ID JX412914; SV 1; circular; genomic DNA; STD; VRL; 6407 BP. XX AC JX412914; XX DT 27-AUG-2012 (Rel. 113, Created) DT 27-AUG-2012 (Rel. 113, Last updated, Version 1) XX DE Enterobacteria phage M13 isolate WT variety Rutgers, complete genome. XX KW . XX OS Escherichia virus M13 OC Viruses; Inoviridae; Inovirus. XX RN [1] RP 1-6407 RA Messing J., Ayer J.J.; RT "Phage M13, WT variety Rutgers"; RL Unpublished. XX RN [2] RP 1-6407 RA Messing J., Ayer J.J.; RT ; RL Submitted (20-JUL-2012) to the INSDC. RL Waksman Institute of Microbiology, Rutgers, the State University of New RL Jersey, 190 Frelinghuysen Road, Piscataway, NJ 08854, USA XX DR MD5; 67f6427049e202faf2b5394ee349828e. DR EuropePMC; PMC4308010; 25608871. DR EuropePMC; PMC4888304; 27257543. XX CC ##Assembly-Data-START## CC Assembly Method :: DNASTAR Lasergene SeqMan Pro v. 8.0.2(13) CC Sequencing Technology :: AB3730x1 DNA Analyzer CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..6407 FT /organism="Escherichia virus M13" FT /host="Escherichia coli" FT /isolate="WT variety Rutgers" FT /mol_type="genomic DNA" FT /country="USA" FT /collection_date="07-Apr-2010" FT /db_xref="taxon:1977402" FT gene join(6006..6407,1..831) FT /gene="II" FT CDS join(6006..6407,1..831) FT /codon_start=1 FT /transl_table=11 FT /gene="II" FT /product="hypothetical protein" FT /db_xref="GOA:J7I3Z6" FT /db_xref="InterPro:IPR006516" FT /db_xref="InterPro:IPR022686" FT /db_xref="InterPro:IPR022688" FT /db_xref="UniProtKB/TrEMBL:J7I3Z6" FT /protein_id="AFQ21789.1" FT /translation="MIDMLVLRLPFIDSLVCSRLSGNDLIAFVDLSKIATLSGINLSAR FT TVEYHIDGDLTVSGLSHPFESLPTHYSGIAFKIYEGSKNFYPCVEIKASPAKVLQGHNV FT FGTTDLALCSEALLLNFANSLPCLYDLLDVNATTISRIDATFSARAPNENIAKQVIDHL FT RNVSNGQTKSTRSQNWESTVTWNETSRHRTLVAYLKHVELQHQIQQLSSKPSAKMTSYQ FT KEQLKVLSNPDLLEFASGLVRFEARIKTRYLKSFGLPLNLFDAIRFASDYNSQGKDLIF FT DLWSFSFSELFKAFEGDSMNIYDDSAVLDAIQSKHFTITPSGKTSFAKASRYFGFYRRL FT VNEGYDSVALTMPRNSFWRYVSALVECGIPKSQLMNLSTCNNVVPLVRFINVDFSSQRP FT DWYNEPVLKIA" FT gene 496..831 FT /gene="X" FT CDS 496..831 FT /codon_start=1 FT /transl_table=11 FT /gene="X" FT /product="hypothetical protein" FT /db_xref="GOA:J7I4I2" FT /db_xref="InterPro:IPR006516" FT /db_xref="InterPro:IPR022688" FT /db_xref="UniProtKB/TrEMBL:J7I4I2" FT /protein_id="AFQ21797.1" FT /translation="MNIYDDSAVLDAIQSKHFTITPSGKTSFAKASRYFGFYRRLVNEG FT YDSVALTMPRNSFWRYVSALVECGIPKSQLMNLSTCNNVVPLVRFINVDFSSQRPDWYN FT EPVLKIA" FT gene 843..1106 FT /gene="V" FT CDS 843..1106 FT /codon_start=1 FT /transl_table=11 FT /gene="V" FT /product="helix destabilizing protein" FT /db_xref="GOA:J7I4H7" FT /db_xref="InterPro:IPR003512" FT /db_xref="InterPro:IPR012340" FT /db_xref="UniProtKB/TrEMBL:J7I4H7" FT /protein_id="AFQ21792.1" FT /translation="MIKVEIKPSQAQFTTRSGVSRQGKPYSLNEQLCYVDLGNEYPVLV FT KITLDEGQPAYAPGLYTVHLSSFKVGQFGSLMIDRLRLVPAK" FT gene 1108..1209 FT /gene="VII" FT CDS 1108..1209 FT /codon_start=1 FT /transl_table=11 FT /gene="VII" FT /product="phage assembly protein" FT /db_xref="GOA:J7I400" FT /db_xref="InterPro:IPR031377" FT /db_xref="UniProtKB/TrEMBL:J7I400" FT /protein_id="AFQ21794.1" FT /translation="MEQVADFDTIYQAMIQISVVLCFALGIIAGGQR" FT gene 1206..1304 FT /gene="IX" FT CDS 1206..1304 FT /codon_start=1 FT /transl_table=11 FT /gene="IX" FT /product="hypothetical protein" FT /db_xref="UniProtKB/TrEMBL:J7HXF5" FT /protein_id="AFQ21796.1" FT /translation="MSVLVYSFASFVLGWCLRSGITYFTRLMETSS" FT gene 1301..1522 FT /gene="VIII" FT CDS 1301..1522 FT /codon_start=1 FT /transl_table=11 FT /gene="VIII" FT /product="major coat protein" FT /note="structural protein" FT /db_xref="GOA:J7I0P6" FT /db_xref="InterPro:IPR008020" FT /db_xref="InterPro:IPR023390" FT /db_xref="UniProtKB/TrEMBL:J7I0P6" FT /protein_id="AFQ21795.1" FT /translation="MKKSLVLKASVAVATLVPMLSFAAEGDDPAKAAFNSLQASATEYI FT GYAWAMVVVIVGATIGIKLFKKFTSKAS" FT gene 1579..2853 FT /gene="III" FT CDS 1579..2853 FT /codon_start=1 FT /transl_table=11 FT /gene="III" FT /product="structural protein" FT /db_xref="GOA:J7I0P3" FT /db_xref="InterPro:IPR008021" FT /db_xref="InterPro:IPR013834" FT /db_xref="InterPro:IPR036200" FT /db_xref="UniProtKB/TrEMBL:J7I0P3" FT /protein_id="AFQ21790.1" FT /translation="MKKLLFAIPLVVPFYSHSAETVESCLAKPHTENSFTNVWKDDKTL FT DRYANYEGCLWNATGVVVCTGDETQCYGTWVPIGLAIPENEGGGSEGGGSEGGGSEGGG FT TKPPEYGDTPIPGYTYINPLDGTYPPGTEQNPANPNPSLEESQPLNTFMFQNNRFRNRQ FT GALTVYTGTFTQGTDPVKTYYQYTPVSSKAMYDAYWNGKFRDCAFHSGFNEDPFVCEYQ FT GQSSDLPQPPVNAGGGSGGGSGGGSEGGGSEGGGSEGGGSEGGGSGGGSGSGDFDYEKM FT ANANKGAMTENADENALQSDAKGKLDSVATDYGAAIDGFIGDVSGLANGNGATGDFAGS FT NSQMAQVGDGDNSPLMNNFRQYLPSLPQSVECRPFVFGAGKPYEFSIDCDKINLFRGVF FT AFLLYVATFMYVFSTFANILRNKES" FT variation 1579 FT /gene="III" FT /replace="a" FT /compare=V00604.2 FT /note="nonsynonymous substitution results in an alternative FT methionine start codon" FT variation 1737 FT /gene="III" FT /replace="t" FT /compare=V00604.2 FT /note="silent mutation" FT variation 2095 FT /gene="III" FT /replace="g" FT /compare=V00604.2 FT /note="nonsynonymous substitution results in phenylalanine FT to valine substitution" FT variation 2710 FT /gene="III" FT /replace="a" FT /compare=V00604.2 FT /note="nonsynonymous substitution results in glycine to FT serine substitution" FT gene 2856..3194 FT /gene="VI" FT CDS 2856..3194 FT /codon_start=1 FT /transl_table=11 FT /gene="VI" FT /product="small hydrophobic protein" FT /db_xref="GOA:J7HX75" FT /db_xref="InterPro:IPR035210" FT /db_xref="UniProtKB/TrEMBL:J7HX75" FT /protein_id="AFQ21793.1" FT /translation="MPVLLGIPLLLRFLGFLLVTLFGYLLTFLKKGFGKIAIAISLFLA FT LIIGLNSILVGYLSDISAQLPSDFVQGVQLILPSNALPCFYVILSVKAAIFIFDVKQKI FT VSYLDWDK" FT gene 3196..4242 FT /gene="I" FT CDS 3196..4242 FT /codon_start=1 FT /transl_table=11 FT /gene="I" FT /product="phage assembly protein" FT /db_xref="InterPro:IPR008900" FT /db_xref="UniProtKB/TrEMBL:J7HX71" FT /protein_id="AFQ21788.1" FT /translation="MAVYFVTGKLGSGKTLVSVGKIQDKIVAGCKIATNLDLRLQNLPQ FT VGRFAKTPRVLRIPDKPSISDLLAIGRGNDSYDENKNGLLVLDECGTWFNTRSWNDKER FT QPIIDWFLHARKLGWDIIFLVQDLSIVDKQARSALAEHVVYCRRLDRITLPFVGTLYSL FT ITGSKMPLPKLHVGVVKYGDSQLSPTVERWLYTGKNLYNAYDTKQAFSSNYDSGVYSYL FT TPYLSHGRYFKPLNLGQKMKLTKIYLKKFSRVLCLAIGFASAFTYSYITQPKPEVKKVV FT SQTYDFDKFTIDSSQRLNLSYRYVFKDSKGKLINSDDLQKQGYSLTYIDLCTVSIKKGN FT SNEIVKCN" FT gene 4220..5500 FT /gene="IV" FT CDS 4220..5500 FT /codon_start=1 FT /transl_table=11 FT /gene="IV" FT /product="phage assembly protein" FT /db_xref="GOA:J7HXF0" FT /db_xref="InterPro:IPR001775" FT /db_xref="InterPro:IPR004845" FT /db_xref="InterPro:IPR004846" FT /db_xref="InterPro:IPR038591" FT /db_xref="UniProtKB/TrEMBL:J7HXF0" FT /protein_id="AFQ21791.1" FT /translation="MKLLNVINFVFLMFVSSSSFAQVIEMNNSPLRDFVTWYSKQSGES FT VIVSPDVKGTVTVYSSDVKPENLRNFFISVLRANNFDMVGSNPSIIQKYNPNNQDYIDE FT LPSSDNQEYDDNSAPSGGFFVPQNDNVTQTFKINNVRAKDLIRVVELFVKSNTSKSSNV FT LSIDGSNLLVVSAPKDILDNLPQFLSTVDLPTDQILIEGLIFEVQQGDALDFSFAAGSQ FT RGTVAGGVNTDRLTSVLSSAGGSFGIFNGDVLGLSVRALKTNSHSKILSVPRILTLSGQ FT KGSISVGQNVPFITGRVTGESANVNNPFQTIERQNVGISMSVFPVAMAGGNIVLDITSK FT ADSLSSSTQASDVITNQRSIATTVNLRDGQTLLLGGLTDYKNTSQDSGVPFLSKIPLIG FT LLFSSRSDSNEESTLYVLVKATIVRAL" FT variation 4453 FT /gene="IV" FT /replace="t" FT /compare=V00604.2 FT /note="silent mutation" FT variation 4471 FT /gene="IV" FT /replace="t" FT /compare=V00604.2 FT /note="silent mutation" FT variation 4477 FT /gene="IV" FT /replace="a" FT /compare=V00604.2 FT /note="silent mutation" FT variation 4479..4480 FT /gene="IV" FT /replace="tt" FT /compare=V00604.2 FT /note="nonsynonymous substitution results in arginine to FT isoleucine substitution" FT variation 4489 FT /gene="IV" FT /replace="a" FT /compare=V00604.2 FT /note="silent mutation" FT variation 4747 FT /gene="IV" FT /replace="a" FT /compare=V00604.2 FT /note="silent mutation" FT variation 4786 FT /gene="IV" FT /replace="t" FT /compare=V00604.2 FT /note="silent mutation" FT variation 5374 FT /gene="IV" FT /replace="a" FT /compare=V00604.2 FT /note="silent mutation" FT variation 5443 FT /gene="IV" FT /replace="c" FT /compare=V00604.2 FT /note="silent mutation" FT variation 6125 FT /gene="II" FT /replace="g" FT /compare=V00604.2 FT /note="nonsynonymous substitution results in isoleucine to FT methionine substitution" XX SQ Sequence 6407 BP; 1574 A; 1297 C; 1315 G; 2221 T; 0 other; aacgctacta ctattagtag aattgatgcc accttttcag ctcgcgcccc aaatgaaaat 60 atagctaaac aggttattga ccatttgcga aatgtatcta atggtcaaac taaatctact 120 cgttcgcaga attgggaatc aactgttaca tggaatgaaa cttccagaca ccgtacttta 180 gttgcatatt taaaacatgt tgagctacag caccagattc agcaattaag ctctaagcca 240 tccgcaaaaa tgacctctta tcaaaaggag caattaaagg tactctctaa tcctgacctg 300 ttggagtttg cttccggtct ggttcgcttt gaagctcgaa ttaaaacgcg atatttgaag 360 tctttcgggc ttcctcttaa tctttttgat gcaatccgct ttgcttctga ctataatagt 420 cagggtaaag acctgatttt tgatttatgg tcattctcgt tttctgaact gtttaaagca 480 tttgaggggg attcaatgaa tatttatgac gattccgcag tattggacgc tatccagtct 540 aaacatttta ctattacccc ctctggcaaa acttcttttg caaaagcctc tcgctatttt 600 ggtttttatc gtcgtctggt aaacgagggt tatgatagtg ttgctcttac tatgcctcgt 660 aattcctttt ggcgttatgt atctgcatta gttgaatgtg gtattcctaa atctcaactg 720 atgaatcttt ctacctgtaa taatgttgtt ccgttagttc gttttattaa cgtagatttt 780 tcttcccaac gtcctgactg gtataatgag ccagttctta aaatcgcata aggtaattca 840 caatgattaa agttgaaatt aaaccatctc aagcccaatt tactactcgt tctggtgttt 900 ctcgtcaggg caagccttat tcactgaatg agcagctttg ttacgttgat ttgggtaatg 960 aatatccggt tcttgtcaag attactcttg atgaaggtca gccagcctat gcgcctggtc 1020 tgtacaccgt tcatctgtcc tctttcaaag ttggtcagtt cggttccctt atgattgacc 1080 gtctgcgcct cgttccggct aagtaacatg gagcaggtcg cggatttcga cacaatttat 1140 caggcgatga tacaaatctc cgttgtactt tgtttcgcgc ttggtataat cgctgggggt 1200 caaagatgag tgttttagtg tattctttcg cctctttcgt tttaggttgg tgccttcgta 1260 gtggcattac gtattttacc cgtttaatgg aaacttcctc atgaaaaagt ctttagtcct 1320 caaagcctct gtagccgttg ctaccctcgt tccgatgctg tctttcgctg ctgagggtga 1380 cgatcccgca aaagcggcct ttaactccct gcaagcctca gcgaccgaat atatcggtta 1440 tgcgtgggcg atggttgttg tcattgtcgg cgcaactatc ggtatcaagc tgtttaagaa 1500 attcacctcg aaagcaagct gataaaccga tacaattaaa ggctcctttt ggagcctttt 1560 tttttggaga ttttcaacgt gaaaaaatta ttattcgcaa ttcctttagt tgttcctttc 1620 tattctcact ccgctgaaac tgttgaaagt tgtttagcaa aaccccatac agaaaattca 1680 tttactaacg tctggaaaga cgacaaaact ttagatcgtt acgctaacta tgagggctgt 1740 ctgtggaatg ctacaggcgt tgtagtttgt actggtgacg aaactcagtg ttacggtaca 1800 tgggttccta ttgggcttgc tatccctgaa aatgagggtg gtggctctga gggtggcggt 1860 tctgagggtg gcggttctga gggtggcggt actaaacctc ctgagtacgg tgatacacct 1920 attccgggct atacttatat caaccctctc gacggcactt atccgcctgg tactgagcaa 1980 aaccccgcta atcctaatcc ttctcttgag gagtctcagc ctcttaatac tttcatgttt 2040 cagaataata ggttccgaaa taggcagggg gcattaactg tttatacggg cacttttact 2100 caaggcactg accccgttaa aacttattac cagtacactc ctgtatcatc aaaagccatg 2160 tatgacgctt actggaacgg taaattcaga gactgcgctt tccattctgg ctttaatgag 2220 gatccattcg tttgtgaata tcaaggccaa tcgtctgacc tgcctcaacc tcctgtcaat 2280 gctggcggcg gctctggtgg tggttctggt ggcggctctg agggtggtgg ctctgagggt 2340 ggcggttctg agggtggcgg ctctgaggga ggcggttccg gtggtggctc tggttccggt 2400 gattttgatt atgaaaagat ggcaaacgct aataaggggg ctatgaccga aaatgccgat 2460 gaaaacgcgc tacagtctga cgctaaaggc aaacttgatt ctgtcgctac tgattacggt 2520 gctgctatcg atggtttcat tggtgacgtt tccggccttg ctaatggtaa tggtgctact 2580 ggtgattttg ctggctctaa ttcccaaatg gctcaagtcg gtgacggtga taattcacct 2640 ttaatgaata atttccgtca atatttacct tccctccctc aatcggttga atgtcgccct 2700 tttgtctttg gcgctggtaa accatatgaa ttttctattg attgtgacaa aataaactta 2760 ttccgtggtg tctttgcgtt tcttttatat gttgccacct ttatgtatgt attttctacg 2820 tttgctaaca tactgcgtaa taaggagtct taatcatgcc agttcttttg ggtattccgt 2880 tattattgcg tttcctcggt ttccttctgg taactttgtt cggctatctg cttacttttc 2940 ttaaaaaggg cttcggtaag atagctattg ctatttcatt gtttcttgct cttattattg 3000 ggcttaactc aattcttgtg ggttatctct ctgatattag cgctcaatta ccctctgact 3060 ttgttcaggg tgttcagtta attctcccgt ctaatgcgct tccctgtttt tatgttattc 3120 tctctgtaaa ggctgctatt ttcatttttg acgttaaaca aaaaatcgtt tcttatttgg 3180 attgggataa ataatatggc tgtttatttt gtaactggca aattaggctc tggaaagacg 3240 ctcgttagcg ttggtaagat tcaggataaa attgtagctg ggtgcaaaat agcaactaat 3300 cttgatttaa ggcttcaaaa cctcccgcaa gtcgggaggt tcgctaaaac gcctcgcgtt 3360 cttagaatac cggataagcc ttctatatct gatttgcttg ctattgggcg cggtaatgat 3420 tcctacgatg aaaataaaaa cggcttgctt gttctcgatg agtgcggtac ttggtttaat 3480 acccgttctt ggaatgataa ggaaagacag ccgattattg attggtttct acatgctcgt 3540 aaattaggat gggatattat ttttcttgtt caggacttat ctattgttga taaacaggcg 3600 cgttctgcat tagctgaaca tgttgtttat tgtcgtcgtc tggacagaat tactttacct 3660 tttgtcggta ctttatattc tcttattact ggctcgaaaa tgcctctgcc taaattacat 3720 gttggcgttg ttaaatatgg cgattctcaa ttaagcccta ctgttgagcg ttggctttat 3780 actggtaaga atttgtataa cgcatatgat actaaacagg ctttttctag taattatgat 3840 tccggtgttt attcttattt aacgccttat ttatcacacg gtcggtattt caaaccatta 3900 aatttaggtc agaagatgaa attaactaaa atatatttga aaaagttttc tcgcgttctt 3960 tgtcttgcga ttggatttgc atcagcattt acatatagtt atataaccca acctaagccg 4020 gaggttaaaa aggtagtctc tcagacctat gattttgata aattcactat tgactcttct 4080 cagcgtctta atctaagcta tcgctatgtt ttcaaggatt ctaagggaaa attaattaat 4140 agcgacgatt tacagaagca aggttattca ctcacatata ttgatttatg tactgtttcc 4200 attaaaaaag gtaattcaaa tgaaattgtt aaatgtaatt aattttgttt tcttgatgtt 4260 tgtttcatca tcttcttttg ctcaggtaat tgaaatgaat aattcgcctc tgcgcgattt 4320 tgtaacttgg tattcaaagc aatcaggcga atccgttatt gtttctcccg atgtaaaagg 4380 tactgttact gtatattcat ctgacgttaa acctgaaaat ctacgcaatt tctttatttc 4440 tgttttacgt gcaaataatt ttgatatggt aggttctaac ccttccatta ttcagaagta 4500 taatccaaac aatcaggatt atattgatga attgccatca tctgataatc aggaatatga 4560 tgataattcc gctccttctg gtggtttctt tgttccgcaa aatgataatg ttactcaaac 4620 ttttaaaatt aataacgttc gggcaaagga tttaatacga gttgtcgaat tgtttgtaaa 4680 gtctaatact tctaaatcct caaatgtatt atctattgac ggctctaatc tattagttgt 4740 tagtgctcct aaagatattt tagataacct tcctcaattc ctttcaactg ttgatttgcc 4800 aactgaccag atattgattg agggtttgat atttgaggtt cagcaaggtg atgctttaga 4860 tttttcattt gctgctggct ctcagcgtgg cactgttgca ggcggtgtta atactgaccg 4920 cctcacctct gttttatctt ctgctggtgg ttcgttcggt atttttaatg gcgatgtttt 4980 agggctatca gttcgcgcat taaagactaa tagccattca aaaatattgt ctgtgccacg 5040 tattcttacg ctttcaggtc agaagggttc tatctctgtt ggccagaatg tcccttttat 5100 tactggtcgt gtgactggtg aatctgccaa tgtaaataat ccatttcaga cgattgagcg 5160 tcaaaatgta ggtatttcca tgagcgtttt tcctgttgca atggctggcg gtaatattgt 5220 tctggatatt accagcaagg ccgatagttt gagttcttct actcaggcaa gtgatgttat 5280 tactaatcaa agaagtattg ctacaacggt taatttgcgt gatggacaga ctcttttact 5340 cggtggcctc actgattata aaaacacttc tcaggattct ggcgtaccgt tcctgtctaa 5400 aatcccttta atcggcctcc tgtttagctc ccgctctgat tctaacgagg aaagcacgtt 5460 atacgtgctc gtcaaagcaa ccatagtacg cgccctgtag cggcgcatta agcgcggcgg 5520 gtgtggtggt tacgcgcagc gtgaccgcta cacttgccag cgccctagcg cccgctcctt 5580 tcgctttctt cccttccttt ctcgccacgt tcgccggctt tccccgtcaa gctctaaatc 5640 gggggctccc tttagggttc cgatttagtg ctttacggca cctcgacccc aaaaaacttg 5700 atttgggtga tggttcacgt agtgggccat cgccctgata gacggttttt cgccctttga 5760 cgttggagtc cacgttcttt aatagtggac tcttgttcca aactggaaca acactcaacc 5820 ctatctcggg ctattctttt gatttataag ggattttgcc gatttcggcc tattggttaa 5880 aaaatgagct gatttaacaa aaatttaacg cgaattttaa caaaatatta acgtttacaa 5940 tttaaatatt tgcttataca atcttcctgt ttttggggct tttctgatta tcaaccgggg 6000 tacatatgat tgacatgcta gttttacgat taccgttcat cgattctctt gtttgctcca 6060 gactctcagg caatgacctg atagcctttg tagacctctc aaaaatagct accctctccg 6120 gcattaattt atcagctaga acggttgaat atcatattga tggtgatttg actgtctccg 6180 gcctttctca cccttttgaa tctttaccta cacattactc aggcattgca tttaaaatat 6240 atgagggttc taaaaatttt tatccttgcg ttgaaataaa ggcttctccc gcaaaagtat 6300 tacagggtca taatgttttt ggtacaaccg atttagcttt atgctctgag gctttattgc 6360 ttaattttgc taattctttg ccttgcctgt atgatttatt ggatgtt 6407 //