ID   JX282576; SV 1; linear; genomic DNA; STD; VRT; 620 BP.
XX
AC   JX282576;
XX
DT   27-JUN-2013 (Rel. 117, Created)
DT   27-JUN-2018 (Rel. 137, Last updated, Version 2)
XX
DE   Cottus cf. beldingii KLP-2013 haplotype B1 cytochrome oxidase subunit 1
DE   (COI) gene, partial cds; mitochondrial.
XX
KW   .
XX
OS   Cottus cf. beldingii KLP-2013
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC   Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata;
OC   Eupercaria; Perciformes; Cottioidei; Cottales; Cottidae; Cottus.
OG   Mitochondrion
XX
RN   [1]
RP   1-620
RX   DOI; 10.1111/1755-0998.12091.
RX   PUBMED; 23496857.
RA   Young M.K., McKelvey K.S., Pilgrim K.L., Schwartz M.K.;
RT   "DNA barcoding at riverscape scales: assessing biodiversity among fishes of
RT   the genus Cottus (Teleostei) in northern Rocky Mountain streams";
RL   Mol Ecol Resour 13(4):583-595(2013).
XX
RN   [2]
RP   1-620
RA   Young M.K., McKelvey K.S., Pilgrim K.L., Schwartz M.K.;
RT   ;
RL   Submitted (06-JUL-2012) to the INSDC.
RL   Wildlife Genetics Lab, USDA Forest Service--RMRS, 800 E. Beckwith,
RL   Missoula, MT 59801, USA
XX
DR   MD5; 7e57fb4b9438f40a0bafe6af1ccd7df2.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..620
FT                   /organism="Cottus cf. beldingii KLP-2013"
FT                   /organelle="mitochondrion"
FT                   /mol_type="genomic DNA"
FT                   /country="USA:Idaho, Feather Creek"
FT                   /lat_lon="46.92 N 116.4 W"
FT                   /isolation_source="stream"
FT                   /collected_by="M. Young"
FT                   /collection_date="06-Jul-2010"
FT                   /haplotype="B1"
FT                   /PCR_primers="fwd_name: ff2d, fwd_seq:
FT                   ttctccaccaaccacaargayatygg, rev_name: fr1d, rev_seq:
FT                   cacctcagggtgtccgaaraaycaraa"
FT                   /db_xref="taxon:1288832"
FT   gene            <1..>620
FT                   /gene="COI"
FT   CDS             <1..>620
FT                   /codon_start=1
FT                   /transl_table=2
FT                   /gene="COI"
FT                   /product="cytochrome oxidase subunit 1"
FT                   /db_xref="GOA:R9QUS7"
FT                   /db_xref="InterPro:IPR000883"
FT                   /db_xref="InterPro:IPR023616"
FT                   /db_xref="InterPro:IPR036927"
FT                   /db_xref="UniProtKB/TrEMBL:R9QUS7"
FT                   /protein_id="AGE14005.1"
FT                   /translation="LYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVVVTAHA
FT                   FVMIFFMVMPIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAG
FT                   AGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGISSILGAINFITTIINMKPPAISQYQ
FT                   TPLFVWSVLITAVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAG"
XX
SQ   Sequence 620 BP; 141 A; 178 C; 113 G; 188 T; 0 other;
     ctatatctag tatttggtgc ttgagccgga atagtgggca cagctttaag cctcctaatt        60
     cgagcagaac taagccaacc cggagccctt ttgggggacg accagattta taatgtagtt       120
     gttacagccc atgctttcgt aataattttc tttatagtaa taccaattat aattggaggt       180
     ttcgggaact gactcgttcc cctaatgatt ggcgctcctg atatggcctt tcctcgaatg       240
     aataatatga gcttttgact tcttccaccc tcttttctac tcctccttgc ctcttcgggg       300
     gtcgaagcag gggccggaac cggatggaca gtctaccccc cactcgcagg aaacctcgcc       360
     cacgcaggag cctctgttga cctaacaatc ttctcccttc acctagcagg tatttcctct       420
     attcttggag caattaattt tatcacaact atcattaata taaaaccccc tgctatctca       480
     caataccaga ccccactctt cgtatgatct gttcttatta ctgctgtcct tctgcttctc       540
     tctctccccg tacttgccgc cgggatcaca atgctcctga cagaccgaaa tcttaacacc       600
     accttttttg accctgccgg                                                   620
//