ID JQ240422; SV 1; linear; genomic DNA; STD; INV; 5989 BP. XX AC JQ240422; XX DT 11-AUG-2013 (Rel. 117, Created) DT 11-AUG-2013 (Rel. 117, Last updated, Version 1) XX DE Plasmodium vivax isolate V08A38 mitochondrion, complete genome. XX KW . XX OS Plasmodium vivax (malaria parasite P. vivax) OC Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; OC Plasmodiidae; Plasmodium; Plasmodium (Plasmodium). OG Mitochondrion XX RN [1] RC Publication Status: Online-Only RP 1-5989 RX PUBMED; 22340143. RA Miao M., Yang Z., Patch H., Huang Y., Escalante A.A., Cui L.; RT "Plasmodium vivax populations revisited: mitochondrial genomes of temperate RT strains in Asia suggest ancient population expansion"; RL BMC Evol. Biol. 12:22-22(2012). XX RN [2] RP 1-5989 RA Miao M., Yang Z., Patch H., Huang Y., Escalante A.A., Cui L.; RT ; RL Submitted (05-DEC-2011) to the INSDC. RL Department of Entomology, Penn State University, 501 ASI building, RL University Park, PA 16802, USA XX DR MD5; 2516d8cc43c06d6067da07007c73b36a. XX FH Key Location/Qualifiers FH FT source 1..5989 FT /organism="Plasmodium vivax" FT /organelle="mitochondrion" FT /isolate="V08A38" FT /mol_type="genomic DNA" FT /db_xref="taxon:5855" FT CDS complement(1997..2788) FT /codon_start=1 FT /transl_table=4 FT /product="cytochrome oxidase subunit III" FT /note="cox3" FT /db_xref="GOA:Q5S1N5" FT /db_xref="InterPro:IPR000298" FT /db_xref="InterPro:IPR013833" FT /db_xref="InterPro:IPR024791" FT /db_xref="InterPro:IPR035973" FT /db_xref="UniProtKB/TrEMBL:Q5S1N5" FT /protein_id="AGS77796.1" FT /translation="MLTAHKITVLINIFFIFSNYNNIKAHLVSYPSLTSLYGTSLKYFS FT VGILFTFNPIIFIIFVYSIRESFYSIFSSLVSGMLSIIISEAILFITYFWGILHFSLSP FT YPLYNEGIILTSSRMLILTITFILASASCMTACLQFLIEKGMSLEISSIVFIIYLLGEC FT FASLQTTEYLHLGYCINDAISGTLFYCVTGLHFSHVIVGLLLLLIYFIRIVEMYDTNSE FT WSYSLYGISYIVLPHTDQITILYWHFVEIVWLFIEFFFYSE" FT CDS <3327..4760 FT /codon_start=1 FT /transl_table=4 FT /product="cytochrome oxidase subunit I" FT /note="cox1; start codon not determined" FT /db_xref="GOA:O63695" FT /db_xref="InterPro:IPR000883" FT /db_xref="InterPro:IPR023615" FT /db_xref="InterPro:IPR023616" FT /db_xref="InterPro:IPR036927" FT /db_xref="UniProtKB/TrEMBL:O63695" FT /protein_id="AGS77797.1" FT /translation="FFVFNRYTLITNCNHKTLGLYYLWFSFLFGSYGFLLSVILRTELY FT SSSLRIIAQENVNLYNMIFTLHGIIMIFFNIMPGLFGGFGNYFLPILCGSPELAYPRIN FT SISLLLQPIAFILVILSTAAEFGGGTGWTLYPPLSTSLMSLSPVAVDVIIVGLLVSGIA FT SIMSSLNFITTVMHLRSKGLTLGILSVSTWSLIITSVMLLLTLPVLTGGVLMLLSDLHF FT NTLFFDPTFAGDPILYQHLFWFFGHPEVYILILPAFGVISHVISTNYCRSLFGNQSMIL FT AMSCIAILGSVVWAHHMYTTGLEVDTRAFFTSTTILISIPTGTKIFNWICTYMGSNFGI FT THSSSLLSLLFICTFTFGGTTGVILGNAAIDIALHDTYYVIAHFHFVLSIGAIIGLFTL FT VSSFQENFFGKHLRENSIIILWSILFFIGVVLTFLPMHFLGFNVMPRRIPDYPDALNGW FT NMICSIGSTMTLFGLFIFK" FT CDS 4783..5931 FT /codon_start=1 FT /transl_table=4 FT /product="cytochrome b" FT /note="cytb" FT /db_xref="GOA:Q5S1D4" FT /db_xref="InterPro:IPR005797" FT /db_xref="InterPro:IPR005798" FT /db_xref="InterPro:IPR016174" FT /db_xref="InterPro:IPR027387" FT /db_xref="InterPro:IPR036150" FT /db_xref="UniProtKB/TrEMBL:Q5S1D4" FT /protein_id="AGS77798.1" FT /translation="MNYYSINLAKAHLLNYPCPLNINFLWNYGFLLGIIFFIQILTGVF FT LASRYTPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFLLTYLHILRGLNYSYLYL FT PLSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIPVLVIWLCGGYTVSD FT PTIKRFFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDTALKIPFYPNLLSLDVKGF FT NNIFILFLLQSIFGIIPLSHPDNAILVNTYVTPIQIVPEWYFLPFYAMLKTIPSKTAGL FT LIVLASLQLLFLLAEQRSLTTIIQFKMTFGAREYSVPMIWFMCSFYALLWIGCQLPQDI FT FILYGRLFIISFFSSGLFALVHYKRTHYDYSSQANIKITRLR" XX SQ Sequence 5989 BP; 1973 A; 917 C; 909 G; 2190 T; 0 other; aagttaggat aatgaaatta tagttaccat agctgtagat ggatgcttcg atatattata 60 tatttaagta ttaatcgaga ttacatgctc agccgccaaa aatataacga tattattacc 120 gtacaagccg ttagcaagac atgataggga gttgacaagt taaagaagtt ctggtttata 180 atagatacgt ttttaaagtt aggatgtatg ggataattgt agtacacctt aattggttta 240 actttatttg gtttatagat attatgttcg gtattgcatg cctggtgttt ttaattaaga 300 cgctgacttc ctggctaaac ttcccaatga tatatcttcc aaatagattt cgcagaaaac 360 cgtctatatt catgtttgat tgacctttaa ccgctaatta cgaatcttcc aagaatattt 420 caagagtcca aggttcggtc tataattttc ctgttctgta attagatcac atgtttatag 480 ttcatggaga tatgactata ccactattca tagagacaac taatggcatc tctctcgatt 540 tccagatgtt gagttactaa gaggattctc tccacacttc aattcgtact ttccactacc 600 aaaatataat ctcctgttct aatgttctag ggtttttcgc gttttttcag gagaaatccg 660 tatatcgatg tttttaaaat ctacgctatt ggattcaacg tccaggactt cctgacgttt 720 aataacgatt tctacttcca gcagccattt tggttcagct acaagttcac tgtcaactac 780 catgttacga cttcgcaccg actgttttct tttacctcac gagtcgatca ggaaggtttc 840 atccttaaat ctcgtaacca tgccaacaca taagaacttt ttagggaagt taaggtgctc 900 agggtcttac cgtcgggccg tatgattcca catattcatg gataattcta tttattagga 960 gtctcacact agcgacaatg gggaagtcgt tacaccgttc atgcaggacg gagattaccc 1020 gacaaggaat tttgctacct taggaccgtt tacgatacag ccgccgttta tcattgatgc 1080 cgggcagatg tcagtaactt gaactattca tcggaattat cagtgacttg tgttgtaacc 1140 ttacagacgc ttccagaata taacttctta taaatggtag cgcggtttcc cgggtatcca 1200 atccagtgct ccattcaagg catagagact cagcctgtgt tcaactttgt aggatatata 1260 atatagcttt tggtatctcg taatgtagaa caataatggg ttgaccgtca aatccttttc 1320 attaaaagag tggactaatg cccagccaac accatccaat ttgattggga ataatctgtg 1380 ttacaatact ttttgatccc aggctggtaa aaaatgtaaa cttttagccc aaaagaatag 1440 aaacagatgc caggccaaaa acccaaaaat agagctatga cgctatcaat ttgacaaggc 1500 agataaattc tttcatagaa cttaacgttt catcctccat acataaataa aacggtagat 1560 agggaacaaa ctgcctcaag acgttcttaa cccagctcac gcatcgcttc taacggtgaa 1620 ctctcattcc aatggaacct tgttcaagtt caaatagatt ggtaaggtat agcgtttact 1680 atcgaatgaa acaatgtatt ccaccgctag tgtttgcttc taacattcca cttgcttata 1740 actgtatgga cgtaacctcc aggcaaagaa aatgaccggt caaaacggaa tcagttaact 1800 atggatagct gatactaaca atttatcatt actcaagtca gcatagtcta tatgaaggtt 1860 tctatggaaa cacacttccc ttctcgccat ttgatagcgg ttaacctttc tttttcctta 1920 cgtactctag cttttaacac aatattattg tctatactag atactatagt tgaaacagga 1980 catatacata tattcattat tctgaataga aaaagaactc tataaataac catacaattt 2040 caacaaaatg ccagtataat attgtaattt gatcagtatg aggtaataca atataagata 2100 taccatataa tgaatatgac cattcactat tagtatcata catttcaact attcttataa 2160 aatatattaa taataataat aaaccaacta taacatgtga aaaatgtaaa cctgtaacac 2220 aataaaataa tgtaccagat atagcatcat ttatacaata tcctaaatgt aagtattcag 2280 ttgtttgaag tgatgcaaaa cattctccaa gtaagtatat tataaataca atactagaaa 2340 tttctaaact cattcctttt tctattagaa attgtaaaca tgctgtcata catgatgcac 2400 ttgctaaaat aaatgtaata gttagaatta acattcttga tgatgttaaa ataattcctt 2460 cattatataa tggatatgga gataaactaa aatgtaaaat accccaaaaa tatgtaataa 2520 ataatattgc ttcagatata attatagata acattcctga tactaatgat gaaaatatag 2580 aataaaaact ttctctaata gaatatacaa atattataaa aataatagga ttgaatgtaa 2640 ataagatacc cacagaaaaa tattttaaag atgttccata taatgatgtt aatgaaggat 2700 aagatactaa atgtgcttta atattattat agttactaaa tataaaaaat atatttataa 2760 gaacggtgat tttgtgtgcc gttaacatat aacggtaaga aggttcgccg gggataacag 2820 gttatagtat atatagagct caaatcttta tatactattg gcacctccat gtcgtctcat 2880 cgcagccttg caataaatta atattattta gcgtgtattg ttgccttgta cacaccgctc 2940 gtcacgcaaa tttatattac taagataaag aactccaggc gttaacctgt agagttgaga 3000 tggaaacagc cggaaaggaa atattacgtc caaatgataa gaatatatat gaaatatact 3060 agcatgggac taaaaaatgt tatgttgttg gtttaagccc ttttaccata caagagatcg 3120 cgtactttgg actgaaaaaa gctgtgagga aactacatta aaggaactcg actggcctac 3180 aatataagaa cgaacgcttt taacgcctga catggatgga taatactcga cttttccaaa 3240 gtataaccgc tgtcgctggg actgtatgga tcgaatctta cttattcata tccaagcctc 3300 acttattgtt aattatatat tatatttttt ttgttttcaa tagatataca cttattacaa 3360 attgcaatca taaaacttta ggtctatact atttatggtt ttcattttta tttggtagtt 3420 atggtttttt attatctgtt attttacgta cagaattata ttcttcttct ttaagaataa 3480 ttgcacaaga aaatgttaac ttatataata tgatatttac attacatgga attattatga 3540 tattctttaa tataatgcca ggattatttg gaggattcgg taattacttc ctaccaattt 3600 tatgtggttc tccagaactt gcatatccaa gaattaatag tatatcttta ttattacaac 3660 caatagcttt tatattagtc attttatcta cagcagcaga atttggagga ggtactggat 3720 ggactttata tccaccatta agtacatcac ttatgtcttt atctcctgtt gcagtagatg 3780 ttatcattgt tggtctttta gtatctggta ttgctagtat tatgtcttct ttaaatttta 3840 ttactactgt aatgcatcta agatctaaag gtttaacact tggtatatta agtgtatcta 3900 catggtcatt aataattaca tctgtaatgc tattattaac attacctgtt ttaacaggtg 3960 gtgttttaat gttattatca gatttacatt ttaatacatt attttttgat cctacatttg 4020 ctggagatcc tattttatat caacatctat tttggttttt tggacatcct gaagtgtata 4080 ttttaatatt accagcattt ggtgttatta gtcatgtaat atctacaaat tattgtagaa 4140 gtttatttgg taatcaatct atgattttag caatgagttg tattgctata ttaggaagtg 4200 ttgtatgggc tcatcatatg tatactacag gtttagaagt agatacaaga gcatttttta 4260 catctacaac tatattaata tctataccta ctggaacaaa aatatttaat tggatatgta 4320 catatatggg tagtaatttt ggtataactc atagttcatc tttattatca ttactattta 4380 tatgtacatt tacttttggt ggtactacag gagtaatatt aggtaatgca gctattgata 4440 ttgcattaca tgatacttac tatgtaatcg ctcatttcca ttttgtatta tctataggtg 4500 caattattgg attgtttaca ttagtaagta gttttcaaga aaactttttt ggtaaacatt 4560 tacgtgaaaa ttctataata atattatggt caatcttatt ttttattgga gttgtattaa 4620 cattcttacc tatgcatttt cttggattta atgtaatgcc tagacgtatt cctgattatc 4680 cagacgcttt aaatggatgg aatatgattt gttcaattgg atcaacaatg actttatttg 4740 gtttatttat ttttaaataa tataaaatat ttttttgttt atatgaatta ttattctatt 4800 aatttagcaa aagcacattt attaaattac ccatgcccat taaatattaa tttcttatgg 4860 aattatggat ttcttttagg tattatattc tttatacaaa tattaacagg tgtattttta 4920 gcaagtcgtt atactccaga aatatcttat gcatattata gtatacaaca tattttaaga 4980 gaattatgga gtggatggtg ttttagatat atgcatgcta caggtgcatc tcttgtattc 5040 ttattaactt atttacacat tttaagagga ttaaattatt catatttata tttaccatta 5100 tcatggatat caggattaat catatttgca ttatttatag ttacagcttt tataggttac 5160 gttttacctt ggggacaaat gagttattgg ggtgcaactg ttataactaa tttattatct 5220 tcaattccag tattagtaat ttggttatgt ggaggatata ctgtaagtga tcctacaatt 5280 aaaagatttt ttgtattaca ttttatactt ccttttgtag cattatgtat tgtatttata 5340 catatattct ttttacattt acatggtagc acaaatcctt tagggtatga tacagcttta 5400 aaaataccct tctatccaaa tctattaagt cttgatgtaa aaggatttaa taatatattt 5460 atattattct tattacaaag tatttttggt ataattccat tatctcatcc agataatgct 5520 atattagtta atacatatgt tacaccaatt caaattgttc ctgaatggta ctttttacca 5580 ttttatgcaa tgttaaaaac aatacctagt aaaacagcag gtttattaat tgttttagca 5640 tctttacaat tattattttt attagctgaa caaagaagtt taactactat aatacaattt 5700 aaaatgacat ttggtgctag agaatattca gtaccaatga tatggtttat gtgttcattc 5760 tatgctttat tatggattgg atgtcagtta ccacaagata tttttatttt atatggtcgt 5820 ttatttataa tatcattctt ctctagtgga ttatttgcac ttgttcatta taaaagaaca 5880 cattatgatt acagctccca agcaaacatt aaaattacaa ggctacgata agacgatatc 5940 tctgaatatt gagcagaaca atacagaccg taaggttata attatgtta 5989 //