgcctgaccg caccgaggct aaccctaacg agcttaatga agatgatgcc 2940 cgttatggtt tccgttgctg ccatcttaaa aacatttgga ctgctccgct tcctcctgag 3000 actgagcttt ctcgccgaat gacgacttct accacgtcta ttgacattat gggtctgcaa 3060 gctgcttatg ctaatttgca tactgaccaa gaacgtgatt acttcatgca gcgttaccgt 3120 gatgttattt cttcatttgg aggtaaaacc tcttatgacg ctgacaaccg tcctttactt 3180 gtcatgcgct ctaatttctg ggcatctggc tatgatgttg atggaactga ccaaacgtcg 3240 ttaggtcagt tttctggtcg tgttcaacag acctataaac attctgtgcc gcgttttttt 3300 gttcctgagc atggcactat gtttactctt gcgcttgttc gttttccgcc tactgcgact 3360 aaagagattc agtatcttaa tgctaaaggt gctttgactt ataccgatat tgctggcgac 3420 cctgctttgt atggcaactt gccgccgcgt gaaatttcta tgaaggatgt tttccgttct 3480 ggtgattcat ctaagaagtt taagattgct gagggtcaat ggtatcgtta tgcaccttct 3540 tatgtttctc ctgtatatca ccttcttgaa ggcttcccat ttattcagga accgccttcc 3600 ggtgatttgc aagaacgtgt acttattcgc catcatgact atgaccactg ttttcagtcc 3660 gttcagttgt tgcagtggaa tagtcaggtt aaatttaatg tgaccgttta tcgcaatctg 3720 ccgaccactc gtgattcaat catgacttcg tgataaaaga ttgagtgtga ggttataacg 3780 ccgaagcggt aaaaatttta atttttgccg ctgaggggtt gaccaagcga agcgcggtag 3840 gttttctgct taggagttta atcatgtttc agacttttat ttctcgccat aattcaaact 3900 ttttttctga taagctggtt gctagttctg ttactccagc ttctttagca cctgttttac 3960 agacacctaa agctacatcg tcaacgttat attttgatag tttgacggtt aatgctggta 4020 atggtggttt tcttcattgc attcagatgg atacatctgt caacgccgct aatcaggttg 4080 tttctgttgg tgctgatatt gcttttgatg ccgaccctaa attttttgcc tgtttggttc 4140 gctttgagtc ttcttcggtt ccgactaccc tcccgactgc ctatgatgtt tatcctttga 4200 atggtcgcca tgatggtggt tattataccg tcaaggactg tgtgactatt gacgtccttc 4260 cccgtacgcc gggcaataat gtttatgttg gtttcatggt ttggtctaac tttaccgcta 4320 ctaaatgccg cggattggtt tcgctgaatc aggttattaa agtgattatt tgtctccagc 4380 cacttaagtg aggtgattta tgtttggtgc tattgctggc ggtattgctt ctgctcttgc 4440 tggtggcgtc atgtctaaat tgtttggagg cggtcaaaaa gccgcctccg gtggtattca 4500 aggtgatgtt cttgctaccg ataacaatac tgtaggcatg ggtgacgctg gtattaaatc 4560 tgctattcaa ggttctaatg ttcccaactc tgatgaggcc gcacccagtt ttctttctgg 4620 tgctatggct aaagctggta aaggacttct tgaaggtacg ttgcaagctg gcacttctgc 4680 cgtttctgat aagttgcttg atttggttgg gcttggtggc aagtctgccg ctgataaagg 4740 aaaggatact cgtgattatc ttgctgctgc atttcctgag cttaatgctt gggagcgtgc 4800 tggtgctggt gcttcctctt ctgctatagt tgacgccgga tttgagaatc aaaaagagct 4860 tactaaaatg caattggaca atcagaaaga gattgccgag atgcaaaatg agactcaaaa 4920 agagattgct ggcattcagt cggcgacttc acgccagaat acgaaagacc aggtatatgc 4980 acaaaatgag atgcttgctt atcaacagaa ggagtctact gctcgcgttg cgtctattat 5040 ggaaaatacc aatctttcca agcaacagca ggtttccgag attatgcgcc agatgcttac 5100 gcaagctcaa acggctggtc agtattttac caatgaccaa atcaaagaaa tgacccgtaa 5160 ggttagtgct gaggttgact tagttcatca gcaaacgcag aatcagcggt atggttcttc 5220 tcatattggc gctactgcaa aggatatttc taatgtcgtc actgatgctg cttctggtgt 5280 ggttgatatt tttcatggta ttgataaagc tgttgccgat acttggaaca atttctggaa 5340 agatggtaaa gctgatggca ttggctctaa tttgtctagg aagtaa 5386 //