ID JQ966307; SV 1; linear; genomic RNA; STD; PHG; 3525 BP. XX AC JQ966307; XX DT 18-SEP-2012 (Rel. 114, Created) DT 18-SEP-2012 (Rel. 114, Last updated, Version 1) XX DE Enterobacterio phage MS2 isolate DL52, complete genome. XX KW . XX OS Enterobacteria phage MS2 OC Viruses; Riboviria; Leviviridae; Levivirus. XX RN [1] RP 1-3525 RX DOI; 10.3390/v4091548. RX PUBMED; 23170172. RA Friedman S.D., Snellgrove W.C., Genthner F.J.; RT "Genomic Sequences of two Novel Levivirus Single-Stranded RNA Coliphages RT (Family Leviviridae): Evidence for Recombinationin Environmental Strains"; RL Viruses 4(9):1548-1568(2012). XX RN [2] RP 1-3525 RA Friedman S.D.; RT ; RL Submitted (23-APR-2012) to the INSDC. RL US EPA, 1 Sabine Island Drive, Gulf Breeze, FL 32561, USA XX DR MD5; f0d06b3ef51f079c0a287e899b4bfb16. DR EuropePMC; PMC3499819; 23170172. DR EuropePMC; PMC4542260; 26162878. XX FH Key Location/Qualifiers FH FT source 1..3525 FT /organism="Enterobacteria phage MS2" FT /lab_host="Escherichia coli" FT /isolate="DL52" FT /mol_type="genomic RNA" FT /country="USA:Rachel Carson Reserve, NC" FT /isolation_source="bay water" FT /collection_date="2003" FT /db_xref="taxon:12022" FT CDS 132..1313 FT /codon_start=1 FT /transl_table=11 FT /product="maturation/assembly protein" FT /db_xref="GOA:J9QBZ5" FT /db_xref="InterPro:IPR005563" FT /db_xref="UniProtKB/TrEMBL:J9QBZ5" FT /protein_id="AFN39793.1" FT /translation="MRAFSVLDQESETFVPSVRVYADGQVEDNSFSLKYRSNWTPGRFN FT STGSRTEQWHYPSPYSRGALSVTSVDQGAYKRSGSSWGRPYEEKAGFGFSLDARSCYSL FT FPVSQNLTYIEVPQNVANRASTEVLQKVTQGNFNLGVALAEARSTASQLATQTIALVKA FT YTAARRGNWRQTLRYLALNEDRKFRSKHVAGRWLELQFGWLPLMSDIQGAYEMLTKVHL FT QEFLPMRAVRQVGTNIKLDGRLSYPAANYQTTCNISRRIVIWFYINDARLAWLSSLGIL FT NPLGIVWEKVPFSFVVDWLLPVGNMLEGLTAPVGCSYMSGTVTDVITGESIISVDAPYG FT WTVDRQGTAKAQVSAMHRGVQSVWPTTGVYVKSPFSMVHTLDALALIRQRLLR" FT CDS 1337..1729 FT /codon_start=1 FT /transl_table=11 FT /product="capsid protein" FT /note="capsid/coat" FT /db_xref="GOA:J9QBW2" FT /db_xref="InterPro:IPR002703" FT /db_xref="InterPro:IPR015954" FT /db_xref="UniProtKB/TrEMBL:J9QBW2" FT /protein_id="AFN39794.1" FT /translation="MASNFTQFVLVDNGGTGDVTVAPSNFANGVAEWISSNSRSQAYKV FT TCSVRQSSAQNRKYTIKVEVPKVATQTVGGVQLPVAAWRSYLNMELTIPIFATNDDCAL FT IVKAMQGLLKDGNPIPSAIAANSGIY" FT CDS 1680..1907 FT /codon_start=1 FT /transl_table=11 FT /product="lysis protein" FT /db_xref="GOA:J9QBU7" FT /db_xref="InterPro:IPR022599" FT /db_xref="UniProtKB/TrEMBL:J9QBU7" FT /protein_id="AFN39795.1" FT /translation="METRSPQQSQQTPESTNRFRPFQHEDYPCRRQQRSSTLYVLIFLA FT IFLSKFTNQLLLSLLEAVIRTVETLQQLLT" FT CDS 1763..3400 FT /codon_start=1 FT /transl_table=11 FT /product="replicase" FT /note="RNA-dependent RNA polymerase" FT /db_xref="GOA:J9QBI9" FT /db_xref="InterPro:IPR005093" FT /db_xref="InterPro:IPR007096" FT /db_xref="UniProtKB/TrEMBL:J9QBI9" FT /protein_id="AFN39796.1" FT /translation="MSKTTKKFNSLCIDLPRDLSLEIYQSIASVATGSGDPHSRDFTAI FT AYLRDELLTKHPSLGNGNDEATRRALAIAKLREANERCGQINREGFLHDKSLSWDPDVL FT QTSIRSLIGNLLSGYRSSLFGQCTFSNGASMGHKLQDAAPYKKFAEQATVTPRALRAAL FT LVRDQCVPWIRHAVRYNESYEFRLVVGNGVFTVPKNNKIDRAACKEPDANMYLQKGVGD FT FIRRRLRSIGIDLNDQTINQRLAKLGSIDGSLATIDLSSASDSISDRLVWEFLPSQMYA FT YLSKIRSSRGIVDGRVVDWHLFSTMGNGFTFELESMIFWAIVKATMIHFGNLGTIGIYG FT DDIICPTEIAPRVLEALSFYGFKPNQSKTFITGRFRESCGAHYFGGADCKPIYIKKPVN FT NLFAVCLLLNRLRGWGVVNGVSDPRLFETWKWLSERVPSILFGGSNLDADYYVVSRQEA FT KKRYESHPSYGRTLSHFHSTPHRLYRVPVSKREFSPREESGRLITWYHNGGQVIDTTTT FT PRVRLVRTSEWLTVVPLFPQEDGNCELS" XX SQ Sequence 3525 BP; 827 A; 909 C; 888 G; 901 T; 0 other; gggtgggacc cctttcgggg tcctgctcaa cttcctgtcg agctaatgcc atttttttaa 60 tgtctttagc gagacgctac catggctatc gctgtaggta gccggaattc cattcctagg 120 aggtttgact catgcgagct tttagtgtcc ttgatcagga gtccgagacc ttcgtcccta 180 gcgtccgcgt ttatgcggac gggcaggtcg aagataactc gttttcccta aaataccgct 240 cgaactggac tcccggtcga tttaattcga ccgggtctag aacggaacag tggcactatc 300 cgtcccctta ttctaggggt gcgctcagtg tcacatcggt agatcaaggt gcctacaagc 360 gctctgggtc atcgtggggt cgcccgtacg aggagaaagc cggttttggc ttctcactcg 420 acgcacgttc ctgctatagc ctcttccctg ttagtcagaa tctgacttac atcgaagtgc 480 cgcagaacgt tgcgaaccgg gcgtcgaccg aagtcctgca gaaggtcact caaggaaatt 540 tcaaccttgg tgtggcccta gcagaggcca ggtcgacagc ctcacaactc gcgacgcaaa 600 ccattgcgct cgtgaaggcg tacactgccg ctcgtcgcgg caattggcgc cagacgctcc 660 gctatcttgc cctaaacgaa gatcggaagt tccgatcgaa acacgtggca ggcaggtggt 720 tggagttgca gttcggctgg ctaccgctca tgagcgatat ccagggcgca tatgagatgc 780 ttacgaaggt tcaccttcaa gagtttcttc ctatgagggc cgtacggcaa gtgggcacta 840 acattaagtt agatggccgt ttgtcgtatc cagctgcaaa ctaccagact acgtgcaaca 900 tatcacgacg aatcgtgata tggttttaca taaacgatgc acgtttggcc tggttgtcgt 960 ctctaggtat cttgaaccca ctaggtatag tgtgggaaaa ggtgcctttc tcattcgttg 1020 tcgactggct ccttcctgtt gggaacatgc tcgagggcct cacagccccc gtaggatgct 1080 cctacatgtc tggaacagtt actgacgtaa taacgggtga gtccatcata agcgtcgacg 1140 ctccctatgg gtggacggtg gatagacagg gcactgctaa ggcccaagtc tcagccatgc 1200 atcgaggggt gcaatccgta tggccaacaa ctggcgtata cgtgaagtca cctttctcga 1260 tggtccatac cttagacgcg ttggcattaa tcaggcaacg gctcttaaga tagagccctc 1320 aaccggagtt cgaagcatgg cttctaactt tactcagttc gttctcgtcg acaatggcgg 1380 aactggcgac gtgactgtcg ctccaagcaa cttcgctaac ggggtcgctg aatggattag 1440 ctctaactca cgttctcagg cttacaaagt aacctgtagc gttcgtcaga gctctgcgca 1500 gaaccgcaag tacaccatta aggttgaggt accaaaagtg gctacccaaa ccgtcggtgg 1560 tgtacagctt cctgtagccg catggcgttc gtacttgaat atggaattaa ctattcctat 1620 tttcgcaacg aacgacgatt gcgcgcttat tgttaaggcg atgcaaggtc tcctaaaaga 1680 tggaaacccg atcccctcag caatcgcagc aaactccgga atctactaat agattccgtc 1740 cattccaaca tgaggattac ccatgtcgaa gacaacaaag aagttcaact ctttatgtat 1800 tgatcttcct cgcgatcttt ctctcgaaat ttaccaatca attgcttctg tcgctactgg 1860 aagcggtgat ccgcacagta gagactttac agcaattgct tacctaagag acgaattgct 1920 aactaagcat ccgtccttag gaaatggtaa tgacgaggcg acccgccggg ctctagctat 1980 cgctaagctc cgggaggcga atgagcggtg cggccagatt aatagggaag gtttcttaca 2040 cgataaatcc ttatcgtggg atccggatgt tttacaaacc agcatccgta gccttattgg 2100 caaccttctc tctggctacc gctcgtcgtt gtttgggcaa tgcacgttct ccaacggtgc 2160 ctcaatgggg cacaagttgc aggatgcagc gccttacaag aagttcgctg aacaagcaac 2220 cgttaccccc cgcgctctga gagcggcact actggtccga gaccagtgtg tgccgtggat 2280 cagacacgcg gtccgctaca acgagtcata tgaatttagg ctcgtcgtag ggaacggagt 2340 gtttacagtt ccgaagaata ataaaataga tcgggctgcc tgcaaggagc ctgatgcgaa 2400 catgtacctt cagaaaggag ttggcgattt tatacgccgt cgtctccgct ctatcggtat 2460 cgacctgaat gatcaaacga tcaatcagcg tcttgcaaaa cttggcagca tcgatggttc 2520 tttagcgacg attgatttat cgtctgcttc tgattccata tcggaccgcc tcgtttggga 2580 attcctccca tcgcaaatgt acgcgtacct gtcgaaaatt cgttcgtcac gaggaatcgt 2640 tgacggacgt gtagtcgact ggcacctatt ttccacaatg ggtaatggtt ttacctttga 2700 gctagagtcc atgatatttt gggcaatagt caaggcaact atgatccatt ttggtaacct 2760 tggaacaatt ggcatctatg gggacgatat catatgtccc acagagattg cacctcgtgt 2820 gctagaggct ctcagcttct acggttttaa accgaatcag tcgaagacgt tcatcacggg 2880 tcgctttcgc gagtcctgtg gtgcacatta cttcggcggt gctgattgca aaccgattta 2940 tatcaagaaa cccgttaaca acctcttcgc cgtctgtctg ttactcaaca ggctacgcgg 3000 gtggggtgtt gtgaacggag tgtcagatcc tcgcctcttc gagacttgga aatggctatc 3060 cgaacgtgtt ccttcgatac ttttcggtgg gtctaacctt gatgcagact actacgtggt 3120 tagtcgtcag gaagctaaaa agcgttacga gagtcaccca tcttatgggc gcaccctctc 3180 tcactttcat agcactcctc atcggcttta ccgcgtgccc gtatctaaac gtgaattttc 3240 tccacgtgaa gaatccggtc gcctcatcac ttggtaccat aatggtggtc aagttattga 3300 caccactacg accccaaggg ttcgccttgt gcgaacgtcg gaatggctaa cagtggtgcc 3360 actcttccct caggaagatg gcaactgcga gctctcctag tcagcacggc tagggacccc 3420 cgtaatcggg gtgggtgccg cgaaagcggc tattcatcgt aacaacgatg gataggagta 3480 atctcctaat ttggtgacta actttgcttg gctagtcacc accca 3525 //