ID   JX311885; SV 1; linear; genomic DNA; STD; VRT; 620 BP.
XX
AC   JX311885;
XX
DT   18-JUL-2014 (Rel. 121, Created)
DT   18-JUL-2014 (Rel. 121, Last updated, Version 1)
XX
DE   Cottus cf. cognatus C1 isolate SF Marten Creek cytochrome oxidase subunit 1
DE   (COI) gene, partial cds; mitochondrial.
XX
KW   .
XX
OS   Cottus cf. cognatus C1
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata;
OC   Eupercaria; Perciformes; Cottioidei; Cottales; Cottidae; Cottus.
OG   Mitochondrion
XX
RN   [1]
RC   Publication Status: Online-Only
RP   1-620
RX   DOI; 10.11646/zootaxa.3755.3.3.
RX   PUBMED; 24869819.
RA   Lemoine M., Young M.K., Mckelvey K.S., Eby L., Pilgrim K.L., Schwartz M.K.;
RT   "Cottus schitsuumsh, a new species of sculpin (Scorpaeniformes: Cottidae)
RT   in the Columbia River basin, Idaho-Montana, USA";
RL   Zootaxa 3755(3):241-258(2014).
XX
RN   [2]
RP   1-620
RA   Young M.K., LeMoine M., Eby L., McKelvey K.S., Pilgrim K.L., Schwartz M.K.;
RT   ;
RL   Submitted (12-JUL-2012) to the INSDC.
RL   Rocky Mountain Research Station, USDA Forest Service, 800 East Beckwith
RL   Avenue, Missoula, MT 59801, USA
XX
DR   MD5; c2b93af37a05ef3cfea059ed386c3973.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..620
FT                   /organism="Cottus cf. cognatus C1"
FT                   /organelle="mitochondrion"
FT                   /isolate="SF Marten Creek"
FT                   /mol_type="genomic DNA"
FT                   /country="USA:Montana, SF Marten Creek"
FT                   /lat_lon="47.89 N 115.82 W"
FT                   /isolation_source="stream"
FT                   /collected_by="M. Young"
FT                   /collection_date="20-Sep-2011"
FT                   /haplotype="C1"
FT                   /PCR_primers="fwd_name: ff2d, fwd_seq:
FT                   ttctccaccaaccacaargayatygg, rev_name: fr1d, rev_seq:
FT                   cacctcagggtgtccgaaraaycaraa"
FT                   /db_xref="taxon:1330422"
FT   gene            <1..>620
FT                   /gene="COI"
FT   CDS             <1..>620
FT                   /codon_start=1
FT                   /transl_table=2
FT                   /gene="COI"
FT                   /product="cytochrome oxidase subunit 1"
FT                   /db_xref="GOA:A0A075BM73"
FT                   /db_xref="InterPro:IPR000883"
FT                   /db_xref="InterPro:IPR023616"
FT                   /db_xref="InterPro:IPR036927"
FT                   /db_xref="UniProtKB/TrEMBL:A0A075BM73"
FT                   /protein_id="AGM49413.1"
FT                   /translation="LYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHA
FT                   FVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAG
FT                   AGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGISSILGAINFITTIINMKPPAISQYQ
FT                   TPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAG"
XX
SQ   Sequence 620 BP; 143 A; 184 C; 108 G; 185 T; 0 other;
     ctatatctag tatttggtgc ttgagccgga atagtaggca cagctttaag cctcctaatt        60
     cgagcagaac taagccaacc cggcgccctt ttgggggacg accagattta taatgtaatt       120
     gttacagccc atgctttcgt aataattttc tttatagtaa taccaattat aatcggaggt       180
     ttcgggaact gactcgttcc cctaatgatt ggcgctcctg atatggcctt tcctcgaatg       240
     aataatatga gcttttgact tcttccccca tcttttttac tcctccttgc ctcttcggga       300
     gtcgaagcag gggccggaac cggatgaaca gtctacccac ccctcgccgg aaacctcgcc       360
     cacgcaggag cctctgttga cctaacaatc ttctcccttc acctagcagg tatctcctct       420
     attcttggag caatcaactt tatcacaact attattaaca taaaaccccc tgctatttca       480
     caataccaga ccccgctctt tgtatgatct gttcttatta ctgccgtcct actgcttctt       540
     tccctccccg ttcttgccgc cggcatcaca atactcctga cagaccgaaa tcttaacacc       600
     accttctttg accctgccgg                                                   620
//