ID   JX311888; SV 1; linear; genomic DNA; STD; VRT; 620 BP.
XX
AC   JX311888;
XX
DT   18-JUL-2014 (Rel. 121, Created)
DT   18-JUL-2014 (Rel. 121, Last updated, Version 1)
XX
DE   Cottus cf. confusus D1 isolate Little NF Clearwater River cytochrome
DE   oxidase subunit 1 (COI) gene, partial cds; mitochondrial.
XX
KW   .
XX
OS   Cottus cf. confusus D1
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata;
OC   Eupercaria; Perciformes; Cottioidei; Cottales; Cottidae; Cottus.
OG   Mitochondrion
XX
RN   [1]
RC   Publication Status: Online-Only
RP   1-620
RX   DOI; 10.11646/zootaxa.3755.3.3.
RX   PUBMED; 24869819.
RA   Lemoine M., Young M.K., Mckelvey K.S., Eby L., Pilgrim K.L., Schwartz M.K.;
RT   "Cottus schitsuumsh, a new species of sculpin (Scorpaeniformes: Cottidae)
RT   in the Columbia River basin, Idaho-Montana, USA";
RL   Zootaxa 3755(3):241-258(2014).
XX
RN   [2]
RP   1-620
RA   Young M.K., LeMoine M., Eby L., McKelvey K.S., Pilgrim K.L., Schwartz M.K.;
RT   ;
RL   Submitted (12-JUL-2012) to the INSDC.
RL   Rocky Mountain Research Station, USDA Forest Service, 800 East Beckwith
RL   Avenue, Missoula, MT 59801, USA
XX
DR   MD5; afbe6a4fe5753ca243bde0567b024064.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..620
FT                   /organism="Cottus cf. confusus D1"
FT                   /organelle="mitochondrion"
FT                   /isolate="Little NF Clearwater River"
FT                   /mol_type="genomic DNA"
FT                   /country="USA:Idaho, Little NF Clearwater River"
FT                   /lat_lon="47.07 N 115.85 W"
FT                   /isolation_source="stream"
FT                   /collected_by="M. Young"
FT                   /collection_date="29-Sep-2011"
FT                   /haplotype="D1"
FT                   /PCR_primers="fwd_name: ff2d, fwd_seq:
FT                   ttctccaccaaccacaargayatygg, rev_name: fr1d, rev_seq:
FT                   cacctcagggtgtccgaaraaycaraa"
FT                   /db_xref="taxon:1330424"
FT   gene            <1..>620
FT                   /gene="COI"
FT   CDS             <1..>620
FT                   /codon_start=1
FT                   /transl_table=2
FT                   /gene="COI"
FT                   /product="cytochrome oxidase subunit 1"
FT                   /db_xref="GOA:A0A075BKR9"
FT                   /db_xref="InterPro:IPR000883"
FT                   /db_xref="InterPro:IPR023616"
FT                   /db_xref="InterPro:IPR036927"
FT                   /db_xref="UniProtKB/TrEMBL:A0A075BKR9"
FT                   /protein_id="AGM49416.1"
FT                   /translation="LYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHA
FT                   FVMIFFMVMPIMIGGFGNWLIPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAG
FT                   AGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGISSILGAINFITTIINMKPPAISQYQ
FT                   TPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAG"
XX
SQ   Sequence 620 BP; 140 A; 183 C; 113 G; 184 T; 0 other;
     ctatatctag tatttggtgc ttgagccgga atagtaggca cagctttaag cctcctaatt        60
     cgagcagaac taagccaacc cggcgccctt ttgggggacg accagattta taatgtaatt       120
     gttacagccc atgctttcgt aataatcttc tttatagtga tgccaatcat aatcggaggt       180
     ttcgggaact gactcattcc cctaatgatt ggcgctcctg acatggcctt tcctcgaatg       240
     aataatatga gcttttgact tcttcccccc tcttttttac tcctccttgc ctcttcgggg       300
     gtcgaagcag gggccggaac aggatgaaca gtttatccgc ccctcgccgg aaacctcgcc       360
     cacgcaggag cctctgtaga cctaacaatc ttctcccttc acctagcagg tatctcctct       420
     attcttggag caatcaactt tattacgact atcattaata tgaaaccccc tgctatttca       480
     caataccaga cccccctctt cgtatggtct gttcttatta cggctgttct actgcttctt       540
     tccctccccg tacttgccgc cggtatcaca atactcctaa cagaccgaaa tcttaacacc       600
     accttctttg accctgccgg                                                   620
//