ID   JX282589; SV 1; linear; genomic DNA; STD; VRT; 620 BP.
XX
AC   JX282589;
XX
DT   27-JUN-2013 (Rel. 117, Created)
DT   27-JUN-2018 (Rel. 137, Last updated, Version 2)
XX
DE   Cottus cf. confusus KLP-2013 haplotype D1 cytochrome oxidase subunit 1
DE   (COI) gene, partial cds; mitochondrial.
XX
KW   .
XX
OS   Cottus cf. confusus KLP-2013
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata;
OC   Eupercaria; Perciformes; Cottioidei; Cottales; Cottidae; Cottus.
OG   Mitochondrion
XX
RN   [1]
RP   1-620
RX   DOI; 10.1111/1755-0998.12091.
RX   PUBMED; 23496857.
RA   Young M.K., McKelvey K.S., Pilgrim K.L., Schwartz M.K.;
RT   "DNA barcoding at riverscape scales: assessing biodiversity among fishes of
RT   the genus Cottus (Teleostei) in northern Rocky Mountain streams";
RL   Mol Ecol Resour 13(4):583-595(2013).
XX
RN   [2]
RP   1-620
RA   Young M.K., McKelvey K.S., Pilgrim K.L., Schwartz M.K.;
RT   ;
RL   Submitted (06-JUL-2012) to the INSDC.
RL   Wildlife Genetics Lab, USDA Forest Service--RMRS, 800 E. Beckwith,
RL   Missoula, MT 59801, USA
XX
DR   MD5; afbe6a4fe5753ca243bde0567b024064.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..620
FT                   /organism="Cottus cf. confusus KLP-2013"
FT                   /organelle="mitochondrion"
FT                   /mol_type="genomic DNA"
FT                   /country="USA:Idaho, Crooked Fork Creek"
FT                   /lat_lon="46.66 N 114.68 W"
FT                   /isolation_source="stream"
FT                   /collected_by="M. Young"
FT                   /collection_date="15-Aug-2011"
FT                   /haplotype="D1"
FT                   /PCR_primers="fwd_name: ff2d, fwd_seq:
FT                   ttctccaccaaccacaargayatygg, rev_name: fr1d, rev_seq:
FT                   cacctcagggtgtccgaaraaycaraa"
FT                   /db_xref="taxon:1288834"
FT   gene            <1..>620
FT                   /gene="COI"
FT   CDS             <1..>620
FT                   /codon_start=1
FT                   /transl_table=2
FT                   /gene="COI"
FT                   /product="cytochrome oxidase subunit 1"
FT                   /db_xref="GOA:R9QVD5"
FT                   /db_xref="InterPro:IPR000883"
FT                   /db_xref="InterPro:IPR023616"
FT                   /db_xref="InterPro:IPR036927"
FT                   /db_xref="UniProtKB/TrEMBL:R9QVD5"
FT                   /protein_id="AGE14018.1"
FT                   /translation="LYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHA
FT                   FVMIFFMVMPIMIGGFGNWLIPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAG
FT                   AGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGISSILGAINFITTIINMKPPAISQYQ
FT                   TPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAG"
XX
SQ   Sequence 620 BP; 140 A; 183 C; 113 G; 184 T; 0 other;
     ctatatctag tatttggtgc ttgagccgga atagtaggca cagctttaag cctcctaatt        60
     cgagcagaac taagccaacc cggcgccctt ttgggggacg accagattta taatgtaatt       120
     gttacagccc atgctttcgt aataatcttc tttatagtga tgccaatcat aatcggaggt       180
     ttcgggaact gactcattcc cctaatgatt ggcgctcctg acatggcctt tcctcgaatg       240
     aataatatga gcttttgact tcttcccccc tcttttttac tcctccttgc ctcttcgggg       300
     gtcgaagcag gggccggaac aggatgaaca gtttatccgc ccctcgccgg aaacctcgcc       360
     cacgcaggag cctctgtaga cctaacaatc ttctcccttc acctagcagg tatctcctct       420
     attcttggag caatcaactt tattacgact atcattaata tgaaaccccc tgctatttca       480
     caataccaga cccccctctt cgtatggtct gttcttatta cggctgttct actgcttctt       540
     tccctccccg tacttgccgc cggtatcaca atactcctaa cagaccgaaa tcttaacacc       600
     accttctttg accctgccgg                                                   620
//