ID KC821631; SV 1; circular; genomic DNA; STD; PHG; 6478 BP. XX AC KC821631; XX DT 01-JUL-2013 (Rel. 117, Created) DT 03-JAN-2016 (Rel. 127, Last updated, Version 2) XX DE Cellulophaga phage phi48:1, complete genome. XX KW . XX OS Cellulophaga phage phi48:1 OC Viruses; Microviridae; unclassified Microviridae. XX RN [1] RP 1-6478 RX DOI; 10.1073/pnas.1305956110. RX PUBMED; 23858439. RA Holmfeldt K., Solonenko N., Shah M., Corrier K., Riemann L., RA Verberkmoes N.C., Sullivan M.B.; RT "Twelve previously unknown phage genera are ubiquitous in global oceans"; RL Proc. Natl. Acad. Sci. U.S.A. 110(31):12798-12803(2013). XX RN [2] RP 1-6478 RA Holmfeldt K., Solonenko N., Shah M., Corrier K., Riemann L., RA VerBerkmoes N.C., Sullivan M.B.; RT ; RL Submitted (24-MAR-2013) to the INSDC. RL Ecology and Evolutionary Biology, University of Arizona, 1007 East Lowell RL Street, Tucson, AZ 85721, USA XX DR MD5; b27986ac2f1999c531dd9bc4d5934711. XX CC ##Assembly-Data-START## CC Assembly Method :: Newbler v. 2.6 CC Sequencing Technology :: Sanger dideoxy sequencing; IonTorrent CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..6478 FT /organism="Cellulophaga phage phi48:1" FT /host="Cellulophaga baltica NN016048" FT /strain="phi48:1" FT /mol_type="genomic DNA" FT /country="Denmark:Oresund, Southern Kattegat, 1m depth" FT /isolation_source="seawater" FT /collection_date="31-May-2005" FT /db_xref="taxon:1328028" FT gene 83..205 FT /locus_tag="Phi48:1_gp1" FT CDS 83..205 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="Phi48:1_gp1" FT /product="hypothetical protein" FT /db_xref="GOA:S0A1W2" FT /db_xref="UniProtKB/TrEMBL:S0A1W2" FT /protein_id="AGO49401.1" FT /translation="MKLSEKIFNALCYALKMQLLINALILFVLFVWGVVLIIKG" FT gene 211..1347 FT /locus_tag="Phi48:1_pg2" FT CDS 211..1347 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="Phi48:1_pg2" FT /product="replication initiation factor" FT /note="annotation based on sequence similarity to NCBI FT YP_004695192, CDD cl14333, and Pfam PF02486.14" FT /db_xref="GOA:S0A4P7" FT /db_xref="InterPro:IPR003491" FT /db_xref="UniProtKB/TrEMBL:S0A4P7" FT /protein_id="AGO49402.1" FT /translation="MFKEAIKNANVPIQYNGDLLDNKLMFVTDYMILSLKGIPIVQDTN FT GLKFSPRDYGTAIFKDVLDVTIDGNIFGTISCSPRSPIVPFDTVHFKLENSLFYTKPGF FT QLLHYCNRLLNTLQIEFKGVNRLDLAVDYTDTSITKNVLTCLTSKSFRMSGRKKEVKFF FT SVTDTGYIDFQGVQIGKRTSSRFCRIYNKTLEMNTQKMKPYIANAWRSHGMQGEIWRFE FT YQLNSKFMSEIKGLTLNNLFQKDFLISLLEMARKNHFEIKFNTNKSEINKEKTFDFMPM FT SIIRELAKIPFLYVEKIKRCISESLIGQKRLIKGLMRGYASTGQNIKYLSPLKQILNDF FT VLSEWFFQKVGYYFDEFKKQQLSKNLSFTLFTKHFREL" FT gene 1344..1565 FT /locus_tag="Phi48:1_pg3" FT CDS 1344..1565 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="Phi48:1_pg3" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:S0A526" FT /protein_id="AGO49403.1" FT /translation="MRITNKQLAVYIGVSERVVKRHRLYYISCLQLKRNYLTLYDISRL FT DGVPVVVVARIMGFPNSIINKISEDNGR" FT gene 1664..2389 FT /locus_tag="Phi48:1_pg4" FT CDS 1664..2389 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="Phi48:1_pg4" FT /product="structural protein" FT /note="annotation based on similarity to Cellulophaga phage FT phi18:4_gp4" FT /db_xref="UniProtKB/TrEMBL:S0A1E0" FT /protein_id="AGO49404.1" FT /translation="MLVYNETGKTKSGELRITRPISSLLIRTSKKLSELANEKITIFIE FT KANGNNVEIATNISLVAFMMGGTYGESGTFQMQLDGSVVNTAMVELSETGSVLLGENES FT IKILLTDLTSTATYAINGMESPIKGSDIVKYERKVVLTEDVQRKYDVSSHELMILDGVS FT HIDQAHITYNNGETIKLTSDEIKAVALDVDVLTAIEGGSVVTYVNDLIVFPLVGVDAIE FT LFKSNGLITLTLKDANLNY" FT gene 2394..2816 FT /locus_tag="Phi48:1_pg5" FT CDS 2394..2816 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="Phi48:1_pg5" FT /product="structural protein" FT /note="annotation based on similarity to Cellulophaga phage FT phi18:4_gp5" FT /db_xref="GOA:S0A3K3" FT /db_xref="UniProtKB/TrEMBL:S0A3K3" FT /protein_id="AGO49405.1" FT /translation="MGFFKNIFKKKKGGTFLGNLVRGVSSSATGGILGSGAGLAKWEAE FT QAQKEQDAMVAQQVQNSSAYKVGTAVGLQAKPYVDAVKNSEEVADAKKSMILDWLKTNW FT IKLLIPIVLLTLLVVWLIRRNKNGNQSGGTRYKKAK" FT gene 2773..3261 FT /locus_tag="Phi48:1_pg6" FT CDS 2773..3261 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="Phi48:1_pg6" FT /product="structural protein" FT /note="annotation based on similarity to Cellulophaga phage FT phi18:4_gp6" FT /db_xref="UniProtKB/TrEMBL:S0A1X0" FT /protein_id="AGO49406.1" FT /translation="MVINQAVLATKKLNKMANRNYNNSNRNGGSNFSQNQNNNQPQFKK FT SGVVYSPIKGRDGLYMVNAWNASKKGLVLAKCFPYHATTDKSGAILVVTSAKNNTYIKM FT MCEITYRKTGITRLLPCLMNIETQVIALSELGMVISPNGHGKTRNGKTAKGYFGTFTG" FT gene 3308..3466 FT /locus_tag="Phi48:1_pg7" FT CDS 3308..3466 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="Phi48:1_pg7" FT /product="structural protein" FT /note="annotation based on similarity to Cellulophaga phage FT phi18:4_gp7" FT /db_xref="GOA:S0A4Q3" FT /db_xref="UniProtKB/TrEMBL:S0A4Q3" FT /protein_id="AGO49407.1" FT /translation="MKIVGIITKYIAFAIKYAGIVLVVVEILAFAQTKLEQFNTKTVKD FT ESDVNKA" FT gene 3441..4001 FT /locus_tag="Phi48:1_pg8" FT CDS 3441..4001 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="Phi48:1_pg8" FT /product="mannosyl-glycoprotein FT endo-beta-N-acetylglucosaminidase" FT /db_xref="GOA:S0A531" FT /db_xref="InterPro:IPR002901" FT /db_xref="UniProtKB/TrEMBL:S0A531" FT /protein_id="AGO49408.1" FT /translation="MKATLTKLKIWVLIWWYKNLNGYGNISVKLLYSQAWHETGNFKSA FT VYEENKNLFGMRHPSKRKTLSLGSNLSHARYKNHKDSIIDYFYRQQNFRIANVSDEQYM FT EATVKSNYAEDKNYYAKWKAIYLKMKLPVDNKLLYMVGLFFLVVIVYKFIRSRDWSTKT FT DRKKDNKQQTININTHGKVYATK" FT gene 3976..4392 FT /locus_tag="Phi48:1_pg9" FT CDS 3976..4392 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="Phi48:1_pg9" FT /product="structural protein" FT /note="annotation based on similarity to Cellulophaga phage FT phi18:4_gp9" FT /db_xref="GOA:S0A1E6" FT /db_xref="UniProtKB/TrEMBL:S0A1E6" FT /protein_id="AGO49409.1" FT /translation="MVKFMQLSKKYWYVLVILAALIAFWIYKIFKKKPTSQTEASDKIL FT IKEGVTFNDQAKRDLNNTAIQIAQHLGTSFPWYDPRSWSENDEDLFKIILPLSQKEFDL FT VAKLYFGVYAKGRDLRVDLANLLDAKYYEQLNVK" FT gene 4392..5060 FT /locus_tag="Phi48:1_pg10" FT CDS 4392..5060 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="Phi48:1_pg10" FT /product="structural protein" FT /note="annotation based on similarity to Cellulophaga phage FT phi18:4_gp10" FT /db_xref="UniProtKB/TrEMBL:S0A3K8" FT /protein_id="AGO49410.1" FT /translation="MVVGYFIGVNRDFKLIEIPVLFENEIFSTKEFFEDVLLFDLFINQ FT QRYFYRGFNAAETHAFNNTLSVELIQERYFRSEGQKLEFNMGHIFRLSCCDFASRIPSR FT SELALPDYDPLFTFNVVNGPNSNYALHNFAYGLYSTGGQFIPTIIEDFKADTNTVVWQY FT RLSDVVGKEIAFIAFDPNGSNVFTLEVDGVQYAQEGYVYVFGSQSADVVKTVIINQTLQ FT " FT gene 5309..5680 FT /locus_tag="Phi48:1_pg11" FT CDS 5309..5680 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="Phi48:1_pg11" FT /product="structural protein" FT /note="annotation based on similarity to Cellulophaga phage FT phi18:4_gp11" FT /db_xref="UniProtKB/TrEMBL:S0A1X4" FT /protein_id="AGO49411.1" FT /translation="MNAELKNGTSQRKLVKIVKTSKKLPLTKQNIVLLRNNGIDCAALQ FT RTFSRFYSTRRVGQLLFLKSTILIESTGKPHKEITIDCSRWSFEHRVTVISGGSQNEFD FT FVVDGARDLCIKLFNHKLL" FT gene 5681..6199 FT /locus_tag="Phi48:1_gp12" FT CDS 5681..6199 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="Phi48:1_gp12" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:S0A4Q9" FT /protein_id="AGO49412.1" FT /translation="MNCVNCAHFKFHLKGNINIGLCSHWVESVDAVSSCDSYTRYIGTA FT SHDPLSINGKTYPHFIALNRGYDWGTGLPLSFRTICAIAANYKIDISLLEQFKNRNLTN FT KRKLNLKVKRVAIHRPVKRFKSVDAVKMLIIDELYKSHELHSTGFISDTTHNVLYSTLS FT ELKTHIQRL" FT gene 6196..6453 FT /locus_tag="Phi48:1_pg13" FT CDS 6196..6453 FT /codon_start=1 FT /transl_table=11 FT /locus_tag="Phi48:1_pg13" FT /product="structural protein" FT /note="annotation based on similarity to Cellulophaga phage FT phi18:4_gp13" FT /db_xref="UniProtKB/TrEMBL:S0A533" FT /protein_id="AGO49413.1" FT /translation="MILPNTWFCIKYSDQTNVKWFRAKKGRRKDSVLKYFRSKPNFKWG FT KVFTAHEKTLLFWFNASTEGISDRRTSNKIKPNENESNHA" XX SQ Sequence 6478 BP; 2146 A; 942 C; 1274 G; 2116 T; 0 other; ctttttttaa acttttctcg ctatgtcaat gaagtaatct tgcgtagcaa atcaaaacaa 60 attaattata aaattattca acatgaaatt atcggaaaaa atatttaacg ctctttgtta 120 tgctcttaaa atgcaattat taattaatgc cttaatcctc tttgttttgt tcgtgtgggg 180 tgttgtatta atcattaaag ggtagttaaa atgttcaaag aagcaataaa aaacgcaaac 240 gtccccatac agtataacgg ggacttactc gacaataaat tgatgtttgt aacggattat 300 atgattttaa gccttaaggg tatacctatt gtacaggata caaacggctt aaaattttca 360 cctagggact acggtacagc aatttttaaa gacgtactcg atgtaaccat agacggtaac 420 atattcggaa ctatttcgtg ctcacctcgc tcacctattg taccgtttga tactgtacat 480 tttaagctag aaaatagttt gttttatact aaaccaggtt tccaattatt acactattgt 540 aatagacttt taaacaccct acaaattgaa tttaaaggtg ttaatcgctt agatttggcg 600 gtcgattata ctgacacaag tataactaaa aacgttttaa cgtgtcttac ttctaaatcg 660 tttcgtatgt ctgggcgtaa aaaggaagta aagtttttct ccgtgaccga cacgggttat 720 attgattttc aaggggttca aattggtaag cgtacctcta gccgtttttg tagaatatat 780 aataaaacgt tggaaatgaa tacccagaaa atgaaaccgt atattgctaa tgcttggcgc 840 tcgcatggta tgcaaggtga aatttggcgt tttgaatatc aattaaattc taagtttatg 900 agtgaaatta aaggtttaac gctcaataat ttgtttcaaa aggatttcct tattagcttg 960 ttagaaatgg cacgcaaaaa ccattttgaa ataaaattca atacaaacaa aagtgaaatt 1020 aataaagaaa aaactttcga ttttatgcct atgtcaatta ttagggaatt ggcaaaaatt 1080 ccgtttttgt atgttgaaaa aattaaacgt tgtatttccg agtccttaat tgggcagaag 1140 cgacttataa aaggcttaat gcgtggctat gcttcaacgg ggcagaatat taaatattta 1200 tcccctttaa aacagatatt aaacgacttt gttctgtccg agtggttttt tcagaaggtg 1260 ggttattatt ttgatgagtt taaaaaacaa cagctttcta aaaatctttc atttacttta 1320 tttactaaac attttaggga attatgagaa taacaaacaa acaactagcc gtttatattg 1380 gagtatctga aagggtggta aaaaggcata ggctgtacta tattagttgt ttacagctta 1440 aacgtaatta tcttacttta tatgatataa gccgtttaga cggtgtccct gtggttgtgg 1500 tggctcgtat aatggggttt cccaattcaa ttatcaataa aatatcggaa gataacggaa 1560 gataacggaa gatttaagcg tttaacggag tttttaccgt tttactcaag aaatctgttt 1620 tatatttgca tcttaattaa tataaaccta aaatttattt aaaatgttgg tgtacaatga 1680 aacgggtaaa accaagtccg gtgagttaag aattactcgc cctatctcaa gcttactaat 1740 tagaacttca aagaagctat ctgaattagc gaatgagaaa attacaattt ttattgaaaa 1800 ggcgaacggg aacaacgtgg aaatcgctac aaatattagc ttagttgctt ttatgatggg 1860 cggtacttac ggggagtctg gaacttttca aatgcaatta gatggtagtg tcgtaaatac 1920 tgctatggtt gaattatctg aaacgggtag tgttctatta ggtgagaacg aaagtattaa 1980 aatactttta actgacttaa caagtacagc tacttacgct attaacggga tggagtcacc 2040 tattaagggt agtgacattg tgaaatacga gcgtaaagta gtattgactg aagatgtgca 2100 aagaaagtat gacgtatcaa gccatgaatt aatgattctt gacggtgttt ctcatattga 2160 ccaagcgcac attacgtata acaatggtga aactattaag ttaactagtg atgaaattaa 2220 agcggttgct ttagatgtag acgtattaac tgctattgaa ggtggctctg ttgttactta 2280 tgttaatgat ttaattgtgt tcccgttggt tggggttgat gcaattgagt tgtttaaatc 2340 aaatggatta ataacattga cgttaaaaga cgcaaattta aattactagg gttatgggat 2400 ttttcaaaaa tattttcaaa aagaaaaaag gcggtacttt tttgggtaac ttggttaggg 2460 gcgtttcttc gtctgctacg ggtggtatct tggggagtgg tgcaggtctt gcaaagtggg 2520 aagcggaaca ggctcaaaag gaacaagatg caatggtagc acaacaagtg caaaattcta 2580 gtgcttataa agtgggtact gctgtcggtt tacaggctaa accatacgtt gatgctgtga 2640 aaaactcgga agaggttgca gacgctaaaa aatcaatgat tttggactgg ttgaaaacaa 2700 actggattaa gttattaata cctattgtat tgttgacttt gttagttgta tggttaatca 2760 gacgtaacaa aaatggtaat caatcaggcg gtactcgcta caaaaaagct aaataagatg 2820 gcaaatagaa attataacaa ttcgaaccgc aatggcggtt cgaatttttc tcaaaatcag 2880 aataataatc aacctcaatt taaaaaatcg ggtgtggttt atagtcctat taaaggtcgt 2940 gacggtcttt atatggttaa tgcttggaac gcttcaaaga agggtttagt gcttgccaaa 3000 tgctttccgt atcatgctac tacagataaa agtggggcta tattggtcgt gacttctgca 3060 aagaataaca cctatataaa aatgatgtgt gaaattactt atcgtaaaac gggtatcact 3120 cggttactgc cttgccttat gaatattgaa actcaagtta ttgcgttaag tgaactaggt 3180 atggttatca gtccaaacgg gcacggtaaa actagaaacg gtaaaacggc taagggttac 3240 tttggtacgt tcacaggtta aaataaaagt taaataggat cgggcttttg cctttaaaac 3300 aataattatg aaaatagttg gtatcattac aaagtatatt gcatttgcaa taaaatacgc 3360 gggcatagtg ctcgttgttg tggaaatctt agcatttgcg caaactaagt tagaacagtt 3420 taacacaaaa accgtaaagg atgaaagcga cgttaacaaa gcttaagatt tgggtgttga 3480 tttggtggta taaaaacctt aacggatatg gtaacatctc cgttaaatta ctttacagtc 3540 aagcatggca cgaaacgggg aatttcaaaa gtgcagtata tgaagaaaat aaaaacctct 3600 ttgggatgcg tcacccgtcg aaacgtaaaa cgttatcgct tggctcaaat ttatctcacg 3660 ctaggtataa aaatcataaa gattctatta tcgattattt ctataggcag caaaatttta 3720 gaattgctaa cgttagtgat gaacaatata tggaagcaac cgtgaaaagt aattatgcgg 3780 aagacaaaaa ttattatgca aagtggaagg caatttattt aaagatgaaa cttccagttg 3840 ataacaagct tttgtatatg gttgggcttt tttttttggt ggtcatagtc tataagttta 3900 tacgttctag ggattggtcg accaaaacag accgcaaaaa agataataaa caacaaacaa 3960 ttaacataaa tacacatggt aaagtttatg caactaagta aaaaatattg gtatgtctta 4020 gtaatactag cggctttaat tgccttttgg atttataaaa tattcaaaaa aaaaccaact 4080 tcgcaaactg aagcaagtga caaaatcttg ataaaggaag gggttacatt taatgaccaa 4140 gcaaagaggg acttaaataa tacagcgatt caaatcgcac agcatttagg tacttctttc 4200 ccatggtacg accctaggtc gtggtctgaa aacgacgaag atttattcaa aataattttg 4260 cctttatctc aaaaggaatt tgatttagta gctaaattat attttggggt ttatgcaaag 4320 ggtagggatt tacgtgttga ccttgctaac cttttggatg caaagtacta cgaacaatta 4380 aacgttaagt agtggtagtc ggttatttta taggtgtgaa cagggatttc aaattaattg 4440 aaatccccgt tctatttgaa aatgagattt tcagcactaa agagtttttt gaagacgttc 4500 ttttgtttga tttatttatc aatcaacagc gttattttta caggggtttc aatgctgctg 4560 aaactcacgc atttaacaat acgttgagtg tagagcttat tcaagagcgt tattttcgtt 4620 cggaggggca aaaattagag tttaacatgg ggcatatttt taggctttcg tgttgtgatt 4680 ttgctagtcg tattccttca cgttctgagt tggctcttcc tgactacgac cctctattta 4740 cttttaatgt tgtaaatggt ccaaattcta actatgcgtt gcataatttt gcttatggtc 4800 tttatagtac gggtggtcaa tttataccta ctataataga agattttaag gctgacacta 4860 atacggttgt atggcagtat cgattaagtg atgtggtagg taaagagatt gcttttattg 4920 cttttgaccc taacggaagt aatgttttta ctttggaagt tgatggtgtg cagtatgctc 4980 aagaggggta tgtatatgta tttggttcac aaagtgcgga cgttgtaaaa actgtaatta 5040 ttaatcaaac tttgcagtaa aatacataac tgttaaaata tagtgcaata catcgaataa 5100 ttgtaatttt ataacataca ttttgtaaag atagttatat ttgtaatggc tacagttgtc 5160 gtttgaattt acatactata aattatagta caattcacaa caatgatgag cgataaaaac 5220 ctcgtattgg ggttatgtct aactaagtta caagggggct ttgagttttt aacccttcgc 5280 ccctagtaac tatcttataa tcaatagtat gaatgctgaa ttaaaaaatg gtactagtca 5340 aagaaagcta gtaaaaatcg tcaaaacttc aaagaagctg ccgttaacta aacaaaacat 5400 tgttttattg cgtaataacg ggattgactg tgctgctctt caacgcactt tttcaaggtt 5460 ttactcgaca cgccgtgtcg gtcaactctt atttctaaaa tcaactattt taatagagtc 5520 tacaggtaag cctcacaagg aaattacgat agattgttct aggtggtctt ttgagcatcg 5580 tgtaactgtt atttcgggtg gctctcaaaa tgaatttgat tttgttgttg atggtgctcg 5640 agatttatgt attaagcttt ttaatcataa attactttaa ttgaattgcg taaactgtgc 5700 gcactttaaa tttcatctga aaggaaatat taatattggg ctttgttctc attgggttga 5760 aagtgttgac gctgtttcta gttgtgattc ttacacacgt tatataggta ctgcgtcgca 5820 tgacccttta agtattaatg gtaaaactta tccgcatttt atagctttaa ataggggtta 5880 tgattggggt actggtttac cgctttcctt tcgcactatc tgcgccatag ctgccaatta 5940 taaaatagat atctcgttac tcgaacaatt taaaaataga aatctgacaa acaaaaggaa 6000 attgaattta aaagttaaac gggttgcgat acatcgccct gttaagcgtt ttaaaagcgt 6060 tgatgctgtt aaaatgttaa ttattgatga gttgtataaa tcacatgagt tgcatagtac 6120 ggggttcatt agtgatacaa cgcataatgt tttatactcc actttatcag aattaaaaac 6180 ccatatacaa agattatgat tttacccaat acgtggtttt gtattaagta cagcgaccaa 6240 actaatgtta agtggtttcg agccaaaaaa ggaaggcgta aagattcggt tctaaaatat 6300 tttagaagta aacctaattt taaatggggt aaggttttca ccgctcacga aaaaaccctt 6360 ttattttggt ttaatgctag tacagaggga attagtgacc gtcgtactag caacaaaatt 6420 aaacctaatg aaaatgaaag taatcatgcg tagctaatac gtaaagtgat gcaagcta 6478 //