ID JQ240429; SV 1; linear; genomic DNA; STD; INV; 5989 BP. XX AC JQ240429; XX DT 11-AUG-2013 (Rel. 117, Created) DT 11-AUG-2013 (Rel. 117, Last updated, Version 1) XX DE Plasmodium vivax isolate V08B28 mitochondrion, complete genome. XX KW . XX OS Plasmodium vivax (malaria parasite P. vivax) OC Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; OC Plasmodiidae; Plasmodium; Plasmodium (Plasmodium). OG Mitochondrion XX RN [1] RC Publication Status: Online-Only RP 1-5989 RX PUBMED; 22340143. RA Miao M., Yang Z., Patch H., Huang Y., Escalante A.A., Cui L.; RT "Plasmodium vivax populations revisited: mitochondrial genomes of temperate RT strains in Asia suggest ancient population expansion"; RL BMC Evol. Biol. 12:22-22(2012). XX RN [2] RP 1-5989 RA Miao M., Yang Z., Patch H., Huang Y., Escalante A.A., Cui L.; RT ; RL Submitted (05-DEC-2011) to the INSDC. RL Department of Entomology, Penn State University, 501 ASI building, RL University Park, PA 16802, USA XX DR MD5; 3705b7c2cb867dd828908c257e27111a. DR EuropePMC; PMC3305529; 22340143. DR EuropePMC; PMC5792595; 29386521. XX FH Key Location/Qualifiers FH FT source 1..5989 FT /organism="Plasmodium vivax" FT /organelle="mitochondrion" FT /isolate="V08B28" FT /mol_type="genomic DNA" FT /db_xref="taxon:5855" FT CDS complement(1997..2788) FT /codon_start=1 FT /transl_table=4 FT /product="cytochrome oxidase subunit III" FT /note="cox3" FT /db_xref="GOA:Q5S1N5" FT /db_xref="InterPro:IPR000298" FT /db_xref="InterPro:IPR013833" FT /db_xref="InterPro:IPR024791" FT /db_xref="InterPro:IPR035973" FT /db_xref="UniProtKB/TrEMBL:Q5S1N5" FT /protein_id="AGS77817.1" FT /translation="MLTAHKITVLINIFFIFSNYNNIKAHLVSYPSLTSLYGTSLKYFS FT VGILFTFNPIIFIIFVYSIRESFYSIFSSLVSGMLSIIISEAILFITYFWGILHFSLSP FT YPLYNEGIILTSSRMLILTITFILASASCMTACLQFLIEKGMSLEISSIVFIIYLLGEC FT FASLQTTEYLHLGYCINDAISGTLFYCVTGLHFSHVIVGLLLLLIYFIRIVEMYDTNSE FT WSYSLYGISYIVLPHTDQITILYWHFVEIVWLFIEFFFYSE" FT CDS <3328..4761 FT /codon_start=1 FT /transl_table=4 FT /product="cytochrome oxidase subunit I" FT /note="cox1; start codon not determined" FT /db_xref="GOA:O63695" FT /db_xref="InterPro:IPR000883" FT /db_xref="InterPro:IPR023615" FT /db_xref="InterPro:IPR023616" FT /db_xref="InterPro:IPR036927" FT /db_xref="UniProtKB/TrEMBL:O63695" FT /protein_id="AGS77818.1" FT /translation="FFVFNRYTLITNCNHKTLGLYYLWFSFLFGSYGFLLSVILRTELY FT SSSLRIIAQENVNLYNMIFTLHGIIMIFFNIMPGLFGGFGNYFLPILCGSPELAYPRIN FT SISLLLQPIAFILVILSTAAEFGGGTGWTLYPPLSTSLMSLSPVAVDVIIVGLLVSGIA FT SIMSSLNFITTVMHLRSKGLTLGILSVSTWSLIITSVMLLLTLPVLTGGVLMLLSDLHF FT NTLFFDPTFAGDPILYQHLFWFFGHPEVYILILPAFGVISHVISTNYCRSLFGNQSMIL FT AMSCIAILGSVVWAHHMYTTGLEVDTRAFFTSTTILISIPTGTKIFNWICTYMGSNFGI FT THSSSLLSLLFICTFTFGGTTGVILGNAAIDIALHDTYYVIAHFHFVLSIGAIIGLFTL FT VSSFQENFFGKHLRENSIIILWSILFFIGVVLTFLPMHFLGFNVMPRRIPDYPDALNGW FT NMICSIGSTMTLFGLFIFK" FT CDS 4783..5931 FT /codon_start=1 FT /transl_table=4 FT /product="cytochrome b" FT /note="cytb" FT /db_xref="GOA:S5W282" FT /db_xref="InterPro:IPR005797" FT /db_xref="InterPro:IPR005798" FT /db_xref="InterPro:IPR016174" FT /db_xref="InterPro:IPR027387" FT /db_xref="InterPro:IPR036150" FT /db_xref="UniProtKB/TrEMBL:S5W282" FT /protein_id="AGS77819.1" FT /translation="MNYYSINLAKAHLLNYPCPLNINFLWNYGFLLGIIFFIQILTGVF FT LASRYTPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFLLTYLHILRGLNYSYLYL FT PLSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIPVLVIWLCGGYTVSD FT PTIKRFFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDTALKIPFYPNLLSLDVKGF FT NNIFILFLLQSIFGIIPLSHPDNAILVNTYVTPIQIVPEWYFLPFYAMLKTIPSKTAGL FT LIVLASLQLLFLLAEQRSLTTIIQFKMTFGAREYSVPMIWFMCSFYALLWIGCQLPQDI FT FILYGRLFIISFFSNGLFALVHYKRTHYDYSSQANIKITRLR" XX SQ Sequence 5989 BP; 1974 A; 917 C; 908 G; 2190 T; 0 other; aagttaggat aatgaaatta tagttaccat agctgtagat ggatgcttcg atatattata 60 tatttaagta ttaatcgaga ttacatgctc agccgccaaa aatataacga tattattacc 120 gtacaagccg ttagcaagac atgataggga gttgacaagt taaagaagtt ctggtttata 180 atagatacgt ttttaaagtt aggatgtatg ggataattgt agtacacctt aattggttta 240 actttatttg gtttatagat attatgttcg gtattgcatg cctggtgttt ttaattaaga 300 cgctgacttc ctggctaaac ttcccaatga tatatcttcc aaatagattt cgcagaaaac 360 cgtctatatt catgtttgat tgacctttaa ccgctaatta cgaatcttcc aagaatattt 420 caagagtcca aggttcggtc tataattttc ctgttctgta attagatcac atgtttatag 480 ttcatggaga tatgactata ccactattca tagagacaac taatggcatc tctctcgatt 540 tccagatgtt gagttactaa gaggattctc tccacacttc aattcgtact ttccactacc 600 aaaatataat ctcctgttct aatgttctag ggtttttcgc gttttttcag gagaaatccg 660 tatatcgatg tttttaaaat ctacgctatt ggattcaacg tccaggactt cctgacgttt 720 aataacgatt tctacttcca gcagccattt tggttcagct acaagttcac tgtcaactac 780 catgttacga cttcgcaccg actgttttct tttacctcac gagtcgatca ggaaggtttc 840 atccttaaat ctcgtaacca tgccaacaca taagaacttt ttagggaagt taaggtgctc 900 agggtcttac cgtcgggccg tatgattcca catattcatg gataattcta tttattagga 960 gtctcacact agcgacaatg gggaagtcgt tacaccgttc atgcaggacg gagattaccc 1020 gacaaggaat tttgctacct taggaccgtt tacgatacag ccgccgttta tcattgatgc 1080 cgggcagatg tcagtaactt gaactattca tcggaattat cagtgacttg tgttgtaacc 1140 ttacagacgc ttccagaata taacttctta taaatggtag cgcggtttcc cgggtatcca 1200 atccagtgct ccattcaagg catagagact cagcctgtgt tcaactttgt aggatatata 1260 atatagcttt tggtatctcg taatgtagaa caataatggg ttgaccgtca aatccttttc 1320 attaaaagag tggactaatg cccagccaac accatccaat ttgattggga ataatctgtg 1380 ttacaatact ttttgatccc aggctggtaa aaaatgtaaa cttttagccc aaaagaatag 1440 aaacagatgc caggccaaaa acccaaaaat agagctatga cgctatcaat ttgacaaggc 1500 agataaattc tttcatagaa cttaacgttt catcctccat acataaataa aacggtagat 1560 agggaacaaa ctgcctcaag acgttcttaa cccagctcac gcatcgcttc taacggtgaa 1620 ctctcattcc aatggaacct tgttcaagtt caaatagatt ggtaaggtat agcgtttact 1680 atcgaatgaa acaatgtatt ccaccgctag tgtttgcttc taacattcca cttgcttata 1740 actgtatgga cgtaacctcc aggcaaagaa aatgaccggt caaaacggaa tcagttaact 1800 atggatagct gatactaaca atttatcatt actcaagtca gcatagtcta tatgaaggtt 1860 tctatggaaa cacacttccc ttctcgccat ttgatagcgg ttaacctttc tttttcctta 1920 cgtactctag cttttaacac aatattattg tctatactag atactatagt tgaaacagga 1980 catatacata tattcattat tctgaataga aaaagaactc tataaataac catacaattt 2040 caacaaaatg ccagtataat attgtaattt gatcagtatg aggtaataca atataagata 2100 taccatataa tgaatatgac cattcactat tagtatcata catttcaact attcttataa 2160 aatatattaa taataataat aaaccaacta taacatgtga aaaatgtaaa cctgtaacac 2220 aataaaataa tgtaccagat atagcatcat ttatacaata tcctaaatgt aagtattcag 2280 ttgtttgaag tgatgcaaaa cattctccaa gtaagtatat tataaataca atactagaaa 2340 tttctaaact cattcctttt tctattagaa attgtaaaca tgctgtcata catgatgcac 2400 ttgctaaaat aaatgtaata gttagaatta acattcttga tgatgttaaa ataattcctt 2460 cattatataa tggatatgga gataaactaa aatgtaaaat accccaaaaa tatgtaataa 2520 ataatattgc ttcagatata attatagata acattcctga tactaatgat gaaaatatag 2580 aataaaaact ttctctaata gaatatacaa atattataaa aataatagga ttgaatgtaa 2640 ataagatacc cacagaaaaa tattttaaag atgttccata taatgatgtt aatgaaggat 2700 aagatactaa atgtgcttta atattattat agttactaaa tataaaaaat atatttataa 2760 gaacggtgat tttgtgtgcc gttaacatat aacggtaaga aggttcgccg gggataacag 2820 gttatagtat atatagagct caaatcttta tatactattg gcacctccat gtcgtctcat 2880 cgcagccttg caataaatta atattattta gcgtgtattg ttgccttgta cacaccgctc 2940 gtcacgcaaa tttatattac taagataaag aactccaggc gttaacctgt agagttgaga 3000 tggaaacagc cggaaaggaa atattacgtc caaatgataa gaatatatat gaaatatact 3060 agcatgggac taaaaaatgt tatgttgttg gtttaagccc ttttaccata caagagatcg 3120 cgtactttgg actgaaaaaa gctgtgagga aactacatta aaggaactcg actggcctac 3180 aatataagaa cgaacgcttt taacgcctga catggatgga taatactcga cttttccaaa 3240 gtataaccgc tgtcgctggg actgtatgga tcgaatctta cttattcata tccaagcctc 3300 acttattgtt aattatatat tatatttttt tttgttttca atagatatac acttattaca 3360 aattgcaatc ataaaacttt aggtctatac tatttatggt tttcattttt atttggtagt 3420 tatggttttt tattatctgt tattttacgt acagaattat attcttcttc tttaagaata 3480 attgcacaag aaaatgttaa cttatataat atgatattta cattacatgg aattattatg 3540 atattcttta atataatgcc aggattattt ggaggattcg gtaattactt cctaccaatt 3600 ttatgtggtt ctccagaact tgcatatcca agaattaata gtatatcttt attattacaa 3660 ccaatagctt ttatattagt cattttatct acagcagcag aatttggagg aggtactgga 3720 tggactttat atccaccatt aagtacatca cttatgtctt tatctcctgt tgcagtagat 3780 gttatcattg ttggtctttt agtatctggt attgctagta ttatgtcttc tttaaatttt 3840 attactactg taatgcatct aagatctaaa ggtttaacac ttggtatatt aagtgtatct 3900 acatggtcat taataattac atctgtaatg ctattattaa cattacctgt tttaacaggt 3960 ggtgttttaa tgttattatc agatttacat tttaatacat tattttttga tcctacattt 4020 gctggagatc ctattttata tcaacatcta ttttggtttt ttggacatcc tgaagtgtat 4080 attttaatat taccagcatt tggtgttatt agtcatgtaa tatctacaaa ttattgtaga 4140 agtttatttg gtaatcaatc tatgatttta gcaatgagtt gtattgctat attaggaagt 4200 gttgtatggg ctcatcatat gtatactaca ggtttagaag tagatacaag agcatttttt 4260 acatctacaa ctatattaat atctatacct actggaacaa aaatatttaa ttggatatgt 4320 acatatatgg gtagtaattt tggtataact catagttcat ctttattatc attactattt 4380 atatgtacat ttacttttgg tggtactaca ggagtaatat taggtaatgc agctattgat 4440 attgcattac atgatactta ctatgtaatc gctcatttcc attttgtatt atctataggt 4500 gcaattattg gattgtttac attagtaagt agttttcaag aaaacttttt tggtaaacat 4560 ttacgtgaaa attctataat aatattatgg tcaatcttat tttttattgg agttgtatta 4620 acattcttac ctatgcattt tcttggattt aatgtaatgc ctagacgtat tcctgattat 4680 ccagacgctt taaatggatg gaatatgatt tgttcaattg gatcaacaat gactttattt 4740 ggtttattta tttttaaata atataaaata ttttttgttt atatgaatta ttattctatt 4800 aatttagcaa aagcacattt attaaattac ccatgcccat taaatattaa tttcttatgg 4860 aattatggat ttcttttagg tattatattc tttatacaaa tattaacagg tgtattttta 4920 gcaagtcgtt atactccaga aatatcttat gcatattata gtatacaaca tattttaaga 4980 gaattatgga gtggatggtg ttttagatat atgcatgcta caggtgcatc tcttgtattc 5040 ttattaactt atttacacat tttaagagga ttaaattatt catatttata tttaccatta 5100 tcatggatat caggattaat catatttgca ttatttatag ttacagcttt tataggttac 5160 gttttacctt ggggacaaat gagttattgg ggtgcaactg ttataactaa tttattatct 5220 tcaattccag tattagtaat ttggttatgt ggaggatata ctgtaagtga tcctacaatt 5280 aaaagatttt ttgtattaca ttttatactt ccttttgtag cattatgtat tgtatttata 5340 catatattct ttttacattt acatggtagc acaaatcctt tagggtatga tacagcttta 5400 aaaataccct tctatccaaa tctattaagt cttgatgtaa aaggatttaa taatatattt 5460 atattattct tattacaaag tatttttggt ataattccat tatctcatcc agataatgct 5520 atattagtta atacatatgt tacaccaatt caaattgttc ctgaatggta ctttttacca 5580 ttttatgcaa tgttaaaaac aatacctagt aaaacagcag gtttattaat tgttttagca 5640 tctttacaat tattattttt attagctgaa caaagaagtt taactactat aatacaattt 5700 aaaatgacat ttggtgctag agaatattca gtaccaatga tatggtttat gtgttcattc 5760 tatgctttat tatggattgg atgtcagtta ccacaagata tttttatttt atatggtcgt 5820 ttatttataa tatcattctt ctctaatgga ttatttgcac ttgttcatta taaaagaaca 5880 cattatgatt acagctccca agcaaacatt aaaattacaa ggctacgata agacgatatc 5940 tctgaatatt gagcagaaca atacagaccg taaggttata attatgtta 5989 //