ID   JX311891; SV 1; linear; genomic DNA; STD; VRT; 620 BP.
XX
AC   JX311891;
XX
DT   18-JUL-2014 (Rel. 121, Created)
DT   18-JUL-2014 (Rel. 121, Last updated, Version 1)
XX
DE   Cottus cf. rhotheus F1 isolate Spokane River cytochrome oxidase subunit 1
DE   (COI) gene, partial cds; mitochondrial.
XX
KW   .
XX
OS   Cottus cf. rhotheus F1
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata;
OC   Eupercaria; Perciformes; Cottioidei; Cottales; Cottidae; Cottus.
OG   Mitochondrion
XX
RN   [1]
RC   Publication Status: Online-Only
RP   1-620
RX   DOI; 10.11646/zootaxa.3755.3.3.
RX   PUBMED; 24869819.
RA   Lemoine M., Young M.K., Mckelvey K.S., Eby L., Pilgrim K.L., Schwartz M.K.;
RT   "Cottus schitsuumsh, a new species of sculpin (Scorpaeniformes: Cottidae)
RT   in the Columbia River basin, Idaho-Montana, USA";
RL   Zootaxa 3755(3):241-258(2014).
XX
RN   [2]
RP   1-620
RA   Young M.K., LeMoine M., Eby L., McKelvey K.S., Pilgrim K.L., Schwartz M.K.;
RT   ;
RL   Submitted (12-JUL-2012) to the INSDC.
RL   Rocky Mountain Research Station, USDA Forest Service, 800 East Beckwith
RL   Avenue, Missoula, MT 59801, USA
XX
DR   MD5; 9812623989cde29816916e47bd50d452.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..620
FT                   /organism="Cottus cf. rhotheus F1"
FT                   /organelle="mitochondrion"
FT                   /isolate="Spokane River"
FT                   /mol_type="genomic DNA"
FT                   /country="USA:Washington, Spokane River"
FT                   /lat_lon="47.7 N 117.04 W"
FT                   /isolation_source="stream"
FT                   /collected_by="C. Donley"
FT                   /collection_date="20-Aug-2011"
FT                   /haplotype="F1"
FT                   /PCR_primers="fwd_name: ff2d, fwd_seq:
FT                   ttctccaccaaccacaargayatygg, rev_name: fr1d, rev_seq:
FT                   cacctcagggtgtccgaaraaycaraa"
FT                   /db_xref="taxon:1330426"
FT   gene            <1..>620
FT                   /gene="COI"
FT   CDS             <1..>620
FT                   /codon_start=1
FT                   /transl_table=2
FT                   /gene="COI"
FT                   /product="cytochrome oxidase subunit 1"
FT                   /db_xref="GOA:A0A075BM74"
FT                   /db_xref="InterPro:IPR000883"
FT                   /db_xref="InterPro:IPR023616"
FT                   /db_xref="InterPro:IPR036927"
FT                   /db_xref="UniProtKB/TrEMBL:A0A075BM74"
FT                   /protein_id="AGM49419.1"
FT                   /translation="LYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHA
FT                   FVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAG
FT                   AGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGISSILGAINFITTIINMKPPAISQYQ
FT                   TPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAG"
XX
SQ   Sequence 620 BP; 138 A; 187 C; 113 G; 182 T; 0 other;
     ctatatctag tatttggtgc ttgagccgga atagtaggca cagctttaag cctcctaatt        60
     cgagcagaac taagccaacc cggcgccctc ttgggggacg accagattta caatgtaatt       120
     gttacagccc atgctttcgt aataattttc tttatagtaa taccaattat gatcggaggt       180
     ttcgggaact gactcgttcc cctaatgatt ggcgctcctg acatggcctt tcctcgaatg       240
     aataatatga gcttttgact tcttccccca tcttttttac tcctccttgc ctcttcggga       300
     gtcgaagcag gggccggaac cggatgaaca gtctacccgc ccctcgccgg aaatctcgcc       360
     cacgcaggag cctctgttga cctaacaatc ttttcccttc acctagcagg tatctcttct       420
     attcttggag caatcaactt tatcacaact attattaaca tgaagccccc tgctatctca       480
     caataccaga ccccgctctt tgtatggtct gttcttatta ctgccgtcct actgctcctt       540
     tccctccccg ttcttgccgc cggcatcaca atactcctga cagaccgaaa ccttaacacc       600
     accttctttg accctgccgg                                                   620
//